Wall clock time and date at job start Tue Mar 31 2020 12:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42909 * 113.99718 * 2 1 4 4 H 1.08998 * 109.56886 * 29.85046 * 3 2 1 5 5 C 1.53097 * 109.60066 * 269.72499 * 3 2 1 6 6 O 1.42897 * 109.48844 * 182.58019 * 5 3 2 7 7 C 1.42902 * 114.09920 * 61.11149 * 6 5 3 8 8 C 1.53094 * 109.41598 * 298.84460 * 7 6 5 9 9 C 1.53176 * 109.51885 * 150.00216 * 3 2 1 10 10 H 1.09005 * 109.54340 * 56.93159 * 9 3 2 11 11 C 1.53002 * 109.54434 * 296.75584 * 9 3 2 12 12 N 1.46502 * 109.47155 * 175.17886 * 11 9 3 13 13 C 1.34776 * 120.00070 * 179.97438 * 12 11 9 14 14 O 1.21610 * 119.99998 * 0.02562 * 13 12 11 15 15 C 1.47430 * 120.00029 * 179.97438 * 13 12 11 16 16 C 1.39225 * 120.28394 * 354.03197 * 15 13 12 17 17 C 1.38220 * 120.09520 * 180.02562 * 16 15 13 18 18 C 1.38829 * 120.67352 * 0.02562 * 17 16 15 19 19 C 1.37597 * 120.56909 * 0.02562 * 18 17 16 20 20 C 1.40700 * 119.88592 * 359.97438 * 19 18 17 21 21 C 1.40888 * 120.32926 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99855 * 143.87685 * 21 20 19 23 23 C 1.40275 * 120.00306 * 323.88048 * 21 20 19 24 24 N 1.30629 * 119.99768 * 350.04783 * 23 21 20 25 25 Si 1.86793 * 120.00056 * 170.05372 * 23 21 20 26 26 H 1.48501 * 109.47514 * 89.99936 * 25 23 21 27 27 H 1.48506 * 109.47157 * 209.99535 * 25 23 21 28 28 H 1.48500 * 109.47351 * 329.99911 * 25 23 21 29 29 H 1.08998 * 109.47694 * 59.99556 * 1 2 3 30 30 H 1.08997 * 109.47440 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46903 * 299.99568 * 1 2 3 32 32 H 1.09010 * 109.48082 * 62.55035 * 5 3 2 33 33 H 1.08999 * 109.41573 * 302.56985 * 5 3 2 34 34 H 1.08997 * 109.48330 * 178.86072 * 7 6 5 35 35 H 1.09002 * 109.47879 * 58.82439 * 7 6 5 36 36 H 1.09001 * 109.51790 * 297.70535 * 8 7 6 37 37 H 1.08994 * 109.52368 * 177.51139 * 8 7 6 38 38 H 1.09003 * 109.47518 * 55.17784 * 11 9 3 39 39 H 1.09000 * 109.47181 * 295.17500 * 11 9 3 40 40 H 0.97000 * 119.99968 * 359.97438 * 12 11 9 41 41 H 1.07999 * 119.95073 * 0.04363 * 16 15 13 42 42 H 1.07997 * 119.66232 * 179.97438 * 17 16 15 43 43 H 1.07998 * 119.71371 * 180.27956 * 18 17 16 44 44 H 1.08003 * 120.05626 * 180.02562 * 19 18 17 45 45 H 0.96996 * 120.00076 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 2.0014 0.5112 5 6 2.2254 1.7719 -1.4422 6 8 2.8614 3.0516 -1.4396 7 6 4.1491 3.0618 -0.8201 8 6 4.0111 2.6494 0.6477 9 6 3.3606 1.2646 0.7218 10 1 4.0086 0.5312 0.2417 11 6 3.1465 0.8774 2.1865 12 7 4.4457 0.7263 2.8465 13 6 4.5041 0.3866 4.1495 14 8 3.4785 0.2050 4.7771 15 6 5.8115 0.2340 4.8135 16 6 6.9884 0.3171 4.0744 17 6 8.2120 0.1729 4.7009 18 6 8.2850 -0.0560 6.0682 19 6 7.1392 -0.1440 6.8251 20 6 5.8811 -0.0009 6.2118 21 6 4.7020 -0.0899 6.9777 22 1 3.8550 0.5365 6.7399 23 6 4.6280 -0.9922 8.0493 24 7 5.5685 -1.8826 8.2193 25 14 3.1847 -0.9204 9.2328 26 1 2.0958 -1.8016 8.7398 27 1 3.6225 -1.3788 10.5758 28 1 2.6882 0.4762 9.3239 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.2625 1.8456 -1.9480 33 1 2.8565 1.0534 -1.9651 34 1 4.5722 4.0647 -0.8777 35 1 4.8056 2.3601 -1.3347 36 1 3.3874 3.3733 1.1723 37 1 4.9973 2.6139 1.1104 38 1 2.6014 -0.0652 2.2373 39 1 2.5726 1.6565 2.6881 40 1 5.2638 0.8708 2.3458 41 1 6.9452 0.4946 3.0099 42 1 9.1205 0.2381 4.1206 43 1 9.2494 -0.1617 6.5426 44 1 7.2057 -0.3219 7.8883 45 1 5.5173 -2.5068 8.9601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601607491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:00 Heat of formation + Delta-G solvation = -114.205032 kcal Electronic energy + Delta-G solvation = -27010.352226 eV Core-core repulsion = 23185.335631 eV Total energy + Delta-G solvation = -3825.016595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.18427 -38.79975 -37.48668 -36.83804 -35.14073 -33.70237 -32.36886 -30.67471 -29.98798 -29.56397 -27.18860 -26.81234 -25.33131 -23.38429 -23.16666 -21.80170 -20.80055 -20.45649 -19.34059 -17.54892 -17.12974 -16.70230 -16.41864 -15.74656 -15.58762 -15.48964 -15.20431 -14.73087 -14.54930 -14.21653 -13.94830 -13.71410 -13.40728 -13.26645 -13.08120 -12.68700 -12.53350 -12.43955 -12.11509 -11.85501 -11.59868 -11.53228 -11.16521 -11.09234 -10.99675 -10.92508 -10.69693 -10.60757 -10.50971 -10.29034 -10.07276 -9.67019 -9.41847 -9.23229 -8.42964 -8.30580 -7.58342 -7.32956 -6.77626 -4.36120 2.37407 2.82220 3.11480 3.18785 3.24542 3.28997 3.75479 3.94305 4.00169 4.19304 4.48969 4.52270 4.60302 4.70908 4.78577 4.91922 5.06170 5.09909 5.18979 5.28360 5.36515 5.43363 5.48596 5.52948 5.62073 5.65896 5.75966 5.88253 5.97943 6.04901 6.15722 6.25886 6.31255 6.62701 6.73731 6.94744 7.05487 7.10207 7.17050 7.25477 7.46238 7.62192 7.87986 7.99175 8.18278 8.40529 8.68103 8.83087 8.91540 9.43813 10.19126 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014691 B = 0.003474 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.523909 B = 8057.215635 C = 9508.852563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.064 3.936 4 H 0.073 0.927 5 C 0.043 3.957 6 O -0.378 6.378 7 C 0.057 3.943 8 C -0.150 4.150 9 C -0.098 4.098 10 H 0.086 0.914 11 C 0.135 3.865 12 N -0.748 5.748 13 C 0.564 3.436 14 O -0.537 6.537 15 C -0.259 4.259 16 C -0.058 4.058 17 C -0.245 4.245 18 C -0.095 4.095 19 C -0.147 4.147 20 C 0.148 3.852 21 C -0.418 4.418 22 H 0.102 0.898 23 C 0.071 3.929 24 N -0.795 5.795 25 Si 0.916 3.084 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.260 1.260 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.390 0.610 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.114 0.886 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.439 6.122 -15.204 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.005 3.995 4 H 0.091 0.909 5 C -0.034 4.034 6 O -0.297 6.297 7 C -0.019 4.019 8 C -0.188 4.188 9 C -0.117 4.117 10 H 0.104 0.896 11 C 0.011 3.989 12 N -0.403 5.403 13 C 0.358 3.642 14 O -0.415 6.415 15 C -0.264 4.264 16 C -0.076 4.076 17 C -0.264 4.264 18 C -0.114 4.114 19 C -0.166 4.166 20 C 0.144 3.856 21 C -0.446 4.446 22 H 0.120 0.880 23 C -0.147 4.147 24 N -0.420 5.420 25 Si 0.741 3.259 26 H -0.193 1.193 27 H -0.203 1.203 28 H -0.184 1.184 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.224 0.776 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.132 0.868 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.123 5.782 -14.656 16.568 hybrid contribution -0.186 -0.223 0.328 0.439 sum -5.309 5.559 -14.328 16.260 Atomic orbital electron populations 1.22842 0.80833 1.03035 1.00046 1.87954 1.19849 1.26646 1.94918 1.22713 0.95160 0.85504 0.96092 0.90916 1.23016 0.98540 0.85724 0.96142 1.87944 1.32477 1.30074 1.79219 1.22682 0.84716 1.02459 0.92074 1.22307 1.02595 0.96338 0.97535 1.21534 0.95837 0.97853 0.96497 0.89614 1.21061 0.86761 1.01543 0.89549 1.46010 1.07618 1.74820 1.11879 1.18406 0.90076 0.75693 0.80037 1.90683 1.36483 1.50422 1.63906 1.19493 0.90431 1.22140 0.94371 1.20638 0.92734 0.97779 0.96495 1.20279 0.95713 1.15442 0.95011 1.20792 0.97095 0.99520 0.94007 1.21307 0.91517 1.04451 0.99368 1.17465 0.93220 0.85744 0.89154 1.20073 1.00122 1.16820 1.07588 0.87976 1.26079 0.97372 0.94254 0.97038 1.69712 1.32036 1.12954 1.27296 0.86172 0.81208 0.80021 0.78515 1.19345 1.20329 1.18361 0.94159 0.89396 0.93600 0.88856 0.92209 0.88416 0.92812 0.90430 0.89687 0.91275 0.92437 0.77570 0.89347 0.89107 0.89081 0.86794 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.45 9.75 -35.23 -0.34 -4.79 16 3 C 0.06 0.69 2.21 -26.59 -0.06 0.63 16 4 H 0.07 0.78 7.79 -51.93 -0.40 0.37 16 5 C 0.04 0.41 6.47 37.21 0.24 0.65 16 6 O -0.38 -4.01 10.77 -35.23 -0.38 -4.39 16 7 C 0.06 0.51 6.84 37.21 0.25 0.76 16 8 C -0.15 -1.50 5.26 -26.59 -0.14 -1.64 16 9 C -0.10 -1.14 2.03 -90.44 -0.18 -1.32 16 10 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 11 C 0.14 2.09 5.01 -4.04 -0.02 2.07 16 12 N -0.75 -13.23 5.26 -61.38 -0.32 -13.56 16 13 C 0.56 13.16 7.72 -12.52 -0.10 13.06 16 14 O -0.54 -14.35 13.64 5.27 0.07 -14.28 16 15 C -0.26 -6.35 5.92 -104.37 -0.62 -6.97 16 16 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 17 C -0.25 -5.18 10.03 -39.37 -0.39 -5.57 16 18 C -0.10 -2.14 10.01 -39.60 -0.40 -2.54 16 19 C -0.15 -3.74 8.62 -38.89 -0.34 -4.08 16 20 C 0.15 4.00 5.47 -106.54 -0.58 3.41 16 21 C -0.42 -11.59 7.59 -37.81 -0.29 -11.87 16 22 H 0.10 2.93 6.05 -52.49 -0.32 2.62 16 23 C 0.07 1.84 5.23 -17.30 -0.09 1.75 16 24 N -0.79 -20.89 11.33 55.56 0.63 -20.26 16 25 Si 0.92 19.91 29.57 -169.99 -5.03 14.88 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 28 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 29 H 0.04 0.29 7.96 -51.93 -0.41 -0.13 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.41 8.09 -51.92 -0.42 -0.01 16 32 H 0.09 0.77 7.97 -51.92 -0.41 0.35 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.83 7.29 -51.93 -0.38 0.45 16 38 H 0.07 1.21 7.65 -51.93 -0.40 0.81 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.39 5.89 5.76 -40.82 -0.23 5.65 16 41 H 0.09 1.53 6.44 -52.49 -0.34 1.19 16 42 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 44 H 0.11 2.95 6.78 -52.48 -0.36 2.60 16 45 H 0.28 6.73 8.29 -40.82 -0.34 6.39 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -31.23 363.56 -8.49 -39.72 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.61 Total: 9.08 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -1.99 Total: -11.89 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.31 Total: -33.81 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.65 Total: -23.46 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.23 -8.49 -39.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601607491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.483 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds