Wall clock time and date at job start Tue Mar 31 2020 12:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99861 * 2 1 4 4 H 1.09002 * 109.55137 * 309.87749 * 3 2 1 5 5 C 1.52875 * 109.58627 * 189.88022 * 3 2 1 6 6 N 1.47146 * 108.61000 * 187.92546 * 5 3 2 7 7 C 1.34778 * 120.98164 * 230.50472 * 6 5 3 8 8 O 1.21280 * 120.00026 * 359.71112 * 7 6 5 9 9 C 1.50701 * 120.00274 * 179.43989 * 7 6 5 10 10 C 1.52995 * 109.47530 * 180.27105 * 9 7 6 11 11 H 1.08999 * 109.47134 * 54.99776 * 10 9 7 12 12 C 1.50702 * 109.47122 * 295.00538 * 10 9 7 13 13 H 1.07998 * 120.00671 * 121.36622 * 12 10 9 14 14 C 1.37882 * 119.99504 * 301.36011 * 12 10 9 15 15 N 1.31518 * 120.00015 * 6.18440 * 14 12 10 16 16 Si 1.86805 * 119.99739 * 186.18429 * 14 12 10 17 17 H 1.48497 * 109.47303 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.46853 * 120.00231 * 16 14 12 19 19 H 1.48499 * 109.46897 * 239.99644 * 16 14 12 20 20 C 1.50700 * 109.47428 * 175.00006 * 10 9 7 21 21 C 1.38236 * 119.99725 * 211.37338 * 20 10 9 22 22 C 1.38237 * 119.99535 * 179.78787 * 21 20 10 23 23 C 1.38239 * 120.00228 * 0.43744 * 22 21 20 24 24 C 1.38237 * 119.99583 * 359.82112 * 23 22 21 25 25 C 1.38231 * 119.99807 * 31.64649 * 20 10 9 26 26 C 1.47151 * 118.03685 * 50.22229 * 6 5 3 27 27 C 1.53295 * 108.38538 * 309.72129 * 26 6 5 28 28 O 1.42959 * 109.22355 * 52.30323 * 27 26 6 29 29 H 1.08996 * 109.47411 * 299.99790 * 1 2 3 30 30 H 1.08998 * 109.47302 * 60.00446 * 1 2 3 31 31 H 1.09002 * 109.46564 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.61724 * 68.10050 * 5 3 2 33 33 H 1.09006 * 109.52409 * 307.68556 * 5 3 2 34 34 H 1.08998 * 109.46741 * 300.27493 * 9 7 6 35 35 H 1.09001 * 109.47005 * 60.26798 * 9 7 6 36 36 H 0.96995 * 119.99404 * 180.02562 * 15 14 12 37 37 H 1.07998 * 120.00321 * 359.97438 * 21 20 10 38 38 H 1.08000 * 120.00033 * 180.27524 * 22 21 20 39 39 H 1.07997 * 120.00281 * 179.83246 * 23 22 21 40 40 H 1.08004 * 119.99788 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.00019 * 359.97438 * 25 20 10 42 42 H 1.09003 * 109.67830 * 69.44550 * 26 6 5 43 43 H 1.09008 * 109.68236 * 189.99310 * 26 6 5 44 44 H 1.09006 * 109.51075 * 172.22707 * 27 26 6 45 45 H 1.08997 * 109.51064 * 292.37112 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.5569 1.9066 -0.7883 5 6 3.5149 1.1966 -0.2471 6 7 4.1198 2.5240 -0.0542 7 6 4.9381 3.0554 -0.9840 8 8 5.1897 2.4356 -1.9957 9 6 5.5356 4.4221 -0.7694 10 6 6.4135 4.7889 -1.9675 11 1 5.8291 4.7091 -2.8841 12 6 7.5877 3.8468 -2.0370 13 1 7.7467 3.2461 -2.9203 14 6 8.4592 3.7519 -0.9727 15 7 8.2004 4.3897 0.1480 16 14 10.0074 2.7175 -1.1227 17 1 10.0655 2.1066 -2.4749 18 1 11.1998 3.5783 -0.9161 19 1 9.9874 1.6449 -0.0959 20 6 6.9120 6.2024 -1.8111 21 6 7.1411 6.9822 -2.9293 22 6 7.5942 8.2802 -2.7857 23 6 7.8268 8.7956 -1.5242 24 6 7.6027 8.0139 -0.4062 25 6 7.1455 6.7173 -0.5497 26 6 3.7998 3.2570 1.1811 27 6 2.2770 3.2678 1.3562 28 8 1.7833 1.9292 1.2663 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.6946 0.8560 -1.2668 33 1 3.9498 0.4889 0.4588 34 1 4.7362 5.1560 -0.6665 35 1 6.1415 4.4156 0.1366 36 1 8.8136 4.3231 0.8965 37 1 6.9633 6.5783 -3.9150 38 1 7.7690 8.8910 -3.6591 39 1 8.1834 9.8088 -1.4120 40 1 7.7841 8.4166 0.5794 41 1 6.9703 6.1067 0.3237 42 1 4.2639 2.7603 2.0332 43 1 4.1682 4.2802 1.1067 44 1 2.0256 3.6838 2.3319 45 1 1.8248 3.8761 0.5729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597538447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:51 Heat of formation + Delta-G solvation = -103.362351 kcal Electronic energy + Delta-G solvation = -27748.427928 eV Core-core repulsion = 23923.881507 eV Total energy + Delta-G solvation = -3824.546421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.40638 -40.12914 -39.41737 -37.93394 -36.13304 -35.63431 -33.02929 -32.06403 -31.38545 -30.22600 -29.03979 -27.89637 -26.82051 -24.90914 -24.34962 -23.19202 -22.70465 -21.42333 -20.01298 -18.59973 -18.31786 -17.94133 -17.71369 -17.20879 -17.15834 -16.76964 -16.39830 -15.97460 -15.46027 -15.42382 -15.20265 -15.09787 -14.88788 -14.75287 -14.16144 -14.12126 -13.79128 -13.45895 -13.36752 -13.13313 -13.04433 -12.81189 -12.70791 -12.67442 -12.30790 -12.20566 -12.00823 -11.89735 -11.73443 -11.33487 -11.09360 -11.05822 -10.97926 -10.54136 -10.34447 -9.57187 -9.39594 -9.11262 -7.98198 -6.11065 0.88183 0.99427 1.34544 1.38906 1.48098 1.82410 1.90381 2.26461 2.44355 3.07995 3.18348 3.36555 3.64324 3.69568 3.90474 4.03680 4.18057 4.32177 4.36785 4.41665 4.43366 4.48618 4.51716 4.54676 4.64285 4.68774 4.71983 4.80275 4.83856 4.90146 4.91051 5.08227 5.14754 5.32243 5.50035 5.53469 5.63582 5.69082 5.83550 5.91600 5.95260 6.09442 6.10962 6.35480 6.41206 6.49914 6.58200 6.83793 7.43259 7.52082 8.92084 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.004055 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.063134 B = 6902.558864 C = 7867.282052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.387 6.387 3 C 0.256 3.744 4 H 0.063 0.937 5 C 0.095 3.905 6 N -0.625 5.625 7 C 0.525 3.475 8 O -0.569 6.569 9 C -0.123 4.123 10 C 0.088 3.912 11 H 0.013 0.987 12 C -0.493 4.493 13 H 0.026 0.974 14 C 0.037 3.963 15 N -0.883 5.883 16 Si 0.927 3.073 17 H -0.288 1.288 18 H -0.278 1.278 19 H -0.283 1.283 20 C -0.054 4.054 21 C -0.151 4.151 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.088 4.088 26 C 0.068 3.932 27 C 0.062 3.938 28 O -0.413 6.413 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.263 0.737 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.127 0.873 41 H 0.140 0.860 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.144 0.856 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.179 3.060 5.772 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.305 6.305 3 C 0.159 3.841 4 H 0.081 0.919 5 C -0.029 4.029 6 N -0.362 5.362 7 C 0.317 3.683 8 O -0.447 6.447 9 C -0.163 4.163 10 C 0.068 3.932 11 H 0.032 0.968 12 C -0.531 4.531 13 H 0.045 0.955 14 C -0.162 4.162 15 N -0.522 5.522 16 Si 0.756 3.244 17 H -0.213 1.213 18 H -0.203 1.203 19 H -0.209 1.209 20 C -0.055 4.055 21 C -0.170 4.170 22 C -0.158 4.158 23 C -0.166 4.166 24 C -0.165 4.165 25 C -0.106 4.106 26 C -0.054 4.054 27 C -0.014 4.014 28 O -0.335 6.335 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.149 0.851 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.145 0.855 41 H 0.158 0.842 42 H 0.097 0.903 43 H 0.131 0.869 44 H 0.162 0.838 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.932 2.470 5.542 14.285 hybrid contribution 1.225 -0.798 -0.575 1.572 sum -11.707 1.672 4.967 12.827 Atomic orbital electron populations 1.23006 0.78184 1.04483 1.01257 1.87955 1.22948 1.25500 1.94124 1.22960 0.91936 0.83274 0.85931 0.91942 1.21619 0.92054 0.85780 1.03442 1.48265 1.48410 1.18334 1.21220 1.21393 0.76246 0.89286 0.81384 1.90590 1.60140 1.63946 1.30037 1.21850 0.98524 0.90299 1.05644 1.17547 0.93257 0.89514 0.92845 0.96837 1.20991 1.10082 1.21021 1.00964 0.95547 1.25176 0.99269 0.96435 0.95350 1.69590 1.36743 1.42965 1.02898 0.85977 0.81878 0.79255 0.77320 1.21320 1.20339 1.20915 1.20286 0.97163 0.94565 0.93462 1.21104 1.02693 0.95177 0.97985 1.21159 1.01318 0.95267 0.98081 1.21223 1.02402 1.00460 0.92492 1.21404 1.01346 0.94720 0.99006 1.21559 0.97002 0.93917 0.98152 1.22678 0.97454 0.99238 0.86026 1.23189 0.91385 0.81535 1.05339 1.87778 1.80518 1.29778 1.35381 0.92703 0.92864 0.87394 0.89712 0.91007 0.90442 0.85052 0.92653 0.87898 0.85049 0.84638 0.85464 0.84250 0.90348 0.86895 0.83816 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.89 113.37 1.23 1.71 16 2 O -0.39 -10.38 10.62 -126.22 -1.34 -11.72 16 3 C 0.26 7.02 3.28 71.94 0.24 7.26 16 4 H 0.06 1.64 8.09 -2.39 -0.02 1.62 16 5 C 0.09 3.14 6.26 86.21 0.54 3.68 16 6 N -0.62 -21.62 3.03 -818.15 -2.48 -24.10 16 7 C 0.53 22.86 7.46 87.66 0.65 23.51 16 8 O -0.57 -29.70 14.45 -3.03 -0.04 -29.75 16 9 C -0.12 -5.20 2.59 29.85 0.08 -5.12 16 10 C 0.09 4.28 1.98 -12.29 -0.02 4.25 16 11 H 0.01 0.68 7.89 -2.39 -0.02 0.66 16 12 C -0.49 -27.32 7.27 25.60 0.19 -27.14 16 13 H 0.03 1.59 7.82 -2.91 -0.02 1.57 16 14 C 0.04 1.96 5.14 84.66 0.44 2.40 16 15 N -0.88 -43.78 7.74 21.45 0.17 -43.62 16 16 Si 0.93 44.40 29.54 68.60 2.03 46.43 16 17 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 20 C -0.05 -2.43 4.68 -19.87 -0.09 -2.52 16 21 C -0.15 -6.28 9.70 22.27 0.22 -6.06 16 22 C -0.14 -4.91 10.05 22.27 0.22 -4.69 16 23 C -0.15 -4.87 10.05 22.27 0.22 -4.65 16 24 C -0.15 -5.24 10.05 22.27 0.22 -5.01 16 25 C -0.09 -3.65 7.56 22.27 0.17 -3.48 16 26 C 0.07 1.73 6.55 86.35 0.57 2.30 16 27 C 0.06 1.22 6.98 72.08 0.50 1.72 16 28 O -0.41 -10.42 10.23 -126.22 -1.29 -11.71 16 29 H 0.05 0.96 7.89 -2.39 -0.02 0.94 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 3.15 7.08 -2.39 -0.02 3.13 16 33 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.08 2.78 7.66 -2.39 -0.02 2.76 16 35 H 0.13 5.79 4.52 -2.39 -0.01 5.78 16 36 H 0.26 12.60 8.31 -92.71 -0.77 11.83 16 37 H 0.10 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 39 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 41 H 0.14 5.95 4.97 -2.91 -0.01 5.93 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.11 2.67 6.05 -2.38 -0.01 2.66 16 44 H 0.14 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -66.49 358.77 3.40 -63.09 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.99 Total: 23.20 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 5.37 Total: -11.83 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -2.31 Total: -67.71 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -2.67 Total: -53.18 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -66.49 3.40 -63.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597538447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.267 kcal (2) G-P(sol) polarization free energy of solvation -66.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds