Wall clock time and date at job start Tue Mar 31 2020 12:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99861 * 2 1 4 4 H 1.09002 * 109.55137 * 309.87749 * 3 2 1 5 5 C 1.52875 * 109.58627 * 189.88022 * 3 2 1 6 6 N 1.47146 * 108.61000 * 187.92546 * 5 3 2 7 7 C 1.34778 * 120.98164 * 230.50472 * 6 5 3 8 8 O 1.21280 * 120.00026 * 359.71112 * 7 6 5 9 9 C 1.50701 * 120.00274 * 179.43989 * 7 6 5 10 10 C 1.52995 * 109.47530 * 180.27105 * 9 7 6 11 11 H 1.08999 * 109.47134 * 54.99776 * 10 9 7 12 12 C 1.50702 * 109.47122 * 295.00538 * 10 9 7 13 13 H 1.07998 * 120.00671 * 121.36622 * 12 10 9 14 14 C 1.37882 * 119.99504 * 301.36011 * 12 10 9 15 15 N 1.31518 * 120.00015 * 6.18440 * 14 12 10 16 16 Si 1.86805 * 119.99739 * 186.18429 * 14 12 10 17 17 H 1.48497 * 109.47303 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.46853 * 120.00231 * 16 14 12 19 19 H 1.48499 * 109.46897 * 239.99644 * 16 14 12 20 20 C 1.50700 * 109.47428 * 175.00006 * 10 9 7 21 21 C 1.38236 * 119.99725 * 211.37338 * 20 10 9 22 22 C 1.38237 * 119.99535 * 179.78787 * 21 20 10 23 23 C 1.38239 * 120.00228 * 0.43744 * 22 21 20 24 24 C 1.38237 * 119.99583 * 359.82112 * 23 22 21 25 25 C 1.38231 * 119.99807 * 31.64649 * 20 10 9 26 26 C 1.47151 * 118.03685 * 50.22229 * 6 5 3 27 27 C 1.53295 * 108.38538 * 309.72129 * 26 6 5 28 28 O 1.42959 * 109.22355 * 52.30323 * 27 26 6 29 29 H 1.08996 * 109.47411 * 299.99790 * 1 2 3 30 30 H 1.08998 * 109.47302 * 60.00446 * 1 2 3 31 31 H 1.09002 * 109.46564 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.61724 * 68.10050 * 5 3 2 33 33 H 1.09006 * 109.52409 * 307.68556 * 5 3 2 34 34 H 1.08998 * 109.46741 * 300.27493 * 9 7 6 35 35 H 1.09001 * 109.47005 * 60.26798 * 9 7 6 36 36 H 0.96995 * 119.99404 * 180.02562 * 15 14 12 37 37 H 1.07998 * 120.00321 * 359.97438 * 21 20 10 38 38 H 1.08000 * 120.00033 * 180.27524 * 22 21 20 39 39 H 1.07997 * 120.00281 * 179.83246 * 23 22 21 40 40 H 1.08004 * 119.99788 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.00019 * 359.97438 * 25 20 10 42 42 H 1.09003 * 109.67830 * 69.44550 * 26 6 5 43 43 H 1.09008 * 109.68236 * 189.99310 * 26 6 5 44 44 H 1.09006 * 109.51075 * 172.22707 * 27 26 6 45 45 H 1.08997 * 109.51064 * 292.37112 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.5569 1.9066 -0.7883 5 6 3.5149 1.1966 -0.2471 6 7 4.1198 2.5240 -0.0542 7 6 4.9381 3.0554 -0.9840 8 8 5.1897 2.4356 -1.9957 9 6 5.5356 4.4221 -0.7694 10 6 6.4135 4.7889 -1.9675 11 1 5.8291 4.7091 -2.8841 12 6 7.5877 3.8468 -2.0370 13 1 7.7467 3.2461 -2.9203 14 6 8.4592 3.7519 -0.9727 15 7 8.2004 4.3897 0.1480 16 14 10.0074 2.7175 -1.1227 17 1 10.0655 2.1066 -2.4749 18 1 11.1998 3.5783 -0.9161 19 1 9.9874 1.6449 -0.0959 20 6 6.9120 6.2024 -1.8111 21 6 7.1411 6.9822 -2.9293 22 6 7.5942 8.2802 -2.7857 23 6 7.8268 8.7956 -1.5242 24 6 7.6027 8.0139 -0.4062 25 6 7.1455 6.7173 -0.5497 26 6 3.7998 3.2570 1.1811 27 6 2.2770 3.2678 1.3562 28 8 1.7833 1.9292 1.2663 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.6946 0.8560 -1.2668 33 1 3.9498 0.4889 0.4588 34 1 4.7362 5.1560 -0.6665 35 1 6.1415 4.4156 0.1366 36 1 8.8136 4.3231 0.8965 37 1 6.9633 6.5783 -3.9150 38 1 7.7690 8.8910 -3.6591 39 1 8.1834 9.8088 -1.4120 40 1 7.7841 8.4166 0.5794 41 1 6.9703 6.1067 0.3237 42 1 4.2639 2.7603 2.0332 43 1 4.1682 4.2802 1.1067 44 1 2.0256 3.6838 2.3319 45 1 1.8248 3.8761 0.5729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597538447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:52 Heat of formation + Delta-G solvation = -86.529263 kcal Electronic energy + Delta-G solvation = -27747.697990 eV Core-core repulsion = 23923.881507 eV Total energy + Delta-G solvation = -3823.816484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.09569 -38.67133 -37.95213 -36.83899 -34.48964 -34.13741 -31.26784 -30.82335 -29.85389 -28.72916 -27.77192 -26.54927 -25.39984 -23.76404 -22.74366 -21.78571 -21.28791 -19.83446 -18.55959 -17.33935 -16.94137 -16.59742 -16.23083 -15.94976 -15.60879 -15.11701 -14.98223 -14.47990 -14.29081 -14.08243 -13.93267 -13.80158 -13.64770 -13.18579 -12.73615 -12.52606 -12.30043 -12.13671 -11.80063 -11.71125 -11.53621 -11.32141 -11.24085 -11.02039 -10.93752 -10.76835 -10.44672 -10.23324 -10.20468 -9.99386 -9.96633 -9.34861 -9.25957 -8.77762 -8.47039 -8.19436 -7.84381 -7.48516 -6.03696 -4.11055 2.44235 2.53031 3.04011 3.28803 3.34463 3.36928 3.43392 3.56376 4.10438 4.41379 4.77526 4.79666 4.92349 5.02300 5.10871 5.19733 5.22498 5.26177 5.31197 5.50352 5.53629 5.55874 5.77297 5.84973 5.86335 5.94393 5.98033 6.04667 6.30017 6.39701 6.54225 6.65168 6.73401 6.73898 6.87234 7.07976 7.09909 7.12859 7.23327 7.42999 7.49432 7.64598 7.92358 7.94495 8.08436 8.14340 8.31086 8.86628 9.05252 9.52961 10.91382 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.004055 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.063134 B = 6902.558864 C = 7867.282052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.366 6.366 3 C 0.246 3.754 4 H 0.057 0.943 5 C 0.097 3.903 6 N -0.630 5.630 7 C 0.531 3.469 8 O -0.521 6.521 9 C -0.137 4.137 10 C 0.087 3.913 11 H 0.036 0.964 12 C -0.470 4.470 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.031 4.031 21 C -0.131 4.131 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.144 4.144 25 C -0.076 4.076 26 C 0.076 3.924 27 C 0.059 3.941 28 O -0.408 6.408 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.140 0.860 36 H 0.261 0.739 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.148 0.852 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.385 1.009 4.002 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.284 6.284 3 C 0.149 3.851 4 H 0.074 0.926 5 C -0.027 4.027 6 N -0.369 5.369 7 C 0.323 3.677 8 O -0.395 6.395 9 C -0.177 4.177 10 C 0.068 3.932 11 H 0.055 0.945 12 C -0.508 4.508 13 H 0.079 0.921 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.032 4.032 21 C -0.149 4.149 22 C -0.160 4.160 23 C -0.171 4.171 24 C -0.162 4.162 25 C -0.095 4.095 26 C -0.048 4.048 27 C -0.018 4.018 28 O -0.329 6.329 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.157 0.843 36 H 0.071 0.929 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.166 0.834 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.104 0.403 3.715 12.668 hybrid contribution 1.013 -0.193 -0.034 1.032 sum -11.091 0.210 3.681 11.688 Atomic orbital electron populations 1.22768 0.80312 1.02837 1.00531 1.87991 1.20676 1.25737 1.93985 1.23240 0.93770 0.82773 0.85329 0.92591 1.21608 0.89949 0.86418 1.04727 1.48306 1.49700 1.17987 1.20894 1.21282 0.75962 0.89185 0.81316 1.90614 1.58135 1.62866 1.27853 1.22054 0.98353 0.89716 1.07565 1.17655 0.94096 0.88767 0.92691 0.94516 1.21057 1.08146 1.19834 1.01724 0.92055 1.24865 0.98130 0.95637 0.95244 1.69520 1.36796 1.43462 1.03315 0.86505 0.83250 0.79950 0.78244 1.19797 1.21075 1.21216 1.20344 0.95576 0.95024 0.92261 1.20928 1.01768 0.93889 0.98362 1.20809 1.02732 0.96102 0.96394 1.20793 1.04048 0.99028 0.93269 1.21089 1.02363 0.95549 0.97207 1.21612 0.96025 0.92773 0.99074 1.22364 0.95285 0.99260 0.87894 1.22985 0.93549 0.82331 1.02906 1.87769 1.80656 1.28643 1.35840 0.93081 0.93992 0.89397 0.87643 0.90622 0.93081 0.84311 0.92860 0.87611 0.88043 0.88258 0.88024 0.83441 0.90750 0.87761 0.87447 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.89 101.05 1.10 1.42 16 2 O -0.37 -5.06 10.62 -59.03 -0.63 -5.68 16 3 C 0.25 3.46 3.28 37.09 0.12 3.58 16 4 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 5 C 0.10 1.57 6.26 -3.75 -0.02 1.54 16 6 N -0.63 -10.81 3.03 -172.53 -0.52 -11.33 16 7 C 0.53 11.19 7.46 -10.98 -0.08 11.10 16 8 O -0.52 -12.81 14.45 5.56 0.08 -12.73 16 9 C -0.14 -2.84 2.59 -27.88 -0.07 -2.91 16 10 C 0.09 2.05 1.98 -92.92 -0.18 1.86 16 11 H 0.04 0.88 7.89 -51.93 -0.41 0.47 16 12 C -0.47 -12.45 7.27 -34.44 -0.25 -12.70 16 13 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 14 C 0.06 1.57 5.14 -17.82 -0.09 1.48 16 15 N -0.89 -22.13 7.74 55.43 0.43 -21.70 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 C -0.03 -0.70 4.68 -104.63 -0.49 -1.19 16 21 C -0.13 -2.74 9.70 -39.58 -0.38 -3.12 16 22 C -0.14 -2.67 10.05 -39.58 -0.40 -3.06 16 23 C -0.15 -2.81 10.05 -39.58 -0.40 -3.20 16 24 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 25 C -0.08 -1.63 7.56 -39.59 -0.30 -1.93 16 26 C 0.08 1.02 6.55 -3.53 -0.02 0.99 16 27 C 0.06 0.67 6.98 37.31 0.26 0.93 16 28 O -0.41 -5.56 10.23 -59.03 -0.60 -6.17 16 29 H 0.05 0.50 7.89 -51.93 -0.41 0.09 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.11 1.84 7.08 -51.93 -0.37 1.47 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.92 7.66 -51.93 -0.40 0.53 16 35 H 0.14 3.05 4.52 -51.93 -0.23 2.81 16 36 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 37 H 0.11 2.09 8.06 -52.49 -0.42 1.66 16 38 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 41 H 0.15 3.21 4.97 -52.49 -0.26 2.95 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.10 1.33 6.05 -51.92 -0.31 1.01 16 44 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -29.81 358.77 -9.06 -38.87 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.59 Total: 5.39 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -1.61 Total: -8.38 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: -0.09 Total: -33.04 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -1.15 Total: -24.59 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.81 -9.06 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597538447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.661 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds