Wall clock time and date at job start Tue Mar 31 2020 12:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42894 * 114.00055 * 2 1 4 4 H 1.09003 * 109.46963 * 178.23324 * 3 2 1 5 5 C 1.52999 * 109.47351 * 298.23688 * 3 2 1 6 6 S 1.81402 * 109.47027 * 299.99932 * 5 3 2 7 7 O 1.42109 * 110.54123 * 68.37622 * 6 5 3 8 8 O 1.42094 * 110.54573 * 291.62423 * 6 5 3 9 9 N 1.65596 * 104.44728 * 179.97438 * 6 5 3 10 10 C 1.46501 * 120.00083 * 65.00523 * 9 6 5 11 11 C 1.53001 * 109.47413 * 164.99702 * 10 9 6 12 12 C 1.52996 * 109.46977 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46770 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00507 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00069 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99755 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00162 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47340 * 59.99961 * 17 15 13 19 19 H 1.48507 * 109.47247 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47265 * 299.99633 * 17 15 13 21 21 C 1.53002 * 109.47255 * 58.23886 * 3 2 1 22 22 C 1.54263 * 110.03403 * 172.32765 * 21 3 2 23 23 C 1.54962 * 104.16287 * 217.13673 * 22 21 3 24 24 C 1.54888 * 102.77461 * 37.88981 * 23 22 21 25 25 C 1.53879 * 110.03258 * 55.11218 * 21 3 2 26 26 H 1.08994 * 109.46695 * 301.61216 * 1 2 3 27 27 H 1.08998 * 109.46682 * 61.61165 * 1 2 3 28 28 H 1.08996 * 109.47367 * 181.60942 * 1 2 3 29 29 H 1.08996 * 109.47009 * 180.02562 * 5 3 2 30 30 H 1.08995 * 109.46860 * 60.00221 * 5 3 2 31 31 H 0.97002 * 120.00336 * 244.72114 * 9 6 5 32 32 H 1.08993 * 109.46738 * 284.99772 * 10 9 6 33 33 H 1.08999 * 109.47378 * 44.99502 * 10 9 6 34 34 H 1.09005 * 109.46765 * 300.00228 * 11 10 9 35 35 H 1.08999 * 109.47012 * 59.99575 * 11 10 9 36 36 H 1.08993 * 109.47477 * 299.99639 * 12 11 10 37 37 H 1.08999 * 109.46996 * 60.00640 * 12 11 10 38 38 H 0.97006 * 119.99684 * 180.02562 * 16 15 13 39 39 H 1.09001 * 110.01604 * 293.72548 * 21 3 2 40 40 H 1.09003 * 110.48845 * 335.78457 * 22 21 3 41 41 H 1.09004 * 110.48629 * 98.42433 * 22 21 3 42 42 H 1.08996 * 110.72249 * 279.57599 * 23 22 21 43 43 H 1.09000 * 110.92603 * 156.29831 * 23 22 21 44 44 H 1.09006 * 110.48359 * 203.40839 * 24 23 22 45 45 H 1.08997 * 110.60325 * 80.82424 * 24 23 22 46 46 H 1.08995 * 110.02998 * 238.56963 * 25 21 3 47 47 H 1.09000 * 110.03068 * 359.95308 * 25 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 3.0965 1.2195 0.0317 5 6 1.5943 2.0489 -1.2708 6 16 2.1708 1.1304 -2.7249 7 8 1.4628 -0.0950 -2.8536 8 8 3.5887 1.1696 -2.8097 9 7 1.6589 2.0345 -4.0144 10 6 2.2017 3.3783 -4.2285 11 6 1.8688 3.8427 -5.6477 12 6 2.4352 5.2464 -5.8709 13 6 2.1078 5.7036 -7.2691 14 1 1.5519 5.0575 -7.9324 15 6 2.5190 6.9463 -7.7021 16 7 3.1965 7.7330 -6.8947 17 14 2.1127 7.5134 -9.4349 18 1 0.6387 7.5407 -9.6140 19 1 2.6625 8.8758 -9.6517 20 1 2.7133 6.5748 -10.4165 21 6 1.5241 2.0802 1.2265 22 6 2.2875 3.4154 1.3449 23 6 2.4862 3.6046 2.8700 24 6 2.7664 2.1624 3.3604 25 6 1.8280 1.2838 2.5076 26 1 -0.3632 0.5387 0.8752 27 1 -0.3632 0.4886 -0.9041 28 1 -0.3634 -1.0272 0.0289 29 1 2.0380 3.0445 -1.2710 30 1 0.5082 2.1348 -1.3024 31 1 1.0027 1.6727 -4.6304 32 1 1.7608 4.0671 -3.5080 33 1 3.2836 3.3584 -4.0970 34 1 2.3097 3.1537 -6.3683 35 1 0.7870 3.8627 -5.7792 36 1 1.9940 5.9350 -5.1505 37 1 3.5170 5.2268 -5.7395 38 1 3.4855 8.6075 -7.1992 39 1 0.4532 2.2679 1.1488 40 1 3.2513 3.3500 0.8400 41 1 1.6945 4.2318 0.9324 42 1 1.5812 4.0003 3.3307 43 1 3.3374 4.2542 3.0740 44 1 2.5230 2.0652 4.4184 45 1 3.8075 1.8925 3.1831 46 1 0.9048 1.0859 3.0520 47 1 2.3212 0.3450 2.2555 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594758816.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:32 Heat of formation + Delta-G solvation = -149.908196 kcal Electronic energy + Delta-G solvation = -25654.078346 eV Core-core repulsion = 21962.957497 eV Total energy + Delta-G solvation = -3691.120849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.97753 -37.24593 -36.96170 -36.03235 -35.79432 -33.25752 -32.27266 -30.87531 -29.07368 -28.35333 -27.40541 -26.39974 -23.02808 -22.92464 -21.02941 -20.58572 -19.96948 -19.14764 -17.51381 -17.27625 -16.79712 -16.51230 -16.10114 -15.83330 -15.55839 -15.37282 -14.62430 -14.54017 -14.44504 -14.32126 -13.78991 -13.58918 -12.99551 -12.52917 -12.35819 -12.24117 -12.14523 -12.08487 -11.98778 -11.87661 -11.79366 -11.53971 -11.40345 -11.36169 -11.21492 -10.93703 -10.91639 -10.82310 -10.78202 -10.64145 -10.58217 -10.01655 -9.87797 -9.47970 -9.24938 -9.11679 -8.39305 -6.04648 -4.07307 0.27471 2.81515 3.30953 3.35551 3.37965 3.40741 3.75736 4.06291 4.12224 4.26377 4.28617 4.42522 4.45173 4.69589 4.85583 4.99272 5.04092 5.09933 5.14279 5.20773 5.27910 5.30103 5.31466 5.34123 5.37293 5.48321 5.55429 5.60819 5.61745 5.65918 5.78993 5.87481 5.89282 6.00549 6.03812 6.05483 6.53823 6.72915 6.73625 6.93470 7.15125 7.59480 7.72430 7.93992 8.35956 8.98980 9.57054 11.06645 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002732 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.625921 B =10247.707592 C =11359.546805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.373 6.373 3 C 0.108 3.892 4 H 0.119 0.881 5 C -0.676 4.676 6 S 2.617 3.383 7 O -0.952 6.952 8 O -0.955 6.955 9 N -1.119 6.119 10 C 0.109 3.891 11 C -0.116 4.116 12 C 0.021 3.979 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.114 4.114 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.119 4.119 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.416 0.584 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.018 0.982 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 -11.798 20.986 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.291 6.291 3 C 0.048 3.952 4 H 0.136 0.864 5 C -0.803 4.803 6 S 2.708 3.292 7 O -0.942 6.942 8 O -0.945 6.945 9 N -0.880 5.880 10 C -0.016 4.016 11 C -0.155 4.155 12 C -0.016 4.016 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.134 4.134 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.164 4.164 25 C -0.157 4.157 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.164 0.836 30 H 0.155 0.845 31 H 0.250 0.750 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.556 -12.519 21.081 24.938 hybrid contribution -1.142 1.267 -1.007 1.981 sum -5.697 -11.251 20.074 23.707 Atomic orbital electron populations 1.22870 0.80824 1.03463 1.00168 1.88080 1.20623 1.25862 1.94569 1.22060 0.99132 0.82940 0.91057 0.86377 1.31374 1.13872 1.16173 1.18902 1.04750 0.74997 0.74190 0.75238 1.93582 1.74697 1.40890 1.85048 1.93600 1.28967 1.86556 1.85346 1.55649 1.59226 1.29840 1.43245 1.21606 0.98805 0.80405 1.00771 1.21844 1.00850 1.00611 0.92194 1.19075 0.96491 0.89077 0.96997 1.21179 1.35458 1.00991 0.98488 0.92663 1.25020 0.95117 0.96780 0.97506 1.69948 1.37939 1.09750 1.35779 0.86638 0.78648 0.77768 0.84817 1.20270 1.21276 1.20198 1.22331 1.00932 0.95683 0.94406 1.22459 1.00629 0.96108 0.96889 1.22498 1.01575 0.96856 0.95309 1.22387 0.99825 0.94958 0.99226 1.22162 0.99830 0.99076 0.94604 0.93483 0.93595 0.89040 0.83642 0.84510 0.74989 0.92328 0.90532 0.92343 0.92621 0.96353 0.96163 0.92877 0.90234 0.90841 0.91085 0.91570 0.91336 0.91768 0.91438 0.91835 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.14 101.05 1.02 1.22 16 2 O -0.37 -4.06 8.92 -41.98 -0.37 -4.43 16 3 C 0.11 1.02 2.07 -26.73 -0.06 0.97 16 4 H 0.12 1.11 8.01 -51.93 -0.42 0.69 16 5 C -0.68 -6.34 5.11 37.16 0.19 -6.15 16 6 S 2.62 34.68 5.25 -107.50 -0.56 34.11 16 7 O -0.95 -14.60 17.35 -61.89 -1.07 -15.67 16 8 O -0.95 -16.09 17.50 -57.54 -1.01 -17.09 16 9 N -1.12 -14.90 5.89 -10.61 -0.06 -14.96 16 10 C 0.11 1.70 6.13 -4.04 -0.02 1.67 16 11 C -0.12 -2.21 5.29 -26.73 -0.14 -2.36 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 14 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 17 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.11 -0.88 1.86 -89.50 -0.17 -1.05 16 22 C -0.12 -0.93 5.53 -25.03 -0.14 -1.07 16 23 C -0.12 -0.86 6.91 -24.70 -0.17 -1.03 16 24 C -0.13 -0.86 6.83 -25.07 -0.17 -1.03 16 25 C -0.12 -0.88 6.06 -25.61 -0.16 -1.03 16 26 H 0.05 0.32 6.36 -51.93 -0.33 -0.01 16 27 H 0.05 0.39 6.54 -51.93 -0.34 0.05 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.15 1.16 7.50 -51.93 -0.39 0.77 16 30 H 0.14 1.03 6.61 -51.93 -0.34 0.68 16 31 H 0.42 5.01 8.61 -34.47 -0.30 4.71 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.24 7.70 -51.93 -0.40 0.84 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.08 0.57 6.87 -51.93 -0.36 0.22 16 40 H 0.07 0.57 7.76 -51.93 -0.40 0.16 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.62 7.25 -51.93 -0.38 0.24 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -34.01 381.51 -10.24 -44.25 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.27 Total: 0.03 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -0.36 Total: -22.69 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.67 Total: -40.57 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -2.46 Total: -37.20 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 34.68 SS G_CDS: -0.56 Total: 34.11 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.01 -10.24 -44.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594758816.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.660 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds