Wall clock time and date at job start Tue Mar 31 2020 12:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00220 * 2 1 4 4 H 1.08996 * 109.46769 * 340.23147 * 3 2 1 5 5 C 1.52994 * 109.47072 * 100.23361 * 3 2 1 6 6 N 1.46498 * 109.47104 * 294.08356 * 5 3 2 7 7 S 1.65606 * 120.00023 * 164.25361 * 6 5 3 8 8 O 1.42102 * 104.27867 * 181.07461 * 7 6 5 9 9 O 1.42104 * 104.27641 * 308.93110 * 7 6 5 10 10 C 1.81400 * 104.44576 * 65.00176 * 7 6 5 11 11 C 1.53008 * 109.46766 * 180.02562 * 10 7 6 12 12 C 1.53000 * 109.46894 * 180.02562 * 11 10 7 13 13 C 1.50700 * 109.46991 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00235 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00237 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99600 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00376 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46886 * 60.00175 * 17 15 13 19 19 H 1.48497 * 109.47311 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47283 * 300.00773 * 17 15 13 21 21 C 1.53004 * 109.46946 * 220.23338 * 3 2 1 22 22 C 1.54262 * 110.02941 * 172.47427 * 21 3 2 23 23 C 1.54885 * 104.19641 * 217.10558 * 22 21 3 24 24 C 1.54890 * 102.74755 * 37.94383 * 23 22 21 25 25 C 1.53870 * 110.03109 * 55.31155 * 21 3 2 26 26 H 1.08997 * 109.46894 * 54.07047 * 1 2 3 27 27 H 1.09001 * 109.46497 * 294.07278 * 1 2 3 28 28 H 1.08999 * 109.46971 * 174.07661 * 1 2 3 29 29 H 1.09002 * 109.47530 * 54.08479 * 5 3 2 30 30 H 1.08999 * 109.47035 * 174.08375 * 5 3 2 31 31 H 0.96994 * 120.00376 * 344.25799 * 6 5 3 32 32 H 1.08996 * 109.47263 * 299.99841 * 10 7 6 33 33 H 1.08996 * 109.47584 * 60.00599 * 10 7 6 34 34 H 1.08996 * 109.47035 * 299.99901 * 11 10 7 35 35 H 1.08998 * 109.47373 * 60.00012 * 11 10 7 36 36 H 1.09005 * 109.47037 * 300.00010 * 12 11 10 37 37 H 1.08996 * 109.47709 * 59.99871 * 12 11 10 38 38 H 0.97005 * 119.99917 * 179.97438 * 16 15 13 39 39 H 1.08999 * 110.01370 * 293.91597 * 21 3 2 40 40 H 1.09005 * 110.49063 * 335.78592 * 22 21 3 41 41 H 1.09001 * 110.48422 * 98.42515 * 22 21 3 42 42 H 1.09004 * 110.75840 * 279.63172 * 23 22 21 43 43 H 1.09005 * 110.91915 * 156.33220 * 23 22 21 44 44 H 1.08998 * 110.48349 * 203.37861 * 24 23 22 45 45 H 1.08999 * 110.60082 * 80.79417 * 24 23 22 46 46 H 1.09004 * 110.03148 * 238.56688 * 25 21 3 47 47 H 1.09003 * 110.03703 * 359.97438 * 25 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2746 2.0307 -0.3476 5 6 2.4519 1.6671 1.4195 6 7 1.2735 1.7882 2.2815 7 16 1.4483 1.7842 3.9283 8 8 0.1201 1.8911 4.4220 9 8 2.2383 0.6333 4.1940 10 6 2.3846 3.2958 4.2876 11 6 2.6138 3.4072 5.7963 12 6 3.4029 4.6824 6.0995 13 6 3.6281 4.7924 7.5855 14 1 3.2469 4.0289 8.2475 15 6 4.3217 5.8672 8.1001 16 7 4.7864 6.7967 7.2939 17 14 4.6003 6.0040 9.9421 18 1 5.3658 4.8230 10.4159 19 1 5.3663 7.2416 10.2364 20 1 3.2897 6.0561 10.6384 21 6 3.2238 1.3233 -0.9317 22 6 3.7479 2.7657 -1.0891 23 6 4.1917 2.8490 -2.5706 24 6 3.1068 2.0180 -3.2997 25 6 2.8161 0.8481 -2.3373 26 1 -0.3633 0.6030 -0.8321 27 1 -0.3632 0.4192 0.9383 28 1 -0.3633 -1.0222 -0.1061 29 1 3.1064 0.8861 1.8066 30 1 2.9887 2.6156 1.4025 31 1 0.3909 1.8707 1.8877 32 1 3.3464 3.2577 3.7763 33 1 1.8225 4.1627 3.9403 34 1 1.6522 3.4451 6.3081 35 1 3.1761 2.5403 6.1434 36 1 4.3646 4.6449 5.5877 37 1 2.8403 5.5491 5.7526 38 1 5.2741 7.5531 7.6559 39 1 4.0094 0.6812 -0.5336 40 1 2.9535 3.4844 -0.8878 41 1 4.5961 2.9377 -0.4265 42 1 5.1764 2.4011 -2.7048 43 1 4.1877 3.8814 -2.9206 44 1 3.4872 1.6445 -4.2504 45 1 2.2083 2.6146 -3.4573 46 1 3.4045 -0.0243 -2.6217 47 1 1.7539 0.6042 -2.3556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595364547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:14 Heat of formation + Delta-G solvation = -152.522501 kcal Electronic energy + Delta-G solvation = -25454.388098 eV Core-core repulsion = 21763.153884 eV Total energy + Delta-G solvation = -3691.234214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.74999 -37.31734 -36.87876 -35.74788 -34.96936 -34.67644 -32.19202 -31.15546 -29.00906 -27.81701 -27.17459 -26.23490 -23.73827 -22.70963 -20.95594 -20.71691 -20.10936 -19.11338 -17.58041 -17.17671 -16.75380 -16.48812 -15.99894 -15.74192 -15.59854 -15.25044 -14.64293 -14.52535 -14.49450 -14.05531 -13.74721 -13.56675 -13.27389 -12.58890 -12.31011 -12.28808 -12.13328 -11.94043 -11.82642 -11.77300 -11.56499 -11.46454 -11.39232 -11.33031 -11.23723 -11.20645 -10.94701 -10.90092 -10.87702 -10.66576 -10.44617 -9.97747 -9.95534 -9.60223 -9.30765 -9.07602 -8.40974 -6.06276 -4.09339 0.46324 2.83216 3.31926 3.35704 3.39033 3.39717 3.94100 4.19801 4.26516 4.40556 4.41928 4.45875 4.60337 4.71079 4.90945 5.01794 5.09718 5.13793 5.15183 5.18735 5.22954 5.25832 5.30120 5.32626 5.35780 5.39426 5.46108 5.51443 5.59427 5.65242 5.75199 5.82962 5.88734 5.92339 6.01802 6.07816 6.25980 6.43951 6.81718 6.86716 6.91637 7.55820 7.65953 7.91637 8.32207 8.96637 9.55335 11.04920 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016691 B = 0.002780 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.141595 B =10068.493365 C =11411.987717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.091 3.909 4 H 0.070 0.930 5 C 0.093 3.907 6 N -1.124 6.124 7 S 2.599 3.401 8 O -0.965 6.965 9 O -0.959 6.959 10 C -0.609 4.609 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.527 4.527 14 H 0.058 0.942 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.093 4.093 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.112 4.112 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.410 0.590 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.547 -9.539 -23.210 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.292 6.292 3 C 0.032 3.968 4 H 0.088 0.912 5 C -0.034 4.034 6 N -0.882 5.882 7 S 2.695 3.305 8 O -0.955 6.955 9 O -0.949 6.949 10 C -0.740 4.740 11 C -0.146 4.146 12 C -0.007 4.007 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.113 4.113 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.165 4.165 25 C -0.150 4.150 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.244 0.756 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.497 -10.260 -22.561 25.386 hybrid contribution -0.081 1.067 0.588 1.221 sum -5.578 -9.193 -21.973 24.463 Atomic orbital electron populations 1.22909 0.81207 1.02945 0.99874 1.87950 1.19420 1.27042 1.94808 1.22460 0.95569 0.85382 0.93380 0.91191 1.21924 0.87837 1.02265 0.91335 1.55750 1.14612 1.91904 1.25983 1.05348 0.75259 0.77494 0.72361 1.93573 1.35794 1.87981 1.78165 1.93575 1.72386 1.45837 1.83071 1.30542 1.14496 1.20142 1.08865 1.21505 1.02294 1.03687 0.87071 1.19054 0.94738 0.90145 0.96763 1.21221 1.35354 1.07556 0.92400 0.92418 1.25019 0.95522 0.95672 0.98138 1.69950 1.37346 1.11368 1.34807 0.86609 0.78397 0.77418 0.85333 1.20100 1.21243 1.20122 1.21931 0.96571 0.97630 0.95149 1.22487 1.01115 0.95335 0.97148 1.22483 0.98763 1.00080 0.94879 1.22404 0.98812 0.96965 0.98334 1.22076 1.01689 0.97955 0.93298 0.93981 0.93904 0.89535 0.89082 0.90550 0.75618 0.85513 0.85317 0.91586 0.91535 0.96121 0.96146 0.92841 0.89673 0.91137 0.90793 0.91353 0.91466 0.91813 0.91844 0.91607 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.63 101.05 1.07 1.29 16 2 O -0.37 -3.76 9.49 -35.23 -0.33 -4.10 16 3 C 0.09 0.77 1.60 -26.73 -0.04 0.73 16 4 H 0.07 0.50 7.47 -51.93 -0.39 0.11 16 5 C 0.09 0.90 5.73 -4.05 -0.02 0.88 16 6 N -1.12 -12.25 5.57 -10.62 -0.06 -12.31 16 7 S 2.60 38.52 5.46 -107.50 -0.59 37.94 16 8 O -0.96 -17.01 18.08 -57.54 -1.04 -18.05 16 9 O -0.96 -17.27 17.49 -57.54 -1.01 -18.28 16 10 C -0.61 -9.27 6.07 37.16 0.23 -9.04 16 11 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 12 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 13 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 C -0.09 -0.71 2.70 -89.50 -0.24 -0.95 16 22 C -0.12 -0.83 5.43 -25.08 -0.14 -0.97 16 23 C -0.12 -0.78 6.91 -24.74 -0.17 -0.95 16 24 C -0.13 -0.79 6.83 -25.07 -0.17 -0.96 16 25 C -0.11 -0.79 6.18 -25.62 -0.16 -0.95 16 26 H 0.04 0.25 7.98 -51.93 -0.41 -0.16 16 27 H 0.04 0.34 6.22 -51.93 -0.32 0.02 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 1.00 7.68 -51.93 -0.40 0.60 16 30 H 0.08 0.60 7.33 -51.93 -0.38 0.22 16 31 H 0.41 3.74 6.78 -34.47 -0.23 3.50 16 32 H 0.13 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.13 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.45 7.77 -51.93 -0.40 0.05 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.48 7.26 -51.93 -0.38 0.11 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -35.24 385.54 -10.21 -45.45 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -8.38 Total: -1.06 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -0.33 Total: -26.18 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.68 Total: -38.11 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -2.38 Total: -40.43 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 38.52 SS G_CDS: -0.59 Total: 37.94 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.24 -10.21 -45.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595364547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.069 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds