Wall clock time and date at job start Tue Mar 31 2020 12:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00110 * 2 1 4 4 H 1.08996 * 109.47289 * 358.13686 * 3 2 1 5 5 C 1.53006 * 109.47047 * 118.13580 * 3 2 1 6 6 N 1.46503 * 109.46647 * 299.99836 * 5 3 2 7 7 S 1.65601 * 119.99602 * 164.99684 * 6 5 3 8 8 O 1.42098 * 104.28097 * 308.93412 * 7 6 5 9 9 O 1.42101 * 104.27832 * 181.07272 * 7 6 5 10 10 C 1.81401 * 104.44680 * 65.00170 * 7 6 5 11 11 C 1.53003 * 109.46971 * 179.97438 * 10 7 6 12 12 C 1.50703 * 109.47063 * 180.02562 * 11 10 7 13 13 H 1.07993 * 119.99876 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99823 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00090 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99747 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47402 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47251 * 120.00060 * 16 14 12 19 19 H 1.48503 * 109.46924 * 240.00128 * 16 14 12 20 20 C 1.52996 * 109.47382 * 238.13456 * 3 2 1 21 21 C 1.53005 * 109.47245 * 174.68591 * 20 3 2 22 22 C 1.53001 * 109.47266 * 180.02562 * 21 20 3 23 23 C 1.52997 * 109.47408 * 59.99331 * 22 21 20 24 24 C 1.52995 * 109.47374 * 300.00544 * 23 22 21 25 25 C 1.52996 * 109.47276 * 59.99736 * 24 23 22 26 26 H 1.09002 * 109.47476 * 57.19630 * 1 2 3 27 27 H 1.08998 * 109.47228 * 177.20030 * 1 2 3 28 28 H 1.09001 * 109.47105 * 297.20068 * 1 2 3 29 29 H 1.08996 * 109.46833 * 180.02562 * 5 3 2 30 30 H 1.08996 * 109.46989 * 59.99923 * 5 3 2 31 31 H 0.96995 * 120.00243 * 345.00190 * 6 5 3 32 32 H 1.08994 * 109.47216 * 299.99645 * 10 7 6 33 33 H 1.08998 * 109.47072 * 60.00149 * 10 7 6 34 34 H 1.09007 * 109.47372 * 299.99861 * 11 10 7 35 35 H 1.09004 * 109.47382 * 60.00163 * 11 10 7 36 36 H 0.96998 * 120.00185 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.47174 * 294.68045 * 20 3 2 38 38 H 1.09001 * 109.46588 * 299.99812 * 21 20 3 39 39 H 1.08991 * 109.47045 * 59.99647 * 21 20 3 40 40 H 1.09004 * 109.46703 * 299.99798 * 22 21 20 41 41 H 1.08995 * 109.46982 * 180.02562 * 22 21 20 42 42 H 1.09006 * 109.47293 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.46807 * 60.00530 * 23 22 21 44 44 H 1.09004 * 109.47142 * 299.99781 * 24 23 22 45 45 H 1.08997 * 109.47413 * 180.02562 * 24 23 22 46 46 H 1.09007 * 109.47143 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.47549 * 60.00252 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2197 2.0552 -0.0334 5 6 2.8391 1.4947 1.2721 6 7 1.9742 1.3451 2.4451 7 16 2.6429 1.1282 3.9445 8 8 3.5606 0.0579 3.7675 9 8 1.5246 0.9986 4.8116 10 6 3.5276 2.6772 4.2739 11 6 4.1961 2.6005 5.6480 12 6 4.9306 3.8876 5.9219 13 1 4.9211 4.6811 5.1894 14 6 5.6137 4.0525 7.1082 15 7 5.6247 3.0864 8.0004 16 14 6.5235 5.6481 7.4480 17 1 6.3578 6.5679 6.2939 18 1 5.9697 6.2829 8.6709 19 1 7.9667 5.3619 7.6490 20 6 2.9133 1.4617 -1.2250 21 6 3.4306 2.8998 -1.2973 22 6 4.3333 3.0562 -2.5227 23 6 3.5350 2.7371 -3.7883 24 6 3.0177 1.2990 -3.7161 25 6 2.1150 1.1427 -2.4907 26 1 -0.3634 0.5567 -0.8638 27 1 -0.3633 -1.0264 -0.0502 28 1 -0.3633 0.4698 0.9140 29 1 3.2821 2.4905 1.2723 30 1 3.6296 0.7450 1.3055 31 1 1.0100 1.3731 2.3435 32 1 4.2876 2.8316 3.5079 33 1 2.8227 3.5085 4.2591 34 1 3.4358 2.4464 6.4138 35 1 4.9010 1.7692 5.6633 36 1 6.1050 3.2025 8.8351 37 1 3.7568 0.7759 -1.1445 38 1 2.5872 3.5856 -1.3778 39 1 3.9990 3.1272 -0.3955 40 1 5.1767 2.3703 -2.4426 41 1 4.7021 4.0805 -2.5739 42 1 4.1782 2.8481 -4.6613 43 1 2.6916 3.4230 -3.8685 44 1 3.8611 0.6131 -3.6359 45 1 2.4494 1.0715 -4.6179 46 1 1.7469 0.1180 -2.4390 47 1 1.2717 1.8285 -2.5708 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595376304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:22 Heat of formation + Delta-G solvation = -182.912086 kcal Electronic energy + Delta-G solvation = -25822.750183 eV Core-core repulsion = 22130.198178 eV Total energy + Delta-G solvation = -3692.552005 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48265 -38.22872 -38.11405 -37.01140 -35.90308 -35.88338 -33.11947 -32.83563 -31.54020 -28.75792 -27.58771 -27.02761 -24.29061 -23.60633 -23.24857 -21.86390 -20.68152 -20.22902 -19.09045 -18.31284 -17.66870 -17.53381 -17.00241 -16.68299 -16.51521 -16.22922 -15.49335 -15.38375 -14.99930 -14.94487 -14.89492 -14.63047 -14.41563 -14.32859 -13.71171 -13.45570 -13.28712 -13.19876 -13.11111 -12.94601 -12.93513 -12.76912 -12.66504 -12.51142 -12.24742 -12.20772 -12.09351 -11.93439 -11.73543 -11.64129 -11.33380 -11.19536 -11.12934 -10.85043 -10.65053 -10.57222 -10.11604 -8.25343 -6.39368 -0.67753 1.41926 1.42544 1.55837 1.85350 2.38784 2.77682 2.86425 3.08376 3.27251 3.66039 3.74511 3.91333 4.00236 4.09285 4.10708 4.14965 4.35425 4.39765 4.47338 4.49585 4.55231 4.60083 4.65990 4.70210 4.71512 4.77586 4.79297 4.85188 4.90691 4.97246 5.12876 5.24942 5.28103 5.29080 5.31028 5.32329 5.35091 5.46402 5.53868 5.64080 5.69413 6.06179 6.08761 6.33040 6.74920 7.30962 8.87285 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014548 B = 0.003231 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.143299 B = 8663.761878 C =10230.416425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.397 6.397 3 C 0.091 3.909 4 H 0.091 0.909 5 C 0.090 3.910 6 N -1.104 6.104 7 S 2.618 3.382 8 O -1.000 7.000 9 O -1.001 7.001 10 C -0.585 4.585 11 C 0.019 3.981 12 C -0.537 4.537 13 H 0.078 0.922 14 C -0.006 4.006 15 N -0.936 5.936 16 Si 0.975 3.025 17 H -0.254 1.254 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.092 4.092 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.106 4.106 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.420 0.580 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.006 0.994 35 H 0.006 0.994 36 H 0.267 0.733 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 1.090 -26.260 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.316 6.316 3 C 0.032 3.968 4 H 0.109 0.891 5 C -0.036 4.036 6 N -0.866 5.866 7 S 2.715 3.285 8 O -0.990 6.990 9 O -0.991 6.991 10 C -0.717 4.717 11 C -0.020 4.020 12 C -0.576 4.576 13 H 0.096 0.904 14 C -0.204 4.204 15 N -0.575 5.575 16 Si 0.799 3.201 17 H -0.177 1.177 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.111 4.111 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.143 4.143 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.062 0.938 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.256 0.744 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.680 0.048 -25.569 27.002 hybrid contribution 0.158 0.979 0.617 1.168 sum -8.522 1.027 -24.952 26.387 Atomic orbital electron populations 1.23050 0.80112 1.03630 1.00745 1.87941 1.20768 1.27962 1.94898 1.22450 0.96061 0.85642 0.92695 0.89093 1.22088 0.93704 1.03135 0.84634 1.55157 1.17440 1.91733 1.22236 1.04513 0.73933 0.77303 0.72788 1.93499 1.67158 1.52961 1.85335 1.93495 1.51951 1.87373 1.66288 1.30316 1.13691 1.20354 1.07387 1.18839 0.95265 0.98531 0.89393 1.21558 1.31759 1.00983 1.03268 0.90351 1.26140 0.97472 1.00860 0.95922 1.70113 1.43540 1.34858 1.09015 0.85249 0.77795 0.78483 0.78619 1.17697 1.20488 1.20461 1.21416 0.98075 0.98102 0.93541 1.21686 1.00128 0.94955 0.98911 1.21527 0.98087 1.01729 0.94457 1.21539 0.99899 0.96517 0.97604 1.21523 0.99246 0.97069 0.97785 1.21446 0.98002 1.01583 0.93281 0.92151 0.89271 0.93798 0.87949 0.91055 0.74398 0.83745 0.83574 0.97609 0.97591 0.92432 0.91325 0.90685 0.91169 0.92455 0.91318 0.91787 0.91602 0.92663 0.91476 0.92169 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.70 113.37 1.21 1.52 16 2 O -0.40 -8.21 9.31 -148.98 -1.39 -9.60 16 3 C 0.09 1.55 1.91 30.59 0.06 1.60 16 4 H 0.09 1.16 7.60 -2.39 -0.02 1.14 16 5 C 0.09 1.91 5.58 86.38 0.48 2.39 16 6 N -1.10 -27.57 5.75 -187.48 -1.08 -28.65 16 7 S 2.62 94.72 5.46 -56.49 -0.31 94.41 16 8 O -1.00 -43.50 17.50 -127.65 -2.23 -45.73 16 9 O -1.00 -42.47 18.08 -127.65 -2.31 -44.78 16 10 C -0.59 -21.63 6.01 71.98 0.43 -21.20 16 11 C 0.02 0.97 4.98 29.85 0.15 1.12 16 12 C -0.54 -29.49 9.11 25.60 0.23 -29.26 16 13 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 14 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 15 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 16 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 17 H -0.25 -10.32 7.11 99.48 0.71 -9.62 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 20 C -0.09 -1.38 1.97 -10.79 -0.02 -1.40 16 21 C -0.12 -1.51 4.97 30.60 0.15 -1.36 16 22 C -0.12 -1.48 5.92 30.59 0.18 -1.30 16 23 C -0.12 -1.30 5.92 30.59 0.18 -1.12 16 24 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 25 C -0.11 -1.39 5.00 30.59 0.15 -1.24 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 0.61 7.31 -2.39 -0.02 0.59 16 29 H 0.10 1.64 6.58 -2.39 -0.02 1.62 16 30 H 0.07 1.79 7.69 -2.39 -0.02 1.77 16 31 H 0.42 8.73 7.78 -96.75 -0.75 7.98 16 32 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 33 H 0.15 4.63 8.14 -2.39 -0.02 4.61 16 34 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 35 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.90 6.57 -2.39 -0.02 0.88 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 42 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 44 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.06 0.92 7.55 -2.38 -0.02 0.90 16 47 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -77.14 382.97 -0.97 -78.10 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.18 Total: 19.35 kcal Atomic # 6 Polarization: -55.19 SS G_CDS: 3.86 Total: -51.34 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -0.79 Total: -85.46 kcal Atomic # 8 Polarization: -94.18 SS G_CDS: -5.93 Total: -100.11 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 94.72 SS G_CDS: -0.31 Total: 94.41 kcal Total: -77.14 -0.97 -78.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595376304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.808 kcal (2) G-P(sol) polarization free energy of solvation -77.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds