Wall clock time and date at job start Tue Mar 31 2020 12:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00110 * 2 1 4 4 H 1.08996 * 109.47289 * 358.13686 * 3 2 1 5 5 C 1.53006 * 109.47047 * 118.13580 * 3 2 1 6 6 N 1.46503 * 109.46647 * 299.99836 * 5 3 2 7 7 S 1.65601 * 119.99602 * 164.99684 * 6 5 3 8 8 O 1.42098 * 104.28097 * 308.93412 * 7 6 5 9 9 O 1.42101 * 104.27832 * 181.07272 * 7 6 5 10 10 C 1.81401 * 104.44680 * 65.00170 * 7 6 5 11 11 C 1.53003 * 109.46971 * 179.97438 * 10 7 6 12 12 C 1.50703 * 109.47063 * 180.02562 * 11 10 7 13 13 H 1.07993 * 119.99876 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99823 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00090 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99747 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47402 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47251 * 120.00060 * 16 14 12 19 19 H 1.48503 * 109.46924 * 240.00128 * 16 14 12 20 20 C 1.52996 * 109.47382 * 238.13456 * 3 2 1 21 21 C 1.53005 * 109.47245 * 174.68591 * 20 3 2 22 22 C 1.53001 * 109.47266 * 180.02562 * 21 20 3 23 23 C 1.52997 * 109.47408 * 59.99331 * 22 21 20 24 24 C 1.52995 * 109.47374 * 300.00544 * 23 22 21 25 25 C 1.52996 * 109.47276 * 59.99736 * 24 23 22 26 26 H 1.09002 * 109.47476 * 57.19630 * 1 2 3 27 27 H 1.08998 * 109.47228 * 177.20030 * 1 2 3 28 28 H 1.09001 * 109.47105 * 297.20068 * 1 2 3 29 29 H 1.08996 * 109.46833 * 180.02562 * 5 3 2 30 30 H 1.08996 * 109.46989 * 59.99923 * 5 3 2 31 31 H 0.96995 * 120.00243 * 345.00190 * 6 5 3 32 32 H 1.08994 * 109.47216 * 299.99645 * 10 7 6 33 33 H 1.08998 * 109.47072 * 60.00149 * 10 7 6 34 34 H 1.09007 * 109.47372 * 299.99861 * 11 10 7 35 35 H 1.09004 * 109.47382 * 60.00163 * 11 10 7 36 36 H 0.96998 * 120.00185 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.47174 * 294.68045 * 20 3 2 38 38 H 1.09001 * 109.46588 * 299.99812 * 21 20 3 39 39 H 1.08991 * 109.47045 * 59.99647 * 21 20 3 40 40 H 1.09004 * 109.46703 * 299.99798 * 22 21 20 41 41 H 1.08995 * 109.46982 * 180.02562 * 22 21 20 42 42 H 1.09006 * 109.47293 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.46807 * 60.00530 * 23 22 21 44 44 H 1.09004 * 109.47142 * 299.99781 * 24 23 22 45 45 H 1.08997 * 109.47413 * 180.02562 * 24 23 22 46 46 H 1.09007 * 109.47143 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.47549 * 60.00252 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2197 2.0552 -0.0334 5 6 2.8391 1.4947 1.2721 6 7 1.9742 1.3451 2.4451 7 16 2.6429 1.1282 3.9445 8 8 3.5606 0.0579 3.7675 9 8 1.5246 0.9986 4.8116 10 6 3.5276 2.6772 4.2739 11 6 4.1961 2.6005 5.6480 12 6 4.9306 3.8876 5.9219 13 1 4.9211 4.6811 5.1894 14 6 5.6137 4.0525 7.1082 15 7 5.6247 3.0864 8.0004 16 14 6.5235 5.6481 7.4480 17 1 6.3578 6.5679 6.2939 18 1 5.9697 6.2829 8.6709 19 1 7.9667 5.3619 7.6490 20 6 2.9133 1.4617 -1.2250 21 6 3.4306 2.8998 -1.2973 22 6 4.3333 3.0562 -2.5227 23 6 3.5350 2.7371 -3.7883 24 6 3.0177 1.2990 -3.7161 25 6 2.1150 1.1427 -2.4907 26 1 -0.3634 0.5567 -0.8638 27 1 -0.3633 -1.0264 -0.0502 28 1 -0.3633 0.4698 0.9140 29 1 3.2821 2.4905 1.2723 30 1 3.6296 0.7450 1.3055 31 1 1.0100 1.3731 2.3435 32 1 4.2876 2.8316 3.5079 33 1 2.8227 3.5085 4.2591 34 1 3.4358 2.4464 6.4138 35 1 4.9010 1.7692 5.6633 36 1 6.1050 3.2025 8.8351 37 1 3.7568 0.7759 -1.1445 38 1 2.5872 3.5856 -1.3778 39 1 3.9990 3.1272 -0.3955 40 1 5.1767 2.3703 -2.4426 41 1 4.7021 4.0805 -2.5739 42 1 4.1782 2.8481 -4.6613 43 1 2.6916 3.4230 -3.8685 44 1 3.8611 0.6131 -3.6359 45 1 2.4494 1.0715 -4.6179 46 1 1.7469 0.1180 -2.4390 47 1 1.2717 1.8285 -2.5708 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595376304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:23 Heat of formation + Delta-G solvation = -157.774157 kcal Electronic energy + Delta-G solvation = -25821.660121 eV Core-core repulsion = 22130.198178 eV Total energy + Delta-G solvation = -3691.461943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.79577 -37.53035 -36.54011 -35.40744 -34.87153 -33.88564 -32.12528 -31.15500 -30.98366 -28.02162 -26.28545 -25.59589 -23.57173 -22.65661 -21.70774 -21.11820 -20.07223 -18.86006 -17.46716 -16.86375 -16.69599 -16.40258 -15.78529 -15.39135 -15.02101 -14.85424 -14.54528 -14.41365 -14.37558 -14.28908 -13.73731 -13.64819 -13.29469 -12.73188 -12.53117 -12.41888 -12.37145 -11.95178 -11.74698 -11.58340 -11.53838 -11.51482 -11.45069 -11.35946 -11.09457 -11.01978 -10.94903 -10.73934 -10.57785 -10.39573 -10.38073 -10.28193 -9.80612 -9.68562 -9.39522 -8.96486 -8.50572 -6.12326 -4.17863 0.82448 3.16906 3.25161 3.32375 3.35637 3.50224 4.24996 4.33300 4.39197 4.43315 4.49337 4.69443 4.75975 4.80216 4.98651 5.00371 5.07230 5.14192 5.20869 5.22940 5.25395 5.26509 5.28871 5.35522 5.46576 5.51089 5.53254 5.62301 5.68543 5.74235 5.79667 5.85748 5.87587 5.90226 5.97911 6.03853 6.11083 6.20241 6.49308 6.99748 7.10776 7.31100 7.37270 7.80787 8.17821 8.85811 9.46893 10.98788 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014548 B = 0.003231 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.143299 B = 8663.761878 C =10230.416425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.089 3.911 4 H 0.070 0.930 5 C 0.103 3.897 6 N -1.124 6.124 7 S 2.593 3.407 8 O -0.964 6.964 9 O -0.969 6.969 10 C -0.590 4.590 11 C 0.027 3.973 12 C -0.520 4.520 13 H 0.062 0.938 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.095 4.095 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.110 4.110 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.408 0.592 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 -1.143 -24.127 25.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.029 3.971 4 H 0.088 0.912 5 C -0.024 4.024 6 N -0.881 5.881 7 S 2.691 3.309 8 O -0.954 6.954 9 O -0.959 6.959 10 C -0.724 4.724 11 C -0.012 4.012 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.115 4.115 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.148 4.148 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.241 0.759 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.168 -2.188 -23.424 24.904 hybrid contribution 0.043 1.737 0.025 1.738 sum -8.125 -0.451 -23.400 24.774 Atomic orbital electron populations 1.22874 0.81325 1.02852 0.99724 1.87962 1.19260 1.26988 1.94812 1.22384 0.95611 0.85507 0.93570 0.91231 1.21745 0.93866 1.02102 0.84692 1.55687 1.16624 1.92144 1.23606 1.05538 0.74960 0.78164 0.72261 1.93543 1.65950 1.51421 1.84483 1.93546 1.51027 1.87080 1.64283 1.30454 1.12595 1.18701 1.10609 1.18970 0.96146 0.99861 0.86199 1.21041 1.31974 1.00069 1.02826 0.92001 1.25074 0.96416 0.96996 0.96049 1.69963 1.42246 1.32288 1.08320 0.86417 0.79494 0.83081 0.78303 1.19655 1.20814 1.20789 1.21453 0.98656 0.97730 0.93613 1.21671 0.99717 0.95537 0.98774 1.21514 0.98255 1.01592 0.94296 1.21551 0.99716 0.96800 0.97716 1.21527 0.99510 0.96886 0.97741 1.21493 0.97772 1.01939 0.93550 0.94109 0.89621 0.94072 0.90583 0.89346 0.75930 0.86356 0.86157 0.94841 0.94784 0.92579 0.89817 0.91781 0.91046 0.91730 0.91848 0.92242 0.92179 0.91877 0.92239 0.91200 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 101.05 1.08 1.32 16 2 O -0.37 -4.11 9.31 -35.23 -0.33 -4.43 16 3 C 0.09 0.85 1.91 -26.73 -0.05 0.80 16 4 H 0.07 0.56 7.60 -51.93 -0.39 0.17 16 5 C 0.10 1.18 5.58 -4.04 -0.02 1.16 16 6 N -1.12 -14.92 5.75 -10.61 -0.06 -14.98 16 7 S 2.59 47.13 5.46 -107.50 -0.59 46.54 16 8 O -0.96 -20.61 17.50 -57.54 -1.01 -21.61 16 9 O -0.97 -20.42 18.08 -57.54 -1.04 -21.46 16 10 C -0.59 -11.21 6.01 37.16 0.22 -10.99 16 11 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 12 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 16 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.10 -0.80 1.97 -90.62 -0.18 -0.98 16 21 C -0.12 -0.90 4.97 -26.73 -0.13 -1.03 16 22 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 23 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 24 C -0.12 -0.82 5.92 -26.74 -0.16 -0.97 16 25 C -0.11 -0.83 5.00 -26.73 -0.13 -0.96 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.33 7.31 -51.93 -0.38 -0.05 16 29 H 0.08 0.72 6.58 -51.93 -0.34 0.38 16 30 H 0.09 1.13 7.69 -51.93 -0.40 0.73 16 31 H 0.41 4.65 7.78 -34.47 -0.27 4.39 16 32 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 33 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 34 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.55 6.57 -51.93 -0.34 0.21 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.58 7.55 -51.93 -0.39 0.19 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -35.21 382.97 -10.17 -45.38 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.40 Total: 0.66 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: -0.24 Total: -26.19 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.68 Total: -40.79 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -2.37 Total: -47.51 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 47.13 SS G_CDS: -0.59 Total: 46.54 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.21 -10.17 -45.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595376304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.390 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds