Wall clock time and date at job start Tue Mar 31 2020 12:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00158 * 2 1 4 4 H 1.09004 * 109.55341 * 309.87590 * 3 2 1 5 5 C 1.52874 * 109.58568 * 189.88026 * 3 2 1 6 6 N 1.47151 * 108.60850 * 187.92398 * 5 3 2 7 7 C 1.34777 * 120.97998 * 230.50264 * 6 5 3 8 8 O 1.21278 * 120.00308 * 359.71481 * 7 6 5 9 9 C 1.50709 * 119.99781 * 179.71551 * 7 6 5 10 10 C 1.53007 * 109.46708 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.47066 * 306.00144 * 10 9 7 12 12 C 1.50698 * 109.47431 * 66.00429 * 10 9 7 13 13 H 1.08002 * 119.99628 * 35.42802 * 12 10 9 14 14 C 1.37878 * 119.99900 * 215.43100 * 12 10 9 15 15 N 1.31517 * 119.99675 * 175.73502 * 14 12 10 16 16 Si 1.86793 * 120.00110 * 355.73544 * 14 12 10 17 17 H 1.48504 * 109.47281 * 94.38067 * 16 14 12 18 18 H 1.48500 * 109.47279 * 214.37868 * 16 14 12 19 19 H 1.48497 * 109.47245 * 334.38418 * 16 14 12 20 20 C 1.50699 * 109.46646 * 186.00474 * 10 9 7 21 21 C 1.38234 * 120.00259 * 113.56155 * 20 10 9 22 22 C 1.38233 * 120.00216 * 179.97438 * 21 20 10 23 23 C 1.38231 * 119.99856 * 359.97131 * 22 21 20 24 24 C 1.38228 * 120.00273 * 0.02878 * 23 22 21 25 25 C 1.38231 * 119.99813 * 293.53216 * 20 10 9 26 26 C 1.47152 * 118.03753 * 50.22302 * 6 5 3 27 27 C 1.53295 * 108.38475 * 309.71852 * 26 6 5 28 28 O 1.42960 * 109.51233 * 69.99653 * 3 2 1 29 29 H 1.09001 * 109.47303 * 300.00071 * 1 2 3 30 30 H 1.08999 * 109.47272 * 60.00223 * 1 2 3 31 31 H 1.09009 * 109.47166 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.61783 * 68.10107 * 5 3 2 33 33 H 1.08996 * 109.52617 * 307.68361 * 5 3 2 34 34 H 1.09001 * 109.47079 * 60.00302 * 9 7 6 35 35 H 1.08993 * 109.46828 * 299.99475 * 9 7 6 36 36 H 0.96996 * 119.99860 * 180.02562 * 15 14 12 37 37 H 1.08001 * 119.99630 * 359.97388 * 21 20 10 38 38 H 1.08005 * 119.99678 * 179.69896 * 22 21 20 39 39 H 1.07998 * 119.99821 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00450 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.00392 * 359.97438 * 25 20 10 42 42 H 1.09005 * 109.67852 * 69.44335 * 26 6 5 43 43 H 1.08998 * 109.68067 * 189.95622 * 26 6 5 44 44 H 1.09003 * 109.50968 * 172.22301 * 27 26 6 45 45 H 1.08994 * 109.51080 * 292.37551 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.5570 1.9066 -0.7883 5 6 3.5149 1.1964 -0.2471 6 7 4.1198 2.5239 -0.0542 7 6 4.9382 3.0551 -0.9840 8 8 5.1898 2.4354 -1.9957 9 6 5.5406 4.4193 -0.7665 10 6 6.4235 4.7834 -1.9620 11 1 7.1541 3.9918 -2.1285 12 6 5.5653 4.9414 -3.1907 13 1 4.5734 5.3604 -3.1063 14 6 6.0464 4.5510 -4.4224 15 7 5.2684 4.6105 -5.4811 16 14 7.8030 3.9378 -4.5875 17 1 7.8212 2.4560 -4.4915 18 1 8.3516 4.3553 -5.9027 19 1 8.6329 4.5143 -3.4994 20 6 7.1411 6.0783 -1.6805 21 6 8.5156 6.0892 -1.5344 22 6 9.1739 7.2771 -1.2767 23 6 8.4577 8.4542 -1.1658 24 6 7.0832 8.4434 -1.3119 25 6 6.4248 7.2553 -1.5691 26 6 3.7999 3.2569 1.1810 27 6 2.2770 3.2678 1.3561 28 8 1.7833 1.9291 1.2662 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.6945 0.8558 -1.2668 33 1 3.9497 0.4888 0.4588 34 1 6.1444 4.4094 0.1409 35 1 4.7440 5.1562 -0.6650 36 1 5.6067 4.3355 -6.3476 37 1 9.0752 5.1696 -1.6215 38 1 10.2473 7.2848 -1.1577 39 1 8.9720 9.3822 -0.9641 40 1 6.5236 9.3631 -1.2257 41 1 5.3510 7.2470 -1.6841 42 1 4.2639 2.7602 2.0332 43 1 4.1689 4.2798 1.1068 44 1 2.0258 3.6838 2.3318 45 1 1.8249 3.8760 0.5728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597538449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:57 Heat of formation + Delta-G solvation = -113.356276 kcal Electronic energy + Delta-G solvation = -27501.781527 eV Core-core repulsion = 23676.801737 eV Total energy + Delta-G solvation = -3824.979790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47901 -40.23542 -39.55940 -37.97161 -35.99366 -35.67210 -33.74951 -32.13041 -31.58047 -30.52023 -29.14727 -27.96727 -26.84201 -24.93027 -24.32512 -23.32416 -22.91164 -21.31109 -20.00750 -19.01573 -18.60741 -18.17792 -17.76582 -17.38153 -17.09114 -16.70189 -16.46397 -15.97083 -15.78494 -15.41536 -15.28537 -15.17258 -14.93123 -14.72918 -14.46600 -14.17953 -14.10669 -13.83997 -13.53811 -13.29848 -13.22815 -12.95749 -12.75210 -12.60845 -12.32527 -12.05576 -12.02445 -11.88910 -11.78164 -11.49839 -11.38273 -11.04185 -11.01776 -10.74111 -10.53365 -9.62114 -9.58704 -9.28311 -8.22494 -6.19029 0.70471 0.74943 1.32279 1.36518 1.42545 1.68710 1.85451 2.21549 2.41561 3.04176 3.09984 3.23483 3.59392 3.67381 3.77912 3.98912 4.13321 4.16852 4.28295 4.31259 4.33703 4.39891 4.45144 4.45536 4.49667 4.51182 4.61330 4.63528 4.68565 4.78860 4.85541 4.87463 4.89698 5.07165 5.19248 5.36940 5.41872 5.42905 5.68830 5.79568 5.80329 5.84835 6.04123 6.05643 6.31484 6.37333 6.40937 6.80404 7.34285 7.45522 8.94402 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014513 B = 0.004086 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.881925 B = 6851.385108 C = 8024.013196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.384 6.384 3 C 0.253 3.747 4 H 0.050 0.950 5 C 0.097 3.903 6 N -0.624 5.624 7 C 0.514 3.486 8 O -0.557 6.557 9 C -0.106 4.106 10 C 0.057 3.943 11 H 0.030 0.970 12 C -0.464 4.464 13 H 0.036 0.964 14 C 0.023 3.977 15 N -0.953 5.953 16 Si 0.914 3.086 17 H -0.294 1.294 18 H -0.298 1.298 19 H -0.218 1.218 20 C -0.063 4.063 21 C -0.151 4.151 22 C -0.126 4.126 23 C -0.139 4.139 24 C -0.125 4.125 25 C -0.116 4.116 26 C 0.067 3.933 27 C 0.055 3.945 28 O -0.411 6.411 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.257 0.743 37 H 0.109 0.891 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.120 0.880 44 H 0.148 0.852 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 1.544 19.048 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.303 6.303 3 C 0.156 3.844 4 H 0.067 0.933 5 C -0.027 4.027 6 N -0.362 5.362 7 C 0.304 3.696 8 O -0.433 6.433 9 C -0.146 4.146 10 C 0.038 3.962 11 H 0.049 0.951 12 C -0.502 4.502 13 H 0.054 0.946 14 C -0.173 4.173 15 N -0.595 5.595 16 Si 0.741 3.259 17 H -0.221 1.221 18 H -0.225 1.225 19 H -0.141 1.141 20 C -0.063 4.063 21 C -0.169 4.169 22 C -0.143 4.143 23 C -0.157 4.157 24 C -0.143 4.143 25 C -0.134 4.134 26 C -0.055 4.055 27 C -0.021 4.021 28 O -0.332 6.332 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.127 0.873 38 H 0.156 0.844 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.129 0.871 42 H 0.115 0.885 43 H 0.138 0.862 44 H 0.166 0.834 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.841 0.922 18.465 18.705 hybrid contribution 0.260 -0.490 -1.421 1.525 sum -2.581 0.432 17.044 17.244 Atomic orbital electron populations 1.23002 0.78295 1.04541 1.01095 1.87940 1.22844 1.25389 1.94120 1.22942 0.92464 0.83222 0.85778 0.93283 1.21608 0.91663 0.85885 1.03520 1.48288 1.48317 1.18380 1.21197 1.21280 0.78089 0.88707 0.81481 1.90736 1.60818 1.63170 1.28565 1.21621 1.00521 0.92268 1.00159 1.18014 0.94040 0.91053 0.93120 0.95127 1.20805 0.99857 1.38586 0.90963 0.94598 1.25606 1.00461 0.95275 0.95944 1.70032 1.37802 1.51505 1.00150 0.86245 0.83216 0.78190 0.78226 1.22079 1.22470 1.14089 1.20444 0.93876 0.96728 0.95286 1.21254 0.94209 0.98825 1.02583 1.21325 1.00522 0.92380 1.00122 1.21330 0.94143 0.98569 1.01685 1.21393 0.95250 0.97794 0.99880 1.21008 1.00001 0.92454 0.99986 1.22784 0.97112 0.99559 0.86038 1.23238 0.92297 0.81438 1.05174 1.87778 1.80780 1.29725 1.34922 0.92471 0.93502 0.87172 0.90378 0.89427 0.87284 0.88101 0.93428 0.87288 0.84376 0.83715 0.84324 0.87111 0.88521 0.86233 0.83443 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.89 113.37 1.23 1.75 16 2 O -0.38 -10.56 10.62 -126.22 -1.34 -11.90 16 3 C 0.25 7.09 3.28 71.94 0.24 7.32 16 4 H 0.05 1.47 8.09 -2.38 -0.02 1.45 16 5 C 0.10 3.03 6.26 86.21 0.54 3.57 16 6 N -0.62 -19.04 3.03 -818.16 -2.48 -21.51 16 7 C 0.51 20.34 7.47 87.66 0.65 20.99 16 8 O -0.56 -28.73 14.49 -3.02 -0.04 -28.78 16 9 C -0.11 -3.71 3.34 29.85 0.10 -3.61 16 10 C 0.06 2.54 1.17 -12.28 -0.01 2.53 16 11 H 0.03 1.47 5.06 -2.39 -0.01 1.46 16 12 C -0.46 -25.89 6.86 25.60 0.18 -25.71 16 13 H 0.04 2.19 8.06 -2.91 -0.02 2.16 16 14 C 0.02 1.41 5.47 84.65 0.46 1.88 16 15 N -0.95 -62.48 13.96 21.45 0.30 -62.18 16 16 Si 0.91 47.67 26.94 68.60 1.85 49.52 16 17 H -0.29 -15.96 7.11 99.48 0.71 -15.26 16 18 H -0.30 -15.49 7.11 99.48 0.71 -14.78 16 19 H -0.22 -10.01 4.53 99.48 0.45 -9.56 16 20 C -0.06 -2.45 4.57 -19.87 -0.09 -2.54 16 21 C -0.15 -5.35 8.55 22.27 0.19 -5.16 16 22 C -0.13 -3.64 10.05 22.27 0.22 -3.42 16 23 C -0.14 -3.69 10.05 22.27 0.22 -3.47 16 24 C -0.13 -3.64 10.05 22.27 0.22 -3.41 16 25 C -0.12 -4.15 8.93 22.27 0.20 -3.95 16 26 C 0.07 1.30 6.54 86.35 0.57 1.86 16 27 C 0.05 0.98 6.99 72.08 0.50 1.48 16 28 O -0.41 -9.93 10.23 -126.22 -1.29 -11.22 16 29 H 0.06 1.05 7.89 -2.39 -0.02 1.03 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.08 2.92 7.08 -2.39 -0.02 2.91 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.11 2.97 8.01 -2.39 -0.02 2.96 16 35 H 0.10 3.20 7.56 -2.39 -0.02 3.18 16 36 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 37 H 0.11 3.85 7.09 -2.91 -0.02 3.82 16 38 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 39 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 40 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 41 H 0.11 4.04 7.88 -2.91 -0.02 4.02 16 42 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.12 1.90 6.05 -2.39 -0.01 1.88 16 44 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -80.36 362.57 3.15 -77.21 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.72 Total: 18.74 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 5.43 Total: -9.88 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -2.18 Total: -83.69 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -2.67 Total: -51.90 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.85 Total: 49.52 kcal Total: -80.36 3.15 -77.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597538449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.143 kcal (2) G-P(sol) polarization free energy of solvation -80.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds