Wall clock time and date at job start Tue Mar 31 2020 12:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99968 * 2 1 4 4 H 1.09004 * 109.46791 * 7.90825 * 3 2 1 5 5 C 1.52994 * 109.47102 * 247.90717 * 3 2 1 6 6 N 1.46498 * 109.47387 * 64.41959 * 5 3 2 7 7 S 1.65602 * 120.00030 * 165.49675 * 6 5 3 8 8 O 1.42095 * 104.27774 * 181.06975 * 7 6 5 9 9 O 1.42098 * 104.27562 * 308.93106 * 7 6 5 10 10 C 1.81406 * 104.45111 * 64.99847 * 7 6 5 11 11 C 1.52996 * 109.47006 * 180.02562 * 10 7 6 12 12 C 1.53003 * 109.46828 * 180.02562 * 11 10 7 13 13 C 1.50695 * 109.46916 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00598 * 0.02562 * 13 12 11 15 15 C 1.37887 * 119.99746 * 179.97438 * 13 12 11 16 16 N 1.31506 * 119.99888 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99784 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47219 * 90.00059 * 17 15 13 19 19 H 1.48500 * 109.47072 * 210.00332 * 17 15 13 20 20 H 1.48504 * 109.47259 * 329.99946 * 17 15 13 21 21 C 1.52999 * 109.46889 * 127.90604 * 3 2 1 22 22 C 1.54257 * 110.03700 * 57.90949 * 21 3 2 23 23 C 1.54958 * 104.16479 * 217.13474 * 22 21 3 24 24 C 1.54893 * 102.77610 * 37.88751 * 23 22 21 25 25 C 1.53874 * 110.03314 * 300.68743 * 21 3 2 26 26 H 1.09000 * 109.47171 * 59.14707 * 1 2 3 27 27 H 1.09005 * 109.46764 * 179.14690 * 1 2 3 28 28 H 1.08997 * 109.46998 * 299.14204 * 1 2 3 29 29 H 1.09008 * 109.46846 * 184.41983 * 5 3 2 30 30 H 1.09008 * 109.47249 * 304.41443 * 5 3 2 31 31 H 0.96996 * 120.00025 * 345.49719 * 6 5 3 32 32 H 1.08997 * 109.47009 * 300.00484 * 10 7 6 33 33 H 1.09000 * 109.46834 * 59.99611 * 10 7 6 34 34 H 1.09000 * 109.47310 * 299.99665 * 11 10 7 35 35 H 1.09001 * 109.47141 * 60.00129 * 11 10 7 36 36 H 1.08997 * 109.47021 * 300.00358 * 12 11 10 37 37 H 1.09001 * 109.47230 * 60.00090 * 12 11 10 38 38 H 0.97005 * 119.99943 * 179.97438 * 16 15 13 39 39 H 1.09004 * 110.01471 * 179.30290 * 21 3 2 40 40 H 1.09006 * 110.48365 * 335.78500 * 22 21 3 41 41 H 1.09001 * 110.49173 * 98.42410 * 22 21 3 42 42 H 1.08995 * 110.72424 * 279.57786 * 23 22 21 43 43 H 1.08997 * 110.92914 * 156.29175 * 23 22 21 44 44 H 1.09005 * 110.48952 * 203.40598 * 24 23 22 45 45 H 1.09003 * 110.60274 * 80.81729 * 24 23 22 46 46 H 1.09000 * 110.03919 * 238.57138 * 25 21 3 47 47 H 1.08999 * 110.03336 * 359.95551 * 25 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2280 2.0514 0.1414 5 6 2.7132 1.5507 -1.3365 6 7 1.7228 1.5544 -2.4159 7 16 2.1275 2.1453 -3.9091 8 8 0.9362 2.0142 -4.6725 9 8 2.6884 3.4229 -3.6401 10 6 3.4016 1.0059 -4.5167 11 6 3.8631 1.4510 -5.9058 12 6 4.9373 0.4896 -6.4186 13 6 5.3915 0.9276 -7.7871 14 1 4.9578 1.8042 -8.2452 15 6 6.3616 0.2097 -8.4540 16 7 6.8901 -0.8574 -7.8960 17 14 6.9252 0.7531 -10.1500 18 1 8.0661 1.6939 -10.0147 19 1 7.3525 -0.4339 -10.9335 20 1 5.8048 1.4311 -10.8503 21 6 3.0272 1.4109 1.1382 22 6 4.1123 0.3260 0.9795 23 6 4.4210 -0.1169 2.4320 24 6 3.0254 -0.0865 3.1033 25 6 2.3366 1.1492 2.4881 26 1 -0.3633 0.5270 -0.8822 27 1 -0.3633 -1.0276 -0.0153 28 1 -0.3633 0.5004 0.8976 29 1 3.2228 2.5139 -1.3076 30 1 3.4417 0.7595 -1.5145 31 1 0.8299 1.2108 -2.2560 32 1 4.2503 1.0120 -3.8329 33 1 2.9897 -0.0015 -4.5757 34 1 3.0145 1.4452 -6.5899 35 1 4.2751 2.4584 -5.8464 36 1 5.7860 0.4949 -5.7346 37 1 4.5249 -0.5176 -6.4781 38 1 7.5723 -1.3626 -8.3653 39 1 3.4854 2.4000 1.1387 40 1 3.7306 -0.5132 0.3979 41 1 5.0031 0.7431 0.5096 42 1 5.0972 0.5885 2.9148 43 1 4.8373 -1.1240 2.4518 44 1 3.1237 0.0294 4.1827 45 1 2.4664 -0.9919 2.8671 46 1 2.4603 2.0109 3.1441 47 1 1.2767 0.9479 2.3325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595364546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:09 Heat of formation + Delta-G solvation = -152.815321 kcal Electronic energy + Delta-G solvation = -25535.090371 eV Core-core repulsion = 21843.843459 eV Total energy + Delta-G solvation = -3691.246911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.81902 -37.07839 -36.89346 -35.76881 -34.99864 -34.65905 -32.17855 -31.12629 -28.98834 -27.79904 -27.13109 -26.27711 -23.72106 -22.80192 -20.84157 -20.69102 -20.01481 -19.12079 -17.62194 -17.01525 -16.73431 -16.46923 -16.18563 -15.69882 -15.50335 -15.15633 -14.63956 -14.52642 -14.45532 -14.06478 -13.70888 -13.47815 -13.17179 -12.65475 -12.56440 -12.27127 -12.09239 -11.94432 -11.84951 -11.77768 -11.75924 -11.41205 -11.26577 -11.24304 -11.20592 -10.92661 -10.90919 -10.84404 -10.79447 -10.74266 -10.42621 -9.94246 -9.80248 -9.69793 -9.30780 -9.06948 -8.40044 -6.04925 -4.07933 0.47289 2.83040 3.30967 3.37043 3.40541 3.41166 3.93432 4.19778 4.34640 4.40967 4.43149 4.47748 4.61144 4.72692 4.93293 5.01980 5.06166 5.14066 5.20451 5.23032 5.27953 5.31567 5.31724 5.33993 5.36603 5.43862 5.54737 5.56766 5.66361 5.70802 5.75027 5.88914 5.91694 6.00678 6.06764 6.21955 6.27714 6.46134 6.84890 6.87789 6.89279 7.58071 7.68058 7.93175 8.33705 8.98329 9.56679 11.06293 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.002773 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.657639 B =10094.009029 C =11112.741275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.371 6.371 3 C 0.089 3.911 4 H 0.072 0.928 5 C 0.100 3.900 6 N -1.124 6.124 7 S 2.600 3.400 8 O -0.965 6.965 9 O -0.963 6.963 10 C -0.607 4.607 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.099 4.099 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.114 4.114 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.411 0.589 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.261 0.739 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.759 1.761 23.744 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.289 6.289 3 C 0.030 3.970 4 H 0.090 0.910 5 C -0.027 4.027 6 N -0.882 5.882 7 S 2.696 3.304 8 O -0.955 6.955 9 O -0.953 6.953 10 C -0.739 4.739 11 C -0.145 4.145 12 C -0.008 4.008 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.118 4.118 22 C -0.158 4.158 23 C -0.162 4.162 24 C -0.158 4.158 25 C -0.152 4.152 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.245 0.755 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.739 2.319 23.299 25.759 hybrid contribution 0.178 -0.362 -0.729 0.833 sum -10.560 1.957 22.570 24.995 Atomic orbital electron populations 1.22914 0.81315 1.02974 0.99731 1.87954 1.19174 1.26977 1.94838 1.22340 0.95751 0.85527 0.93389 0.91023 1.21800 0.91349 1.02904 0.86648 1.55692 1.22071 1.82481 1.27966 1.05301 0.76145 0.76086 0.72837 1.93573 1.44804 1.87362 1.69762 1.93562 1.80692 1.37626 1.83413 1.30521 1.17049 1.16368 1.09969 1.21504 1.01761 1.01758 0.89516 1.19060 0.92120 0.93706 0.95872 1.21255 1.21407 1.11891 1.01902 0.92383 1.25021 0.96290 0.94922 0.98149 1.69956 1.27836 1.17371 1.38238 0.86556 0.79059 0.78142 0.84055 1.20568 1.21175 1.19757 1.22075 0.95630 1.00339 0.93795 1.22435 0.97559 0.98662 0.97173 1.22478 0.96771 1.01140 0.95780 1.22300 0.96229 0.98241 0.99011 1.22097 0.99672 0.98100 0.95324 0.94113 0.89419 0.94017 0.89174 0.90478 0.75519 0.85493 0.85222 0.91598 0.91577 0.96111 0.96106 0.92900 0.89609 0.90107 0.91473 0.91799 0.91660 0.92230 0.91509 0.92041 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.36 101.05 1.05 1.23 16 2 O -0.37 -3.27 8.67 -35.23 -0.31 -3.57 16 3 C 0.09 0.74 1.89 -26.73 -0.05 0.69 16 4 H 0.07 0.54 7.62 -51.93 -0.40 0.14 16 5 C 0.10 0.96 5.51 -4.05 -0.02 0.94 16 6 N -1.12 -12.38 5.85 -10.61 -0.06 -12.45 16 7 S 2.60 38.30 5.46 -107.50 -0.59 37.72 16 8 O -0.96 -17.04 18.08 -57.54 -1.04 -18.08 16 9 O -0.96 -16.76 17.50 -57.54 -1.01 -17.77 16 10 C -0.61 -9.43 6.07 37.16 0.23 -9.20 16 11 C -0.11 -2.16 5.16 -26.73 -0.14 -2.30 16 12 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 13 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 17 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.10 -0.74 2.83 -89.51 -0.25 -0.99 16 22 C -0.12 -0.97 5.29 -25.04 -0.13 -1.10 16 23 C -0.12 -0.91 6.91 -24.70 -0.17 -1.08 16 24 C -0.12 -0.84 6.83 -25.07 -0.17 -1.01 16 25 C -0.11 -0.78 6.22 -25.61 -0.16 -0.94 16 26 H 0.04 0.26 6.56 -51.93 -0.34 -0.08 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.23 7.53 -51.93 -0.39 -0.16 16 29 H 0.09 0.85 7.70 -51.92 -0.40 0.45 16 30 H 0.08 0.71 7.37 -51.92 -0.38 0.32 16 31 H 0.41 3.97 6.69 -34.47 -0.23 3.74 16 32 H 0.13 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.13 1.84 8.14 -51.92 -0.42 1.41 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.75 7.02 -51.93 -0.36 0.38 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.43 6.64 -51.93 -0.34 0.09 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -34.81 383.47 -10.19 -45.00 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.31 Total: -0.56 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -0.38 Total: -26.79 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.67 Total: -38.37 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -2.35 Total: -39.42 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 38.30 SS G_CDS: -0.59 Total: 37.72 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.81 -10.19 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595364546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.813 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds