Wall clock time and date at job start Tue Mar 31 2020 12:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00220 * 2 1 4 4 H 1.08996 * 109.46769 * 340.23147 * 3 2 1 5 5 C 1.52994 * 109.47072 * 100.23361 * 3 2 1 6 6 N 1.46498 * 109.47104 * 294.08356 * 5 3 2 7 7 S 1.65606 * 120.00023 * 164.25361 * 6 5 3 8 8 O 1.42102 * 104.27867 * 181.07461 * 7 6 5 9 9 O 1.42104 * 104.27641 * 308.93110 * 7 6 5 10 10 C 1.81400 * 104.44576 * 65.00176 * 7 6 5 11 11 C 1.53008 * 109.46766 * 180.02562 * 10 7 6 12 12 C 1.53000 * 109.46894 * 180.02562 * 11 10 7 13 13 C 1.50700 * 109.46991 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00235 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00237 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99600 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00376 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46886 * 60.00175 * 17 15 13 19 19 H 1.48497 * 109.47311 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47283 * 300.00773 * 17 15 13 21 21 C 1.53004 * 109.46946 * 220.23338 * 3 2 1 22 22 C 1.54262 * 110.02941 * 172.47427 * 21 3 2 23 23 C 1.54885 * 104.19641 * 217.10558 * 22 21 3 24 24 C 1.54890 * 102.74755 * 37.94383 * 23 22 21 25 25 C 1.53870 * 110.03109 * 55.31155 * 21 3 2 26 26 H 1.08997 * 109.46894 * 54.07047 * 1 2 3 27 27 H 1.09001 * 109.46497 * 294.07278 * 1 2 3 28 28 H 1.08999 * 109.46971 * 174.07661 * 1 2 3 29 29 H 1.09002 * 109.47530 * 54.08479 * 5 3 2 30 30 H 1.08999 * 109.47035 * 174.08375 * 5 3 2 31 31 H 0.96994 * 120.00376 * 344.25799 * 6 5 3 32 32 H 1.08996 * 109.47263 * 299.99841 * 10 7 6 33 33 H 1.08996 * 109.47584 * 60.00599 * 10 7 6 34 34 H 1.08996 * 109.47035 * 299.99901 * 11 10 7 35 35 H 1.08998 * 109.47373 * 60.00012 * 11 10 7 36 36 H 1.09005 * 109.47037 * 300.00010 * 12 11 10 37 37 H 1.08996 * 109.47709 * 59.99871 * 12 11 10 38 38 H 0.97005 * 119.99917 * 179.97438 * 16 15 13 39 39 H 1.08999 * 110.01370 * 293.91597 * 21 3 2 40 40 H 1.09005 * 110.49063 * 335.78592 * 22 21 3 41 41 H 1.09001 * 110.48422 * 98.42515 * 22 21 3 42 42 H 1.09004 * 110.75840 * 279.63172 * 23 22 21 43 43 H 1.09005 * 110.91915 * 156.33220 * 23 22 21 44 44 H 1.08998 * 110.48349 * 203.37861 * 24 23 22 45 45 H 1.08999 * 110.60082 * 80.79417 * 24 23 22 46 46 H 1.09004 * 110.03148 * 238.56688 * 25 21 3 47 47 H 1.09003 * 110.03703 * 359.97438 * 25 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2746 2.0307 -0.3476 5 6 2.4519 1.6671 1.4195 6 7 1.2735 1.7882 2.2815 7 16 1.4483 1.7842 3.9283 8 8 0.1201 1.8911 4.4220 9 8 2.2383 0.6333 4.1940 10 6 2.3846 3.2958 4.2876 11 6 2.6138 3.4072 5.7963 12 6 3.4029 4.6824 6.0995 13 6 3.6281 4.7924 7.5855 14 1 3.2469 4.0289 8.2475 15 6 4.3217 5.8672 8.1001 16 7 4.7864 6.7967 7.2939 17 14 4.6003 6.0040 9.9421 18 1 5.3658 4.8230 10.4159 19 1 5.3663 7.2416 10.2364 20 1 3.2897 6.0561 10.6384 21 6 3.2238 1.3233 -0.9317 22 6 3.7479 2.7657 -1.0891 23 6 4.1917 2.8490 -2.5706 24 6 3.1068 2.0180 -3.2997 25 6 2.8161 0.8481 -2.3373 26 1 -0.3633 0.6030 -0.8321 27 1 -0.3632 0.4192 0.9383 28 1 -0.3633 -1.0222 -0.1061 29 1 3.1064 0.8861 1.8066 30 1 2.9887 2.6156 1.4025 31 1 0.3909 1.8707 1.8877 32 1 3.3464 3.2577 3.7763 33 1 1.8225 4.1627 3.9403 34 1 1.6522 3.4451 6.3081 35 1 3.1761 2.5403 6.1434 36 1 4.3646 4.6449 5.5877 37 1 2.8403 5.5491 5.7526 38 1 5.2741 7.5531 7.6559 39 1 4.0094 0.6812 -0.5336 40 1 2.9535 3.4844 -0.8878 41 1 4.5961 2.9377 -0.4265 42 1 5.1764 2.4011 -2.7048 43 1 4.1877 3.8814 -2.9206 44 1 3.4872 1.6445 -4.2504 45 1 2.2083 2.6146 -3.4573 46 1 3.4045 -0.0243 -2.6217 47 1 1.7539 0.6042 -2.3556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595364547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:13 Heat of formation + Delta-G solvation = -177.087036 kcal Electronic energy + Delta-G solvation = -25455.453296 eV Core-core repulsion = 21763.153884 eV Total energy + Delta-G solvation = -3692.299412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.38277 -38.21175 -37.90276 -37.07474 -36.46997 -35.84201 -34.16580 -31.80490 -29.65867 -29.52642 -27.77553 -26.93777 -25.62787 -23.41391 -22.43227 -21.45426 -20.83688 -20.17508 -18.73774 -18.55860 -17.84542 -17.62112 -17.14457 -16.60561 -16.57129 -16.46198 -16.08325 -15.78070 -15.12817 -15.09938 -14.55219 -14.45628 -14.12890 -14.04761 -13.92976 -13.51939 -13.25473 -13.22495 -13.14834 -12.96765 -12.84960 -12.73445 -12.65160 -12.21271 -12.15090 -12.04550 -11.88483 -11.84460 -11.80629 -11.74914 -11.43803 -11.39196 -11.22931 -11.13932 -10.71641 -10.56958 -10.18090 -8.22777 -6.33624 -0.76214 1.40193 1.42529 1.50496 1.75106 2.39774 2.71832 2.80830 3.10753 3.21033 3.60028 3.67435 3.76191 3.87725 3.92781 3.98535 4.13046 4.31764 4.39207 4.47043 4.48581 4.55934 4.63009 4.63943 4.65530 4.72166 4.75690 4.85511 4.90568 4.91138 4.94703 5.01570 5.06575 5.11991 5.15733 5.32112 5.40121 5.45128 5.51071 5.55008 5.63124 5.79332 6.01139 6.19796 6.28437 6.81651 7.35566 8.88447 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016691 B = 0.002780 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.141595 B =10068.493365 C =11411.987717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.395 6.395 3 C 0.093 3.907 4 H 0.088 0.912 5 C 0.083 3.917 6 N -1.108 6.108 7 S 2.627 3.373 8 O -0.993 6.993 9 O -0.991 6.991 10 C -0.607 4.607 11 C -0.108 4.108 12 C 0.032 3.968 13 C -0.554 4.554 14 H 0.059 0.941 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.268 1.268 21 C -0.093 4.093 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.111 4.111 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.421 0.579 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.265 0.735 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.941 -9.358 -23.982 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.314 6.314 3 C 0.033 3.967 4 H 0.106 0.894 5 C -0.043 4.043 6 N -0.871 5.871 7 S 2.723 3.277 8 O -0.983 6.983 9 O -0.981 6.981 10 C -0.738 4.738 11 C -0.147 4.147 12 C -0.006 4.006 13 C -0.592 4.592 14 H 0.077 0.923 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.786 3.214 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.112 4.112 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.149 4.149 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.258 0.742 32 H 0.165 0.835 33 H 0.167 0.833 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.023 0.977 37 H 0.022 0.978 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.906 -10.086 -23.332 26.096 hybrid contribution 0.042 0.991 0.745 1.241 sum -5.865 -9.094 -22.587 25.046 Atomic orbital electron populations 1.23069 0.80284 1.03828 1.00509 1.87931 1.20614 1.28033 1.94858 1.22538 0.96276 0.85312 0.92524 0.89399 1.22187 0.87234 1.03147 0.91728 1.55331 1.15819 1.91480 1.24421 1.04292 0.73943 0.76506 0.72984 1.93530 1.37123 1.88154 1.79486 1.93535 1.73049 1.47336 1.84189 1.30479 1.16305 1.21531 1.05474 1.21323 1.01424 1.01082 0.90848 1.18949 0.94401 0.91968 0.95283 1.21719 1.35531 1.07824 0.94161 0.92272 1.25916 0.95175 0.95298 1.03058 1.70060 1.37982 1.11934 1.36893 0.85551 0.78630 0.77726 0.79490 1.19280 1.20562 1.19283 1.21923 0.95988 0.98114 0.95193 1.22515 1.01331 0.94803 0.97523 1.22494 0.98733 1.00444 0.94576 1.22393 0.99001 0.96572 0.98257 1.22055 1.01449 0.98193 0.93202 0.91996 0.94240 0.89015 0.90520 0.88239 0.74212 0.83486 0.83275 0.91633 0.91641 0.97721 0.97771 0.92605 0.90664 0.90415 0.90814 0.91499 0.90889 0.91353 0.91344 0.92079 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.63 113.37 1.21 1.48 16 2 O -0.40 -7.44 9.49 -148.98 -1.41 -8.86 16 3 C 0.09 1.40 1.60 30.59 0.05 1.45 16 4 H 0.09 1.01 7.47 -2.39 -0.02 0.99 16 5 C 0.08 1.48 5.73 86.38 0.50 1.97 16 6 N -1.11 -22.24 5.57 -187.50 -1.04 -23.28 16 7 S 2.63 75.19 5.46 -56.49 -0.31 74.88 16 8 O -0.99 -34.14 18.08 -127.65 -2.31 -36.45 16 9 O -0.99 -35.27 17.49 -127.65 -2.23 -37.51 16 10 C -0.61 -17.69 6.07 71.98 0.44 -17.26 16 11 C -0.11 -4.35 5.16 30.60 0.16 -4.19 16 12 C 0.03 1.65 4.97 29.85 0.15 1.80 16 13 C -0.55 -31.50 9.11 25.60 0.23 -31.26 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 15 C 0.00 0.22 5.46 84.65 0.46 0.68 16 16 N -0.93 -55.38 13.29 21.45 0.28 -55.10 16 17 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 C -0.09 -1.28 2.70 -10.07 -0.03 -1.31 16 22 C -0.12 -1.45 5.43 31.67 0.17 -1.28 16 23 C -0.12 -1.35 6.91 31.88 0.22 -1.13 16 24 C -0.12 -1.31 6.83 31.67 0.22 -1.10 16 25 C -0.11 -1.42 6.18 31.31 0.19 -1.23 16 26 H 0.06 0.61 7.98 -2.39 -0.02 0.59 16 27 H 0.04 0.57 6.22 -2.39 -0.01 0.55 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.62 7.68 -2.39 -0.02 1.60 16 30 H 0.10 1.31 7.33 -2.39 -0.02 1.30 16 31 H 0.42 6.81 6.78 -96.75 -0.66 6.16 16 32 H 0.15 3.67 8.14 -2.39 -0.02 3.65 16 33 H 0.15 3.74 8.14 -2.39 -0.02 3.72 16 34 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 37 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 0.80 7.77 -2.38 -0.02 0.78 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.06 0.84 7.26 -2.39 -0.02 0.82 16 Total: -1.00 -75.17 385.54 -0.76 -75.93 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.28 Total: 15.61 kcal Atomic # 6 Polarization: -55.32 SS G_CDS: 3.96 Total: -51.36 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -0.76 Total: -78.38 kcal Atomic # 8 Polarization: -76.85 SS G_CDS: -5.95 Total: -82.81 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 75.19 SS G_CDS: -0.31 Total: 74.88 kcal Total: -75.17 -0.76 -75.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595364547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.157 kcal (2) G-P(sol) polarization free energy of solvation -75.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds