Wall clock time and date at job start Tue Mar 31 2020 12:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99960 * 2 1 4 4 H 1.08994 * 109.47181 * 29.99642 * 3 2 1 5 5 C 1.53000 * 109.46563 * 269.99359 * 3 2 1 6 6 C 1.50703 * 109.47241 * 63.15571 * 5 3 2 7 7 C 1.38228 * 119.99919 * 269.72652 * 6 5 3 8 8 C 1.38238 * 120.00062 * 179.74224 * 7 6 5 9 9 C 1.38241 * 119.99763 * 0.52430 * 8 7 6 10 10 C 1.38238 * 119.99920 * 359.75114 * 9 8 7 11 11 C 1.38230 * 119.99933 * 359.97345 * 10 9 8 12 12 C 1.50700 * 109.47107 * 149.99757 * 3 2 1 13 13 O 1.21283 * 119.99953 * 10.03975 * 12 3 2 14 14 N 1.34770 * 120.00058 * 190.03646 * 12 3 2 15 15 C 1.47027 * 125.64730 * 5.06372 * 14 12 3 16 16 C 1.54337 * 107.26549 * 178.85036 * 15 14 12 17 17 C 1.55159 * 103.01840 * 338.13808 * 16 15 14 18 18 O 1.42903 * 111.00666 * 277.23356 * 17 16 15 19 19 C 1.50700 * 111.03502 * 153.39965 * 17 16 15 20 20 H 1.08001 * 120.00031 * 247.78553 * 19 17 16 21 21 C 1.37879 * 120.00179 * 67.78196 * 19 17 16 22 22 N 1.31512 * 119.99875 * 0.02562 * 21 19 17 23 23 Si 1.86796 * 120.00066 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47073 * 90.00308 * 23 21 19 25 25 H 1.48499 * 109.47485 * 210.00357 * 23 21 19 26 26 H 1.48495 * 109.47334 * 330.00443 * 23 21 19 27 27 C 1.47431 * 125.65127 * 185.36892 * 14 12 3 28 28 H 1.09004 * 109.47641 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47412 * 300.00737 * 1 2 3 30 30 H 1.09003 * 109.47138 * 60.00112 * 1 2 3 31 31 H 1.09001 * 109.46950 * 183.15470 * 5 3 2 32 32 H 1.09000 * 109.47540 * 303.15286 * 5 3 2 33 33 H 1.07999 * 120.00463 * 359.97438 * 7 6 5 34 34 H 1.07992 * 120.00314 * 180.29294 * 8 7 6 35 35 H 1.07998 * 120.00051 * 179.76610 * 9 8 7 36 36 H 1.07994 * 119.99721 * 179.97438 * 10 9 8 37 37 H 1.08006 * 120.00315 * 180.02562 * 11 10 9 38 38 H 1.09006 * 109.87968 * 298.39071 * 15 14 12 39 39 H 1.08993 * 109.88448 * 59.55528 * 15 14 12 40 40 H 1.08998 * 110.84904 * 219.67637 * 16 15 14 41 41 H 1.08996 * 110.52023 * 96.45289 * 16 15 14 42 42 H 0.96706 * 113.99946 * 292.20612 * 18 17 16 43 43 H 0.97001 * 120.00079 * 179.97438 * 22 21 19 44 44 H 1.08996 * 110.36220 * 322.93482 * 27 14 12 45 45 H 1.08997 * 110.36228 * 85.14798 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2177 1.7712 -1.4425 6 6 0.8817 1.8871 -2.1302 7 6 0.3559 0.8021 -2.8062 8 6 -0.8720 0.9067 -3.4324 9 6 -1.5692 2.0998 -3.3917 10 6 -1.0407 3.1866 -2.7205 11 6 0.1846 3.0802 -2.0895 12 6 3.3386 1.2639 0.7105 13 8 3.8329 0.1977 1.0102 14 7 3.9773 2.4115 1.0127 15 6 3.4480 3.7673 0.8042 16 6 4.5110 4.7588 1.3229 17 6 5.3445 3.8950 2.3060 18 8 4.7147 3.8249 3.5868 19 6 6.7520 4.4196 2.4274 20 1 7.5791 3.8404 2.0441 21 6 6.9839 5.6390 3.0276 22 7 5.9768 6.3440 3.4948 23 14 8.7286 6.2889 3.1787 24 1 9.0616 7.0967 1.9779 25 1 8.8373 7.1380 4.3922 26 1 9.6740 5.1489 3.2861 27 6 5.3249 2.5155 1.6015 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.7121 2.7426 -1.4431 32 1 2.8375 1.0478 -1.9724 33 1 0.9027 -0.1286 -2.8419 34 1 -1.2850 0.0576 -3.9565 35 1 -2.5268 2.1827 -3.8842 36 1 -1.5851 4.1187 -2.6891 37 1 0.5974 3.9291 -1.5647 38 1 3.2681 3.9357 -0.2577 39 1 2.5214 3.8937 1.3639 40 1 4.0417 5.5927 1.8449 41 1 5.1323 5.1168 0.5020 42 1 4.7027 4.6650 4.0657 43 1 6.1399 7.2017 3.9174 44 1 5.4849 1.7171 2.3260 45 1 6.0841 2.4759 0.8204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592854187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:29 Heat of formation + Delta-G solvation = -114.930900 kcal Electronic energy + Delta-G solvation = -27557.479800 eV Core-core repulsion = 23732.431729 eV Total energy + Delta-G solvation = -3825.048071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54809 -40.35286 -39.18301 -38.16450 -36.18933 -34.24383 -34.12600 -31.88944 -31.74136 -30.59533 -29.80570 -27.34006 -27.09321 -25.37658 -23.68787 -23.41888 -21.98590 -21.59386 -20.52299 -19.16079 -18.53813 -17.85121 -17.55836 -16.97042 -16.91212 -16.46428 -16.27373 -16.14127 -15.83730 -15.77848 -15.32557 -14.79367 -14.60043 -14.25197 -14.14085 -14.03768 -13.65129 -13.61975 -13.53532 -13.38820 -13.19614 -13.02450 -12.83221 -12.60284 -12.48050 -12.28111 -12.15235 -11.98706 -11.88698 -11.71091 -11.30898 -11.11883 -10.74740 -10.60995 -10.14838 -9.75574 -9.63453 -9.41119 -8.24955 -6.39081 0.41492 0.53191 1.42731 1.46344 1.48342 1.54969 1.73105 2.39982 2.88073 2.90385 3.00771 3.36202 3.74583 3.82582 3.90846 3.95808 3.99977 4.05733 4.20064 4.27607 4.33631 4.35641 4.43463 4.48403 4.55965 4.59467 4.60971 4.69182 4.78782 4.84917 4.86500 4.90567 5.14309 5.17943 5.21244 5.23179 5.44434 5.53353 5.61404 5.67271 5.72012 5.77785 6.01703 6.06388 6.14118 6.53945 6.64396 7.06586 7.32162 7.46148 8.81409 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.003153 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.334810 B = 8879.613340 C = 9541.758966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.382 6.382 3 C 0.098 3.902 4 H 0.099 0.901 5 C -0.093 4.093 6 C -0.094 4.094 7 C -0.116 4.116 8 C -0.126 4.126 9 C -0.123 4.123 10 C -0.124 4.124 11 C -0.124 4.124 12 C 0.518 3.482 13 O -0.580 6.580 14 N -0.605 5.605 15 C 0.101 3.899 16 C -0.129 4.129 17 C 0.235 3.765 18 O -0.597 6.597 19 C -0.561 4.561 20 H 0.056 0.944 21 C 0.037 3.963 22 N -0.909 5.909 23 Si 0.961 3.039 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.278 1.278 27 C 0.123 3.877 28 H 0.099 0.901 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.382 0.618 43 H 0.273 0.727 44 H 0.043 0.957 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.454 -2.474 -14.027 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.301 6.301 3 C 0.037 3.963 4 H 0.117 0.883 5 C -0.131 4.131 6 C -0.094 4.094 7 C -0.134 4.134 8 C -0.144 4.144 9 C -0.141 4.141 10 C -0.141 4.141 11 C -0.142 4.142 12 C 0.307 3.693 13 O -0.460 6.460 14 N -0.338 5.338 15 C -0.020 4.020 16 C -0.167 4.167 17 C 0.194 3.806 18 O -0.407 6.407 19 C -0.599 4.599 20 H 0.075 0.925 21 C -0.164 4.164 22 N -0.548 5.548 23 Si 0.787 3.213 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.203 1.203 27 C 0.001 3.999 28 H 0.117 0.883 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.233 0.767 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.269 -3.733 -13.972 21.767 hybrid contribution 1.190 1.019 0.755 1.739 sum -15.079 -2.714 -13.217 20.234 Atomic orbital electron populations 1.23412 0.79079 1.04239 1.01765 1.87975 1.21575 1.25483 1.95036 1.21761 0.91385 0.87101 0.96098 0.88325 1.21025 0.96078 1.03451 0.92523 1.19672 0.95656 0.94874 0.99215 1.21164 0.96647 0.98202 0.97342 1.21401 0.94582 0.98882 0.99555 1.21500 1.00690 0.92874 0.99037 1.21438 0.95535 0.99822 0.97350 1.21317 0.95655 0.97189 1.00048 1.20727 0.87135 0.82313 0.79155 1.90648 1.68957 1.30740 1.55685 1.48573 1.17890 1.06466 1.60882 1.22376 0.97803 0.80224 1.01614 1.22998 0.96637 0.97593 0.99490 1.19771 0.90619 0.89112 0.81070 1.86100 1.81765 1.39583 1.33251 1.21694 0.93204 1.04548 1.40442 0.92535 1.25594 1.01038 0.96126 0.93669 1.69613 1.31894 1.14171 1.39167 0.85515 0.79955 0.78013 0.77861 1.19580 1.20685 1.20274 1.22208 0.83373 0.98288 0.96038 0.88284 0.93895 0.90958 0.88166 0.90547 0.86271 0.84225 0.83902 0.84048 0.84832 0.88603 0.90899 0.90756 0.91214 0.76685 0.91780 0.93859 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 10.19 113.37 1.16 1.39 16 2 O -0.38 -11.81 9.73 -130.14 -1.27 -13.08 16 3 C 0.10 2.86 2.14 29.85 0.06 2.92 16 4 H 0.10 2.53 7.56 -2.39 -0.02 2.51 16 5 C -0.09 -2.20 4.99 29.85 0.15 -2.05 16 6 C -0.09 -1.86 3.76 -19.87 -0.07 -1.94 16 7 C -0.12 -2.13 6.90 22.27 0.15 -1.98 16 8 C -0.13 -1.84 9.92 22.27 0.22 -1.61 16 9 C -0.12 -1.61 10.05 22.27 0.22 -1.38 16 10 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 11 C -0.12 -2.10 9.70 22.27 0.22 -1.89 16 12 C 0.52 20.33 7.17 87.66 0.63 20.96 16 13 O -0.58 -28.12 16.76 15.81 0.26 -27.85 16 14 N -0.60 -23.49 3.33 -811.77 -2.70 -26.19 16 15 C 0.10 3.28 6.15 86.73 0.53 3.81 16 16 C -0.13 -5.16 5.64 31.79 0.18 -4.98 16 17 C 0.23 11.23 0.89 -10.15 -0.01 11.22 16 18 O -0.60 -30.93 13.18 -148.98 -1.96 -32.89 16 19 C -0.56 -28.93 8.25 25.60 0.21 -28.72 16 20 H 0.06 2.94 7.77 -2.91 -0.02 2.91 16 21 C 0.04 1.84 5.30 84.66 0.45 2.29 16 22 N -0.91 -45.53 10.79 21.45 0.23 -45.30 16 23 Si 0.96 40.48 29.54 68.60 2.03 42.51 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 27 C 0.12 5.61 6.10 86.85 0.53 6.14 16 28 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.04 0.89 8.09 -2.38 -0.02 0.87 16 30 H 0.07 1.40 3.90 -2.39 -0.01 1.39 16 31 H 0.10 2.16 5.64 -2.39 -0.01 2.14 16 32 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 33 H 0.12 2.29 8.06 -2.91 -0.02 2.26 16 34 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 36 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.10 2.37 5.99 -2.38 -0.01 2.36 16 39 H 0.07 2.18 8.10 -2.39 -0.02 2.16 16 40 H 0.07 3.12 7.85 -2.39 -0.02 3.11 16 41 H 0.07 2.76 8.03 -2.39 -0.02 2.74 16 42 H 0.38 19.87 6.93 -74.05 -0.51 19.36 16 43 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 44 H 0.04 2.18 7.99 -2.39 -0.02 2.16 16 45 H 0.08 3.37 8.02 -2.39 -0.02 3.35 16 Total: -1.00 -65.30 362.52 1.93 -63.37 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: 0.49 Total: 36.78 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 4.85 Total: 2.66 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -2.47 Total: -71.49 kcal Atomic # 8 Polarization: -70.85 SS G_CDS: -2.96 Total: -73.82 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -65.30 1.93 -63.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.565 kcal (2) G-P(sol) polarization free energy of solvation -65.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds