Wall clock time and date at job start Tue Mar 31 2020 12:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00056 * 2 1 4 4 C 1.53000 * 109.47069 * 180.02562 * 3 2 1 5 5 O 1.42894 * 109.47281 * 65.00190 * 4 3 2 6 6 C 1.42900 * 114.00116 * 179.97438 * 5 4 3 7 7 H 1.09008 * 110.63817 * 26.86063 * 6 5 4 8 8 C 1.55156 * 110.72094 * 149.99611 * 6 5 4 9 9 C 1.54909 * 101.58318 * 153.86669 * 8 6 5 10 10 N 1.47429 * 104.83124 * 322.99514 * 9 8 6 11 11 C 1.34771 * 125.64806 * 204.09147 * 10 9 8 12 12 O 1.21612 * 120.00162 * 174.76465 * 11 10 9 13 13 C 1.47435 * 120.00135 * 354.75973 * 11 10 9 14 14 C 1.39227 * 120.28104 * 321.68949 * 13 11 10 15 15 C 1.38229 * 120.08899 * 180.28016 * 14 13 11 16 16 C 1.38827 * 120.67551 * 359.70734 * 15 14 13 17 17 C 1.37600 * 120.57266 * 359.97438 * 16 15 14 18 18 C 1.40712 * 119.87893 * 0.02562 * 17 16 15 19 19 C 1.40890 * 120.32553 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99463 * 150.53824 * 19 18 17 21 21 C 1.40271 * 120.00043 * 330.26727 * 19 18 17 22 22 N 1.30628 * 120.00019 * 350.02259 * 21 19 18 23 23 Si 1.86805 * 119.99812 * 170.02243 * 21 19 18 24 24 H 1.48501 * 109.47191 * 60.00008 * 23 21 19 25 25 H 1.48500 * 109.46980 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47194 * 299.99769 * 23 21 19 27 27 C 1.47022 * 108.70377 * 24.35374 * 10 9 8 28 28 H 1.08998 * 109.46924 * 299.99817 * 1 2 3 29 29 H 1.08999 * 109.46939 * 59.99919 * 1 2 3 30 30 H 1.08995 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46908 * 59.99953 * 3 2 1 32 32 H 1.09000 * 109.47208 * 300.00394 * 3 2 1 33 33 H 1.09004 * 109.47228 * 304.99773 * 4 3 2 34 34 H 1.09004 * 109.46979 * 185.00372 * 4 3 2 35 35 H 1.08997 * 111.00323 * 35.79686 * 8 6 5 36 36 H 1.08999 * 111.03965 * 271.95758 * 8 6 5 37 37 H 1.08993 * 110.37225 * 204.15385 * 9 8 6 38 38 H 1.09001 * 110.36402 * 81.82875 * 9 8 6 39 39 H 1.07999 * 119.95828 * 359.97438 * 14 13 11 40 40 H 1.07998 * 119.66079 * 179.69824 * 15 14 13 41 41 H 1.07995 * 119.71230 * 180.02562 * 16 15 14 42 42 H 1.07990 * 120.06051 * 180.02562 * 17 16 15 43 43 H 0.96996 * 119.99687 * 180.02562 * 22 21 19 44 44 H 1.08995 * 109.88145 * 118.13294 * 27 10 9 45 45 H 1.08996 * 109.88299 * 239.29900 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 5.3812 0.4202 -1.3250 7 1 5.8315 0.3373 -0.3358 8 6 5.7326 -0.8167 -2.1934 9 6 7.1335 -0.4317 -2.7307 10 7 7.0588 1.0207 -2.9729 11 6 7.8286 1.7139 -3.8350 12 8 7.6163 2.8962 -4.0245 13 6 8.9282 1.0388 -4.5484 14 6 9.7020 0.0804 -3.8995 15 6 10.7357 -0.5458 -4.5704 16 6 11.0118 -0.2346 -5.8949 17 6 10.2604 0.7035 -6.5647 18 6 9.2025 1.3556 -5.9046 19 6 8.4273 2.3181 -6.5812 20 1 7.3937 2.4687 -6.3070 21 6 8.9998 3.0846 -7.6071 22 7 10.2903 3.0495 -7.8062 23 14 7.9165 4.1555 -8.6884 24 1 7.2093 5.1537 -7.8466 25 1 8.7579 4.8588 -9.6898 26 1 6.9212 3.3047 -9.3890 27 6 6.0097 1.5886 -2.1136 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5682 0.8410 34 1 3.9786 2.1765 0.0890 35 1 5.0203 -0.9360 -3.0098 36 1 5.7820 -1.7202 -1.5856 37 1 7.3420 -0.9610 -3.6603 38 1 7.8991 -0.6533 -1.9871 39 1 9.4977 -0.1705 -2.8692 40 1 11.3347 -1.2847 -4.0589 41 1 11.8229 -0.7337 -6.4042 42 1 10.4821 0.9390 -7.5950 43 1 10.6861 3.5799 -8.5153 44 1 6.4460 2.3113 -1.4243 45 1 5.2488 2.0709 -2.7271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601524919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:46 Heat of formation + Delta-G solvation = -98.811263 kcal Electronic energy + Delta-G solvation = -26630.292166 eV Core-core repulsion = 22805.943095 eV Total energy + Delta-G solvation = -3824.349071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.70654 -38.56802 -37.75248 -36.74166 -35.72364 -33.71532 -31.31507 -30.11854 -29.80992 -29.53648 -27.91786 -26.52017 -25.44265 -23.63490 -22.74922 -21.48291 -21.21530 -20.61165 -18.77743 -17.44836 -17.24026 -16.84160 -16.44633 -16.02521 -15.51861 -15.39353 -15.14594 -14.73828 -14.52257 -14.21467 -13.91283 -13.55242 -13.28466 -12.91302 -12.76436 -12.64996 -12.44114 -12.04798 -11.98409 -11.79477 -11.69674 -11.60110 -11.56474 -11.15795 -11.11328 -10.95192 -10.83014 -10.59478 -10.47339 -9.96502 -9.93614 -9.70092 -9.61592 -9.25140 -8.65348 -8.03203 -7.54058 -7.40825 -6.78457 -4.40361 2.45855 2.84285 3.08409 3.13941 3.25392 3.31577 3.49423 3.78073 3.96132 4.04588 4.56398 4.63256 4.69274 4.77699 4.90667 4.97388 5.05552 5.06392 5.13335 5.24689 5.36957 5.40556 5.46672 5.54350 5.61176 5.79164 5.84155 5.94867 6.01288 6.07281 6.15167 6.24800 6.35145 6.53938 6.84845 6.94275 7.00780 7.13176 7.14490 7.24136 7.47724 7.68713 7.91364 7.98923 8.16478 8.29546 8.59157 8.80345 8.87456 9.27800 10.14541 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.003123 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.961858 B = 8962.844352 C =10310.441985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.061 3.939 5 O -0.364 6.364 6 C 0.078 3.922 7 H 0.076 0.924 8 C -0.129 4.129 9 C 0.108 3.892 10 N -0.627 5.627 11 C 0.592 3.408 12 O -0.534 6.534 13 C -0.255 4.255 14 C -0.059 4.059 15 C -0.248 4.248 16 C -0.094 4.094 17 C -0.154 4.154 18 C 0.146 3.854 19 C -0.422 4.422 20 H 0.084 0.916 21 C 0.074 3.926 22 N -0.790 5.790 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.278 1.278 26 H -0.263 1.263 27 C 0.091 3.909 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.283 0.717 44 H 0.060 0.940 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.222 -5.801 12.828 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.016 4.016 5 O -0.282 6.282 6 C 0.019 3.981 7 H 0.094 0.906 8 C -0.167 4.167 9 C -0.015 4.015 10 N -0.365 5.365 11 C 0.386 3.614 12 O -0.411 6.411 13 C -0.260 4.260 14 C -0.078 4.078 15 C -0.268 4.268 16 C -0.113 4.113 17 C -0.174 4.174 18 C 0.142 3.858 19 C -0.450 4.450 20 H 0.102 0.898 21 C -0.145 4.145 22 N -0.415 5.415 23 Si 0.739 3.261 24 H -0.186 1.186 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.033 4.033 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.141 0.859 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.119 -5.190 12.357 18.070 hybrid contribution -0.345 0.882 -0.120 0.955 sum -12.464 -4.308 12.237 17.991 Atomic orbital electron populations 1.22740 0.81169 1.02804 0.99848 1.87962 1.19509 1.27386 1.95374 1.22577 0.92469 0.85442 1.00939 1.22589 0.93289 0.97871 0.87831 1.88020 1.21092 1.81350 1.37765 1.23143 0.81246 0.95198 0.98508 0.90604 1.22917 0.97129 0.96642 1.00012 1.22290 0.95537 0.82319 1.01349 1.48450 1.37299 1.08140 1.42646 1.18279 0.80758 0.85865 0.76476 1.90706 1.70938 1.15964 1.63482 1.19365 1.03300 1.07743 0.95581 1.20728 0.95399 0.94497 0.97183 1.20273 1.03216 1.07041 0.96238 1.20807 0.98232 0.97670 0.94578 1.21396 0.98525 0.97063 1.00371 1.17411 0.90363 0.89455 0.88566 1.19677 0.98956 1.14334 1.12074 0.89844 1.26008 0.95170 0.96879 0.96418 1.69693 1.11205 1.33509 1.27058 0.86240 0.80464 0.80155 0.79231 1.18626 1.20251 1.18736 1.22188 0.91477 0.95835 0.93807 0.94282 0.93977 0.89618 0.91884 0.92221 0.92342 0.91559 0.89560 0.89700 0.89532 0.91818 0.88832 0.89159 0.89135 0.85882 0.90583 0.92159 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.21 10.67 -40.08 -0.43 -4.63 16 3 C 0.06 0.57 6.32 37.16 0.23 0.80 16 4 C 0.06 0.60 6.15 37.16 0.23 0.83 16 5 O -0.36 -4.77 10.04 -40.08 -0.40 -5.17 16 6 C 0.08 0.98 3.44 -24.89 -0.09 0.89 16 7 H 0.08 0.80 7.82 -51.92 -0.41 0.39 16 8 C -0.13 -1.61 6.81 -24.58 -0.17 -1.78 16 9 C 0.11 1.63 5.24 -2.53 -0.01 1.61 16 10 N -0.63 -11.93 3.32 -171.78 -0.57 -12.50 16 11 C 0.59 14.31 7.01 -12.52 -0.09 14.22 16 12 O -0.53 -14.81 15.44 5.27 0.08 -14.73 16 13 C -0.26 -6.35 5.41 -104.37 -0.56 -6.92 16 14 C -0.06 -1.29 8.20 -39.22 -0.32 -1.61 16 15 C -0.25 -5.32 10.03 -39.37 -0.39 -5.71 16 16 C -0.09 -2.14 10.01 -39.60 -0.40 -2.54 16 17 C -0.15 -3.96 8.65 -38.88 -0.34 -4.29 16 18 C 0.15 3.96 5.56 -106.54 -0.59 3.37 16 19 C -0.42 -11.74 7.73 -37.82 -0.29 -12.04 16 20 H 0.08 2.39 6.76 -52.49 -0.35 2.03 16 21 C 0.07 1.92 5.27 -17.30 -0.09 1.83 16 22 N -0.79 -20.67 10.86 55.56 0.60 -20.07 16 23 Si 0.91 19.78 29.57 -169.99 -5.03 14.76 16 24 H -0.26 -5.82 7.11 56.52 0.40 -5.41 16 25 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 27 C 0.09 1.46 6.66 -3.06 -0.02 1.44 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.39 7.33 -51.93 -0.38 1.01 16 38 H 0.06 0.85 6.97 -51.93 -0.36 0.49 16 39 H 0.09 1.75 5.94 -52.49 -0.31 1.44 16 40 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.12 3.22 6.27 -52.49 -0.33 2.89 16 43 H 0.28 6.73 8.29 -40.82 -0.34 6.39 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -32.42 369.68 -8.73 -41.15 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.77 Total: 4.15 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -1.79 Total: -8.53 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.03 Total: -32.57 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.75 Total: -24.53 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.42 -8.73 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601524919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.659 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds