Wall clock time and date at job start Tue Mar 31 2020 12:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00056 * 2 1 4 4 C 1.53000 * 109.47069 * 180.02562 * 3 2 1 5 5 O 1.42894 * 109.47281 * 65.00190 * 4 3 2 6 6 C 1.42900 * 114.00116 * 179.97438 * 5 4 3 7 7 H 1.09008 * 110.63817 * 26.86063 * 6 5 4 8 8 C 1.55156 * 110.72094 * 149.99611 * 6 5 4 9 9 C 1.54909 * 101.58318 * 153.86669 * 8 6 5 10 10 N 1.47429 * 104.83124 * 322.99514 * 9 8 6 11 11 C 1.34771 * 125.64806 * 204.09147 * 10 9 8 12 12 O 1.21612 * 120.00162 * 174.76465 * 11 10 9 13 13 C 1.47435 * 120.00135 * 354.75973 * 11 10 9 14 14 C 1.39227 * 120.28104 * 321.68949 * 13 11 10 15 15 C 1.38229 * 120.08899 * 180.28016 * 14 13 11 16 16 C 1.38827 * 120.67551 * 359.70734 * 15 14 13 17 17 C 1.37600 * 120.57266 * 359.97438 * 16 15 14 18 18 C 1.40712 * 119.87893 * 0.02562 * 17 16 15 19 19 C 1.40890 * 120.32553 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99463 * 150.53824 * 19 18 17 21 21 C 1.40271 * 120.00043 * 330.26727 * 19 18 17 22 22 N 1.30628 * 120.00019 * 350.02259 * 21 19 18 23 23 Si 1.86805 * 119.99812 * 170.02243 * 21 19 18 24 24 H 1.48501 * 109.47191 * 60.00008 * 23 21 19 25 25 H 1.48500 * 109.46980 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47194 * 299.99769 * 23 21 19 27 27 C 1.47022 * 108.70377 * 24.35374 * 10 9 8 28 28 H 1.08998 * 109.46924 * 299.99817 * 1 2 3 29 29 H 1.08999 * 109.46939 * 59.99919 * 1 2 3 30 30 H 1.08995 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46908 * 59.99953 * 3 2 1 32 32 H 1.09000 * 109.47208 * 300.00394 * 3 2 1 33 33 H 1.09004 * 109.47228 * 304.99773 * 4 3 2 34 34 H 1.09004 * 109.46979 * 185.00372 * 4 3 2 35 35 H 1.08997 * 111.00323 * 35.79686 * 8 6 5 36 36 H 1.08999 * 111.03965 * 271.95758 * 8 6 5 37 37 H 1.08993 * 110.37225 * 204.15385 * 9 8 6 38 38 H 1.09001 * 110.36402 * 81.82875 * 9 8 6 39 39 H 1.07999 * 119.95828 * 359.97438 * 14 13 11 40 40 H 1.07998 * 119.66079 * 179.69824 * 15 14 13 41 41 H 1.07995 * 119.71230 * 180.02562 * 16 15 14 42 42 H 1.07990 * 120.06051 * 180.02562 * 17 16 15 43 43 H 0.96996 * 119.99687 * 180.02562 * 22 21 19 44 44 H 1.08995 * 109.88145 * 118.13294 * 27 10 9 45 45 H 1.08996 * 109.88299 * 239.29900 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 5.3812 0.4202 -1.3250 7 1 5.8315 0.3373 -0.3358 8 6 5.7326 -0.8167 -2.1934 9 6 7.1335 -0.4317 -2.7307 10 7 7.0588 1.0207 -2.9729 11 6 7.8286 1.7139 -3.8350 12 8 7.6163 2.8962 -4.0245 13 6 8.9282 1.0388 -4.5484 14 6 9.7020 0.0804 -3.8995 15 6 10.7357 -0.5458 -4.5704 16 6 11.0118 -0.2346 -5.8949 17 6 10.2604 0.7035 -6.5647 18 6 9.2025 1.3556 -5.9046 19 6 8.4273 2.3181 -6.5812 20 1 7.3937 2.4687 -6.3070 21 6 8.9998 3.0846 -7.6071 22 7 10.2903 3.0495 -7.8062 23 14 7.9165 4.1555 -8.6884 24 1 7.2093 5.1537 -7.8466 25 1 8.7579 4.8588 -9.6898 26 1 6.9212 3.3047 -9.3890 27 6 6.0097 1.5886 -2.1136 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5682 0.8410 34 1 3.9786 2.1765 0.0890 35 1 5.0203 -0.9360 -3.0098 36 1 5.7820 -1.7202 -1.5856 37 1 7.3420 -0.9610 -3.6603 38 1 7.8991 -0.6533 -1.9871 39 1 9.4977 -0.1705 -2.8692 40 1 11.3347 -1.2847 -4.0589 41 1 11.8229 -0.7337 -6.4042 42 1 10.4821 0.9390 -7.5950 43 1 10.6861 3.5799 -8.5153 44 1 6.4460 2.3113 -1.4243 45 1 5.2488 2.0709 -2.7271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601524919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:46 Heat of formation + Delta-G solvation = -119.896240 kcal Electronic energy + Delta-G solvation = -26631.206479 eV Core-core repulsion = 22805.943095 eV Total energy + Delta-G solvation = -3825.263384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.18211 -39.74701 -38.86049 -38.30730 -37.10769 -35.60949 -32.64881 -31.79277 -31.29164 -30.80120 -29.23377 -27.35982 -27.11719 -25.12348 -23.57344 -22.96473 -22.90321 -21.97268 -20.42602 -19.14088 -18.41324 -18.04670 -17.52374 -17.26910 -17.05948 -16.48213 -16.35236 -16.13607 -15.91675 -15.64208 -15.16871 -14.86376 -14.79148 -14.46642 -14.29908 -13.98518 -13.61095 -13.48742 -13.44358 -13.23958 -12.96532 -12.89107 -12.71316 -12.65728 -12.49909 -12.35504 -12.23840 -11.96709 -11.82567 -11.62806 -11.46372 -11.15824 -10.69245 -10.63017 -10.46948 -9.64292 -9.36012 -9.29046 -8.69000 -6.41008 0.59161 1.01889 1.29626 1.41265 1.48568 2.00923 2.16618 2.18446 2.68698 2.75530 2.86890 3.46692 3.59540 3.68097 3.98234 4.11265 4.17805 4.22159 4.23990 4.30552 4.44226 4.45737 4.51928 4.58627 4.61242 4.62939 4.66554 4.70033 4.81321 4.83030 4.86292 4.87392 4.99416 5.07967 5.14875 5.24238 5.33701 5.49808 5.61246 5.85961 6.02075 6.11041 6.16808 6.28791 6.29877 6.54041 6.68382 6.86157 6.94226 7.47103 8.26131 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.003123 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.961858 B = 8962.844352 C =10310.441985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.059 3.941 4 C 0.053 3.947 5 O -0.385 6.385 6 C 0.091 3.909 7 H 0.110 0.890 8 C -0.119 4.119 9 C 0.102 3.898 10 N -0.624 5.624 11 C 0.583 3.417 12 O -0.587 6.587 13 C -0.272 4.272 14 C -0.054 4.054 15 C -0.235 4.235 16 C -0.091 4.091 17 C -0.182 4.182 18 C 0.113 3.887 19 C -0.463 4.463 20 H 0.056 0.944 21 C 0.035 3.965 22 N -0.818 5.818 23 Si 0.977 3.023 24 H -0.276 1.276 25 H -0.254 1.254 26 H -0.255 1.255 27 C 0.085 3.915 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.291 0.709 44 H 0.065 0.935 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.146 -7.851 15.277 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.017 4.017 4 C -0.023 4.023 5 O -0.304 6.304 6 C 0.033 3.967 7 H 0.128 0.872 8 C -0.157 4.157 9 C -0.020 4.020 10 N -0.359 5.359 11 C 0.377 3.623 12 O -0.468 6.468 13 C -0.276 4.276 14 C -0.073 4.073 15 C -0.254 4.254 16 C -0.110 4.110 17 C -0.201 4.201 18 C 0.110 3.890 19 C -0.492 4.492 20 H 0.074 0.926 21 C -0.181 4.181 22 N -0.444 5.444 23 Si 0.798 3.202 24 H -0.201 1.201 25 H -0.178 1.178 26 H -0.179 1.179 27 C -0.038 4.038 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.141 0.859 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.139 0.861 42 H 0.125 0.875 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.057 -7.303 14.838 20.466 hybrid contribution -0.380 1.378 -0.687 1.586 sum -12.438 -5.925 14.151 19.750 Atomic orbital electron populations 1.22902 0.79729 1.03705 1.00716 1.87907 1.21248 1.28406 1.95581 1.22694 0.92089 0.85110 1.01820 1.22856 0.93853 0.98631 0.86993 1.88010 1.21043 1.81607 1.39726 1.23087 0.81324 0.92995 0.99316 0.87204 1.22903 0.94801 0.98061 0.99945 1.22594 0.98282 0.79379 1.01757 1.48363 1.36329 1.10048 1.41209 1.18325 0.81376 0.85416 0.77161 1.90659 1.72473 1.18229 1.65480 1.19693 1.04245 1.08457 0.95252 1.21088 0.94452 0.93047 0.98695 1.20795 1.02477 1.06539 0.95552 1.21190 0.98028 0.96341 0.95409 1.21349 0.99684 0.98897 1.00181 1.17790 0.91314 0.89957 0.89981 1.19638 0.98251 1.16717 1.14620 0.92556 1.26707 0.96474 0.97724 0.97162 1.69716 1.12097 1.34643 1.27919 0.85344 0.78998 0.78219 0.77668 1.20088 1.17776 1.17937 1.22407 0.90282 0.97739 0.93375 0.92514 0.93988 0.88805 0.89134 0.93175 0.90791 0.90369 0.91214 0.85873 0.90819 0.88772 0.85174 0.84804 0.86122 0.87489 0.89813 0.91659 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.39 10.67 -144.34 -1.54 -9.93 16 3 C 0.06 0.98 6.32 71.98 0.45 1.44 16 4 C 0.05 0.92 6.15 71.98 0.44 1.37 16 5 O -0.39 -9.45 10.04 -144.34 -1.45 -10.90 16 6 C 0.09 2.08 3.44 31.79 0.11 2.19 16 7 H 0.11 1.82 7.82 -2.38 -0.02 1.80 16 8 C -0.12 -2.64 6.81 31.99 0.22 -2.42 16 9 C 0.10 2.81 5.24 86.85 0.46 3.26 16 10 N -0.62 -23.65 3.32 -815.64 -2.71 -26.36 16 11 C 0.58 29.18 7.01 86.67 0.61 29.79 16 12 O -0.59 -34.59 15.44 -4.07 -0.06 -34.65 16 13 C -0.27 -13.77 5.41 -19.70 -0.11 -13.87 16 14 C -0.05 -2.24 8.20 22.51 0.18 -2.06 16 15 C -0.23 -9.23 10.03 22.41 0.22 -9.01 16 16 C -0.09 -4.00 10.01 22.26 0.22 -3.77 16 17 C -0.18 -9.55 8.65 22.72 0.20 -9.35 16 18 C 0.11 6.41 5.56 -21.11 -0.12 6.29 16 19 C -0.46 -27.56 7.73 23.41 0.18 -27.38 16 20 H 0.06 3.52 6.76 -2.91 -0.02 3.50 16 21 C 0.03 1.89 5.27 85.37 0.45 2.34 16 22 N -0.82 -44.65 10.86 21.88 0.24 -44.41 16 23 Si 0.98 42.56 29.57 68.60 2.03 44.59 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 26 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 27 C 0.09 2.74 6.66 86.73 0.58 3.31 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.07 8.11 -2.39 -0.02 1.05 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 2.25 7.33 -2.39 -0.02 2.23 16 38 H 0.09 2.08 6.97 -2.39 -0.02 2.06 16 39 H 0.13 4.33 5.94 -2.91 -0.02 4.31 16 40 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 41 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.11 5.86 6.27 -2.92 -0.02 5.84 16 43 H 0.29 14.28 8.29 -92.71 -0.77 13.52 16 44 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.04 1.67 8.05 -2.39 -0.02 1.65 16 Total: -1.00 -76.50 369.68 2.84 -73.66 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.98 Total: 24.27 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 5.35 Total: -16.27 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -2.47 Total: -70.77 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -3.05 Total: -55.48 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -76.50 2.84 -73.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601524919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.237 kcal (2) G-P(sol) polarization free energy of solvation -76.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds