Wall clock time and date at job start Tue Mar 31 2020 12:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42894 * 114.00055 * 2 1 4 4 H 1.09003 * 109.46963 * 178.23324 * 3 2 1 5 5 C 1.52999 * 109.47351 * 298.23688 * 3 2 1 6 6 S 1.81402 * 109.47027 * 299.99932 * 5 3 2 7 7 O 1.42109 * 110.54123 * 68.37622 * 6 5 3 8 8 O 1.42094 * 110.54573 * 291.62423 * 6 5 3 9 9 N 1.65596 * 104.44728 * 179.97438 * 6 5 3 10 10 C 1.46501 * 120.00083 * 65.00523 * 9 6 5 11 11 C 1.53001 * 109.47413 * 164.99702 * 10 9 6 12 12 C 1.52996 * 109.46977 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46770 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00507 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00069 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99755 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00162 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47340 * 59.99961 * 17 15 13 19 19 H 1.48507 * 109.47247 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47265 * 299.99633 * 17 15 13 21 21 C 1.53002 * 109.47255 * 58.23886 * 3 2 1 22 22 C 1.54263 * 110.03403 * 172.32765 * 21 3 2 23 23 C 1.54962 * 104.16287 * 217.13673 * 22 21 3 24 24 C 1.54888 * 102.77461 * 37.88981 * 23 22 21 25 25 C 1.53879 * 110.03258 * 55.11218 * 21 3 2 26 26 H 1.08994 * 109.46695 * 301.61216 * 1 2 3 27 27 H 1.08998 * 109.46682 * 61.61165 * 1 2 3 28 28 H 1.08996 * 109.47367 * 181.60942 * 1 2 3 29 29 H 1.08996 * 109.47009 * 180.02562 * 5 3 2 30 30 H 1.08995 * 109.46860 * 60.00221 * 5 3 2 31 31 H 0.97002 * 120.00336 * 244.72114 * 9 6 5 32 32 H 1.08993 * 109.46738 * 284.99772 * 10 9 6 33 33 H 1.08999 * 109.47378 * 44.99502 * 10 9 6 34 34 H 1.09005 * 109.46765 * 300.00228 * 11 10 9 35 35 H 1.08999 * 109.47012 * 59.99575 * 11 10 9 36 36 H 1.08993 * 109.47477 * 299.99639 * 12 11 10 37 37 H 1.08999 * 109.46996 * 60.00640 * 12 11 10 38 38 H 0.97006 * 119.99684 * 180.02562 * 16 15 13 39 39 H 1.09001 * 110.01604 * 293.72548 * 21 3 2 40 40 H 1.09003 * 110.48845 * 335.78457 * 22 21 3 41 41 H 1.09004 * 110.48629 * 98.42433 * 22 21 3 42 42 H 1.08996 * 110.72249 * 279.57599 * 23 22 21 43 43 H 1.09000 * 110.92603 * 156.29831 * 23 22 21 44 44 H 1.09006 * 110.48359 * 203.40839 * 24 23 22 45 45 H 1.08997 * 110.60325 * 80.82424 * 24 23 22 46 46 H 1.08995 * 110.02998 * 238.56963 * 25 21 3 47 47 H 1.09000 * 110.03068 * 359.95308 * 25 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 3.0965 1.2195 0.0317 5 6 1.5943 2.0489 -1.2708 6 16 2.1708 1.1304 -2.7249 7 8 1.4628 -0.0950 -2.8536 8 8 3.5887 1.1696 -2.8097 9 7 1.6589 2.0345 -4.0144 10 6 2.2017 3.3783 -4.2285 11 6 1.8688 3.8427 -5.6477 12 6 2.4352 5.2464 -5.8709 13 6 2.1078 5.7036 -7.2691 14 1 1.5519 5.0575 -7.9324 15 6 2.5190 6.9463 -7.7021 16 7 3.1965 7.7330 -6.8947 17 14 2.1127 7.5134 -9.4349 18 1 0.6387 7.5407 -9.6140 19 1 2.6625 8.8758 -9.6517 20 1 2.7133 6.5748 -10.4165 21 6 1.5241 2.0802 1.2265 22 6 2.2875 3.4154 1.3449 23 6 2.4862 3.6046 2.8700 24 6 2.7664 2.1624 3.3604 25 6 1.8280 1.2838 2.5076 26 1 -0.3632 0.5387 0.8752 27 1 -0.3632 0.4886 -0.9041 28 1 -0.3634 -1.0272 0.0289 29 1 2.0380 3.0445 -1.2710 30 1 0.5082 2.1348 -1.3024 31 1 1.0027 1.6727 -4.6304 32 1 1.7608 4.0671 -3.5080 33 1 3.2836 3.3584 -4.0970 34 1 2.3097 3.1537 -6.3683 35 1 0.7870 3.8627 -5.7792 36 1 1.9940 5.9350 -5.1505 37 1 3.5170 5.2268 -5.7395 38 1 3.4855 8.6075 -7.1992 39 1 0.4532 2.2679 1.1488 40 1 3.2513 3.3500 0.8400 41 1 1.6945 4.2318 0.9324 42 1 1.5812 4.0003 3.3307 43 1 3.3374 4.2542 3.0740 44 1 2.5230 2.0652 4.4184 45 1 3.8075 1.8925 3.1831 46 1 0.9048 1.0859 3.0520 47 1 2.3212 0.3450 2.2555 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594758816.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:32 Heat of formation + Delta-G solvation = -173.377650 kcal Electronic energy + Delta-G solvation = -25655.096058 eV Core-core repulsion = 21962.957497 eV Total energy + Delta-G solvation = -3692.138561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.64738 -38.23437 -37.77329 -37.37809 -36.98210 -35.15712 -33.00457 -32.61793 -29.63419 -28.99123 -28.20734 -28.04243 -24.75940 -23.64622 -22.21079 -21.56483 -20.59718 -20.25619 -18.58269 -18.52857 -18.00923 -17.66625 -17.10942 -16.69713 -16.48030 -16.32379 -16.20143 -15.96551 -15.60800 -15.01354 -14.41307 -14.30232 -14.16532 -14.05712 -13.76888 -13.65223 -13.19021 -13.15446 -13.09890 -12.94085 -12.76786 -12.70564 -12.53165 -12.49432 -12.32395 -11.93788 -11.90767 -11.81299 -11.71735 -11.54678 -11.45466 -11.37847 -11.31370 -11.14889 -10.69695 -10.52290 -10.31825 -8.18381 -6.28425 -0.75839 1.42015 1.44157 1.51916 1.75063 2.42667 2.65552 2.85364 3.15467 3.21384 3.31499 3.57063 3.70224 3.84118 3.90878 4.03253 4.26513 4.28761 4.33952 4.37971 4.47290 4.49877 4.59137 4.64866 4.67917 4.71104 4.73766 4.84237 4.89552 4.94628 4.99258 5.06789 5.11100 5.19817 5.23405 5.27645 5.32270 5.46635 5.49497 5.54832 5.76967 5.87721 6.04307 6.08129 6.27089 6.88293 7.40509 8.93027 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002732 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.625921 B =10247.707592 C =11359.546805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.394 6.394 3 C 0.100 3.900 4 H 0.113 0.887 5 C -0.653 4.653 6 S 2.618 3.382 7 O -0.976 6.976 8 O -0.999 6.999 9 N -1.116 6.116 10 C 0.116 3.884 11 C -0.106 4.106 12 C 0.022 3.978 13 C -0.545 4.545 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.961 3.039 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.270 1.270 21 C -0.108 4.108 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.127 4.127 25 C -0.119 4.119 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.422 0.578 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.006 0.994 37 H -0.006 1.006 38 H 0.263 0.737 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 -11.463 21.661 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.313 6.313 3 C 0.040 3.960 4 H 0.131 0.869 5 C -0.785 4.785 6 S 2.714 3.286 7 O -0.966 6.966 8 O -0.989 6.989 9 N -0.876 5.876 10 C -0.010 4.010 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.583 4.583 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.786 3.214 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.127 4.127 22 C -0.166 4.166 23 C -0.162 4.162 24 C -0.165 4.165 25 C -0.157 4.157 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.113 0.887 29 H 0.183 0.817 30 H 0.182 0.818 31 H 0.257 0.743 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.024 0.976 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.265 -12.226 21.709 25.690 hybrid contribution -0.615 1.139 -1.136 1.722 sum -6.880 -11.087 20.573 24.362 Atomic orbital electron populations 1.23081 0.79820 1.04272 1.01246 1.88066 1.21906 1.26599 1.94722 1.22206 0.99114 0.82945 0.91690 0.86936 1.31185 1.15615 1.16033 1.15650 1.04492 0.73878 0.74140 0.76078 1.93548 1.74706 1.42540 1.85834 1.93547 1.31797 1.87216 1.86350 1.55435 1.59179 1.28804 1.44209 1.21406 0.98595 0.81837 0.99154 1.21623 1.01197 0.97193 0.94482 1.18988 0.94981 0.92069 0.95558 1.21678 1.35295 1.01334 0.99952 0.92222 1.25923 0.94976 0.97038 1.01767 1.70072 1.39064 1.10169 1.37820 0.85562 0.78909 0.77263 0.79671 1.19084 1.20950 1.19559 1.22305 1.01567 0.95417 0.93448 1.22522 1.00504 0.96156 0.97432 1.22505 1.01972 0.96826 0.94856 1.22398 0.99486 0.94896 0.99677 1.22161 1.00269 0.98611 0.94629 0.91381 0.93375 0.88690 0.81660 0.81773 0.74260 0.89600 0.91701 0.92989 0.91264 0.97610 0.98775 0.92781 0.88969 0.91363 0.90411 0.90903 0.91217 0.90927 0.91917 0.90903 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 10.14 113.37 1.15 1.32 16 2 O -0.39 -8.08 8.92 -142.53 -1.27 -9.36 16 3 C 0.10 1.74 2.07 30.59 0.06 1.81 16 4 H 0.11 2.06 8.01 -2.39 -0.02 2.04 16 5 C -0.65 -10.77 5.11 71.98 0.37 -10.40 16 6 S 2.62 67.57 5.25 -56.49 -0.30 67.27 16 7 O -0.98 -29.49 17.35 -123.49 -2.14 -31.63 16 8 O -1.00 -34.10 17.50 -127.65 -2.23 -36.33 16 9 N -1.12 -28.38 5.89 -187.49 -1.10 -29.48 16 10 C 0.12 3.47 6.13 86.38 0.53 4.00 16 11 C -0.11 -3.98 5.29 30.59 0.16 -3.82 16 12 C 0.02 1.09 4.97 29.85 0.15 1.24 16 13 C -0.54 -30.08 9.11 25.60 0.23 -29.84 16 14 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 15 C 0.00 0.05 5.46 84.65 0.46 0.51 16 16 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16 17 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 C -0.11 -1.41 1.86 -10.07 -0.02 -1.43 16 22 C -0.13 -1.66 5.53 31.69 0.18 -1.48 16 23 C -0.12 -1.45 6.91 31.91 0.22 -1.23 16 24 C -0.13 -1.52 6.83 31.67 0.22 -1.30 16 25 C -0.12 -1.54 6.06 31.32 0.19 -1.35 16 26 H 0.07 0.73 6.36 -2.39 -0.02 0.71 16 27 H 0.05 0.70 6.54 -2.39 -0.02 0.68 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.17 2.15 7.50 -2.39 -0.02 2.13 16 30 H 0.16 1.88 6.61 -2.39 -0.02 1.86 16 31 H 0.42 9.63 8.61 -96.74 -0.83 8.79 16 32 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 2.10 7.70 -2.39 -0.02 2.09 16 34 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 37 H -0.01 -0.34 8.14 -2.39 -0.02 -0.35 16 38 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 39 H 0.09 1.00 6.87 -2.39 -0.02 0.98 16 40 H 0.07 0.95 7.76 -2.39 -0.02 0.93 16 41 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 1.00 7.25 -2.39 -0.02 0.98 16 Total: -1.00 -73.44 381.51 -0.73 -74.17 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.11 Total: 16.88 kcal Atomic # 6 Polarization: -45.87 SS G_CDS: 3.90 Total: -41.97 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -0.82 Total: -84.53 kcal Atomic # 8 Polarization: -71.67 SS G_CDS: -5.65 Total: -77.32 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 67.57 SS G_CDS: -0.30 Total: 67.27 kcal Total: -73.44 -0.73 -74.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594758816.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.204 kcal (2) G-P(sol) polarization free energy of solvation -73.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds