Wall clock time and date at job start Tue Mar 31 2020 12:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 114.00043 * 2 1 4 4 H 1.08998 * 109.46703 * 34.40337 * 3 2 1 5 5 C 1.52994 * 109.47168 * 274.40387 * 3 2 1 6 6 S 1.81402 * 109.47126 * 179.42107 * 5 3 2 7 7 O 1.42105 * 110.54112 * 299.41530 * 6 5 3 8 8 O 1.42092 * 110.54501 * 76.16423 * 6 5 3 9 9 N 1.65602 * 104.44856 * 187.79130 * 6 5 3 10 10 C 1.46500 * 120.00012 * 65.00238 * 9 6 5 11 11 C 1.52994 * 109.47036 * 164.99950 * 10 9 6 12 12 C 1.50704 * 109.47322 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99632 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99847 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00200 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47764 * 59.99484 * 16 14 12 18 18 H 1.48498 * 109.47486 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47227 * 299.99727 * 16 14 12 20 20 C 1.52997 * 109.46915 * 154.39957 * 3 2 1 21 21 C 1.52994 * 109.47554 * 300.00194 * 20 3 2 22 22 C 1.52997 * 109.47554 * 179.97438 * 21 20 3 23 23 C 1.53006 * 109.47192 * 299.99873 * 22 21 20 24 24 C 1.53007 * 109.46634 * 59.99839 * 23 22 21 25 25 C 1.52995 * 109.46981 * 299.99776 * 24 23 22 26 26 H 1.09001 * 109.46889 * 55.07357 * 1 2 3 27 27 H 1.08995 * 109.47218 * 175.07952 * 1 2 3 28 28 H 1.08997 * 109.46826 * 295.07816 * 1 2 3 29 29 H 1.09005 * 109.47049 * 299.41903 * 5 3 2 30 30 H 1.08996 * 109.47325 * 59.41452 * 5 3 2 31 31 H 0.96996 * 119.99468 * 244.99375 * 9 6 5 32 32 H 1.09003 * 109.46617 * 284.99753 * 10 9 6 33 33 H 1.08996 * 109.47413 * 44.99355 * 10 9 6 34 34 H 1.09003 * 109.47256 * 299.99412 * 11 10 9 35 35 H 1.08996 * 109.47505 * 59.99461 * 11 10 9 36 36 H 0.97010 * 120.00241 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.46903 * 179.97438 * 20 3 2 38 38 H 1.09004 * 109.47301 * 59.99895 * 21 20 3 39 39 H 1.08998 * 109.47267 * 300.00356 * 21 20 3 40 40 H 1.09004 * 109.47195 * 60.00114 * 22 21 20 41 41 H 1.08998 * 109.47266 * 179.97438 * 22 21 20 42 42 H 1.08995 * 109.47542 * 179.97438 * 23 22 21 43 43 H 1.08994 * 109.47249 * 300.00213 * 23 22 21 44 44 H 1.09001 * 109.46882 * 180.02562 * 24 23 22 45 45 H 1.08994 * 109.46997 * 60.00220 * 24 23 22 46 46 H 1.08994 * 109.47618 * 300.00064 * 25 24 23 47 47 H 1.09007 * 109.47353 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3834 1.9822 0.5806 5 6 2.1165 1.8164 -1.4382 6 16 2.8386 3.4806 -1.4369 7 8 2.0204 4.3785 -0.6996 8 8 4.2405 3.4157 -1.2140 9 7 2.6976 3.9934 -3.0052 10 6 1.3713 4.2027 -3.5910 11 6 1.5058 5.0138 -4.8812 12 6 0.1415 5.2285 -5.4842 13 1 -0.7340 4.8263 -4.9961 14 6 0.0109 5.9375 -6.6594 15 7 1.0770 6.4269 -7.2539 16 14 -1.6802 6.2043 -7.4064 17 1 -2.5355 6.9444 -6.4440 18 1 -1.5497 6.9915 -8.6588 19 1 -2.3003 4.8896 -7.7100 20 6 3.4061 1.2422 0.6233 21 6 3.2999 0.7313 2.0615 22 6 4.6957 0.6674 2.6845 23 6 5.5751 -0.2830 1.8694 24 6 5.6814 0.2280 0.4311 25 6 4.2855 0.2918 -0.1919 26 1 -0.3633 0.5884 -0.8426 27 1 -0.3633 -1.0238 -0.0881 28 1 -0.3633 0.4356 0.9308 29 1 2.7518 1.1452 -2.0162 30 1 1.1233 1.8517 -1.8856 31 1 3.4933 4.1553 -3.5358 32 1 0.9164 3.2376 -3.8142 33 1 0.7434 4.7454 -2.8844 34 1 1.9607 5.9789 -4.6579 35 1 2.1336 4.4710 -5.5878 36 1 0.9852 6.9261 -8.0807 37 1 3.8497 2.2379 0.6229 38 1 2.8565 -0.2645 2.0615 39 1 2.6730 1.4080 2.6421 40 1 5.1396 1.6630 2.6846 41 1 4.6199 0.3038 3.7093 42 1 6.5697 -0.3282 2.3130 43 1 5.1314 -1.2785 1.8694 44 1 6.3075 -0.4493 -0.1498 45 1 6.1252 1.2235 0.4312 46 1 3.8417 -0.7037 -0.1919 47 1 4.3612 0.6555 -1.2167 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594773549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:36 Heat of formation + Delta-G solvation = -176.060595 kcal Electronic energy + Delta-G solvation = -26233.756469 eV Core-core repulsion = 22541.501567 eV Total energy + Delta-G solvation = -3692.254902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.55653 -38.34135 -38.06772 -37.15234 -36.98844 -34.74351 -33.98097 -31.68992 -31.02662 -30.24387 -27.65278 -26.43270 -25.01770 -23.42381 -23.00127 -21.99556 -20.75551 -20.38092 -18.92996 -18.25615 -17.87148 -17.45403 -16.99425 -16.86924 -16.47695 -15.91686 -15.80342 -15.61363 -15.44419 -15.08132 -14.91957 -14.47387 -14.39741 -14.32025 -13.74634 -13.39299 -13.29851 -13.27607 -13.17440 -13.02614 -12.96141 -12.81416 -12.76645 -12.45633 -12.37845 -12.23250 -12.05860 -11.96000 -11.74725 -11.51050 -11.34360 -11.29355 -11.07198 -10.89359 -10.70058 -10.58962 -10.28611 -8.21096 -6.32416 -0.82490 1.43387 1.46142 1.53603 1.69203 2.42442 2.62295 2.78232 3.12138 3.13881 3.33137 3.49276 3.68288 3.86165 3.99867 4.13362 4.15682 4.29031 4.34707 4.37444 4.49810 4.52445 4.56642 4.58928 4.63918 4.68907 4.72410 4.77585 4.83751 4.88907 4.96107 5.01041 5.17633 5.23773 5.31055 5.32778 5.38701 5.42998 5.48464 5.61538 5.61847 5.79878 6.00412 6.07096 6.21101 6.83591 7.37229 8.90875 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.022918 B = 0.003001 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.433093 B = 9328.992160 C = 9952.230094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.369 6.369 3 C 0.110 3.890 4 H 0.081 0.919 5 C -0.651 4.651 6 S 2.619 3.381 7 O -0.993 6.993 8 O -0.974 6.974 9 N -1.118 6.118 10 C 0.126 3.874 11 C 0.019 3.981 12 C -0.545 4.545 13 H 0.071 0.929 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.966 3.034 17 H -0.268 1.268 18 H -0.287 1.287 19 H -0.263 1.263 20 C -0.116 4.116 21 C -0.108 4.108 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.110 4.110 26 H 0.047 0.953 27 H 0.105 0.895 28 H 0.054 0.946 29 H 0.161 0.839 30 H 0.153 0.847 31 H 0.419 0.581 32 H 0.079 0.921 33 H 0.064 0.936 34 H -0.004 1.004 35 H 0.009 0.991 36 H 0.264 0.736 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.077 0.923 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.386 -16.885 18.043 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.288 6.288 3 C 0.050 3.950 4 H 0.099 0.901 5 C -0.783 4.783 6 S 2.713 3.287 7 O -0.983 6.983 8 O -0.964 6.964 9 N -0.878 5.878 10 C 0.000 4.000 11 C -0.020 4.020 12 C -0.584 4.584 13 H 0.089 0.911 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.790 3.210 17 H -0.193 1.193 18 H -0.212 1.212 19 H -0.187 1.187 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.148 4.148 26 H 0.066 0.934 27 H 0.123 0.877 28 H 0.072 0.928 29 H 0.179 0.821 30 H 0.171 0.829 31 H 0.254 0.746 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.014 0.986 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.755 -16.494 18.725 25.235 hybrid contribution -0.762 0.521 -1.529 1.786 sum 2.993 -15.973 17.197 23.660 Atomic orbital electron populations 1.23117 0.79878 1.04311 1.01129 1.87938 1.20876 1.25333 1.94612 1.21808 0.96113 0.86959 0.90106 0.90107 1.31172 1.16344 1.22730 1.08018 1.04486 0.74074 0.77513 0.72626 1.93552 1.71602 1.61734 1.71386 1.93566 1.30634 1.87977 1.84252 1.55444 1.14869 1.84040 1.33405 1.21391 0.81747 1.00526 0.96317 1.19152 0.96658 0.94382 0.91782 1.21563 0.94024 1.34745 1.08073 0.91110 1.25959 1.00942 0.95197 0.97616 1.70086 1.31015 1.37044 1.19019 0.85484 0.79249 0.78726 0.77504 1.19295 1.21222 1.18711 1.21743 0.92897 1.00893 0.97952 1.21497 0.97910 1.02347 0.92797 1.21583 0.94940 0.99938 0.99585 1.21534 1.00049 0.99163 0.94657 1.21579 0.96495 1.01346 0.96825 1.21535 0.95212 0.99777 0.98241 0.93408 0.87696 0.92787 0.82074 0.82910 0.74650 0.90295 0.91758 0.98588 0.97227 0.92718 0.91017 0.90274 0.91562 0.92638 0.90374 0.91256 0.91336 0.91104 0.92831 0.90394 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 10.80 113.37 1.22 1.40 16 2 O -0.37 -7.10 9.01 -148.98 -1.34 -8.44 16 3 C 0.11 2.30 1.97 30.59 0.06 2.36 16 4 H 0.08 1.61 7.88 -2.39 -0.02 1.59 16 5 C -0.65 -14.05 5.49 71.98 0.40 -13.66 16 6 S 2.62 77.63 4.72 -56.49 -0.27 77.37 16 7 O -0.99 -36.15 17.50 -127.65 -2.23 -38.38 16 8 O -0.97 -31.59 16.33 -127.65 -2.08 -33.67 16 9 N -1.12 -36.74 5.89 -187.50 -1.10 -37.84 16 10 C 0.13 4.78 6.07 86.38 0.52 5.31 16 11 C 0.02 0.94 5.11 29.85 0.15 1.09 16 12 C -0.55 -29.38 9.11 25.60 0.23 -29.15 16 13 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.93 -55.15 13.29 21.44 0.28 -54.87 16 16 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 20 C -0.12 -2.49 1.67 -10.79 -0.02 -2.50 16 21 C -0.11 -1.91 5.06 30.59 0.15 -1.75 16 22 C -0.12 -1.97 5.92 30.60 0.18 -1.79 16 23 C -0.12 -1.80 5.92 30.60 0.18 -1.62 16 24 C -0.12 -2.36 5.92 30.59 0.18 -2.17 16 25 C -0.11 -2.25 4.70 30.59 0.14 -2.11 16 26 H 0.05 0.69 7.44 -2.39 -0.02 0.67 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.16 3.02 6.40 -2.39 -0.02 3.00 16 30 H 0.15 2.83 7.42 -2.39 -0.02 2.81 16 31 H 0.42 13.31 8.62 -96.75 -0.83 12.48 16 32 H 0.08 2.55 8.08 -2.39 -0.02 2.53 16 33 H 0.06 2.49 7.69 -2.39 -0.02 2.48 16 34 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 37 H 0.07 1.76 5.84 -2.39 -0.01 1.75 16 38 H 0.08 1.33 7.68 -2.39 -0.02 1.31 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.08 1.50 7.68 -2.39 -0.02 1.48 16 47 H 0.06 1.23 6.42 -2.38 -0.02 1.22 16 Total: -1.00 -69.24 377.56 -0.74 -69.98 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.11 Total: 25.30 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 3.88 Total: -44.07 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -0.82 Total: -92.71 kcal Atomic # 8 Polarization: -74.84 SS G_CDS: -5.66 Total: -80.50 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 77.63 SS G_CDS: -0.27 Total: 77.37 kcal Total: -69.24 -0.74 -69.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594773549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.082 kcal (2) G-P(sol) polarization free energy of solvation -69.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds