Wall clock time and date at job start Tue Mar 31 2020 12:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42909 * 113.99718 * 2 1 4 4 H 1.08998 * 109.56886 * 29.85046 * 3 2 1 5 5 C 1.53097 * 109.60066 * 269.72499 * 3 2 1 6 6 O 1.42897 * 109.48844 * 182.58019 * 5 3 2 7 7 C 1.42902 * 114.09920 * 61.11149 * 6 5 3 8 8 C 1.53094 * 109.41598 * 298.84460 * 7 6 5 9 9 C 1.53176 * 109.51885 * 150.00216 * 3 2 1 10 10 H 1.09005 * 109.54340 * 56.93159 * 9 3 2 11 11 C 1.53002 * 109.54434 * 296.75584 * 9 3 2 12 12 N 1.46502 * 109.47155 * 175.17886 * 11 9 3 13 13 C 1.34776 * 120.00070 * 179.97438 * 12 11 9 14 14 O 1.21610 * 119.99998 * 0.02562 * 13 12 11 15 15 C 1.47430 * 120.00029 * 179.97438 * 13 12 11 16 16 C 1.39225 * 120.28394 * 354.03197 * 15 13 12 17 17 C 1.38220 * 120.09520 * 180.02562 * 16 15 13 18 18 C 1.38829 * 120.67352 * 0.02562 * 17 16 15 19 19 C 1.37597 * 120.56909 * 0.02562 * 18 17 16 20 20 C 1.40700 * 119.88592 * 359.97438 * 19 18 17 21 21 C 1.40888 * 120.32926 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99855 * 143.87685 * 21 20 19 23 23 C 1.40275 * 120.00306 * 323.88048 * 21 20 19 24 24 N 1.30629 * 119.99768 * 350.04783 * 23 21 20 25 25 Si 1.86793 * 120.00056 * 170.05372 * 23 21 20 26 26 H 1.48501 * 109.47514 * 89.99936 * 25 23 21 27 27 H 1.48506 * 109.47157 * 209.99535 * 25 23 21 28 28 H 1.48500 * 109.47351 * 329.99911 * 25 23 21 29 29 H 1.08998 * 109.47694 * 59.99556 * 1 2 3 30 30 H 1.08997 * 109.47440 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46903 * 299.99568 * 1 2 3 32 32 H 1.09010 * 109.48082 * 62.55035 * 5 3 2 33 33 H 1.08999 * 109.41573 * 302.56985 * 5 3 2 34 34 H 1.08997 * 109.48330 * 178.86072 * 7 6 5 35 35 H 1.09002 * 109.47879 * 58.82439 * 7 6 5 36 36 H 1.09001 * 109.51790 * 297.70535 * 8 7 6 37 37 H 1.08994 * 109.52368 * 177.51139 * 8 7 6 38 38 H 1.09003 * 109.47518 * 55.17784 * 11 9 3 39 39 H 1.09000 * 109.47181 * 295.17500 * 11 9 3 40 40 H 0.97000 * 119.99968 * 359.97438 * 12 11 9 41 41 H 1.07999 * 119.95073 * 0.04363 * 16 15 13 42 42 H 1.07997 * 119.66232 * 179.97438 * 17 16 15 43 43 H 1.07998 * 119.71371 * 180.27956 * 18 17 16 44 44 H 1.08003 * 120.05626 * 180.02562 * 19 18 17 45 45 H 0.96996 * 120.00076 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 2.0014 0.5112 5 6 2.2254 1.7719 -1.4422 6 8 2.8614 3.0516 -1.4396 7 6 4.1491 3.0618 -0.8201 8 6 4.0111 2.6494 0.6477 9 6 3.3606 1.2646 0.7218 10 1 4.0086 0.5312 0.2417 11 6 3.1465 0.8774 2.1865 12 7 4.4457 0.7263 2.8465 13 6 4.5041 0.3866 4.1495 14 8 3.4785 0.2050 4.7771 15 6 5.8115 0.2340 4.8135 16 6 6.9884 0.3171 4.0744 17 6 8.2120 0.1729 4.7009 18 6 8.2850 -0.0560 6.0682 19 6 7.1392 -0.1440 6.8251 20 6 5.8811 -0.0009 6.2118 21 6 4.7020 -0.0899 6.9777 22 1 3.8550 0.5365 6.7399 23 6 4.6280 -0.9922 8.0493 24 7 5.5685 -1.8826 8.2193 25 14 3.1847 -0.9204 9.2328 26 1 2.0958 -1.8016 8.7398 27 1 3.6225 -1.3788 10.5758 28 1 2.6882 0.4762 9.3239 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.2625 1.8456 -1.9480 33 1 2.8565 1.0534 -1.9651 34 1 4.5722 4.0647 -0.8777 35 1 4.8056 2.3601 -1.3347 36 1 3.3874 3.3733 1.1723 37 1 4.9973 2.6139 1.1104 38 1 2.6014 -0.0652 2.2373 39 1 2.5726 1.6565 2.6881 40 1 5.2638 0.8708 2.3458 41 1 6.9452 0.4946 3.0099 42 1 9.1205 0.2381 4.1206 43 1 9.2494 -0.1617 6.5426 44 1 7.2057 -0.3219 7.8883 45 1 5.5173 -2.5068 8.9601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601607491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:59 Heat of formation + Delta-G solvation = -134.932933 kcal Electronic energy + Delta-G solvation = -27011.251056 eV Core-core repulsion = 23185.335631 eV Total energy + Delta-G solvation = -3825.915424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.17493 -40.43494 -38.60004 -38.28579 -36.51684 -35.54176 -33.73934 -31.82050 -31.45967 -31.28760 -28.44202 -27.54773 -27.15263 -24.51069 -24.16448 -23.35622 -22.54938 -21.48052 -20.96073 -19.38798 -18.23407 -17.81653 -17.48535 -17.13680 -16.85516 -16.64397 -16.38425 -15.97994 -15.84154 -15.82960 -15.31452 -14.98838 -14.93764 -14.49067 -14.37179 -14.17256 -13.84246 -13.67693 -13.41342 -13.38179 -12.87818 -12.87089 -12.67843 -12.51433 -12.31851 -12.29826 -12.10783 -11.91315 -11.79037 -11.50241 -11.42766 -11.13708 -11.04379 -10.35911 -10.18552 -9.95453 -9.38956 -9.20778 -8.67449 -6.35519 0.52297 1.01614 1.32201 1.45373 1.48598 2.20756 2.35759 2.41647 2.53860 2.79356 3.07692 3.53466 3.65119 3.70566 3.75708 3.98397 4.10750 4.25901 4.30425 4.36541 4.38449 4.43963 4.48371 4.54548 4.60514 4.69644 4.71990 4.78099 4.82396 4.84593 4.88843 5.02549 5.05321 5.09709 5.20930 5.24455 5.34501 5.61461 5.65425 5.82411 5.99068 6.05070 6.10660 6.29560 6.34845 6.64084 6.80720 6.91914 7.01456 7.66542 8.31532 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014691 B = 0.003474 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.523909 B = 8057.215635 C = 9508.852563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.064 3.936 4 H 0.069 0.931 5 C 0.048 3.952 6 O -0.391 6.391 7 C 0.058 3.942 8 C -0.147 4.147 9 C -0.089 4.089 10 H 0.092 0.908 11 C 0.139 3.861 12 N -0.724 5.724 13 C 0.558 3.442 14 O -0.581 6.581 15 C -0.278 4.278 16 C -0.054 4.054 17 C -0.233 4.233 18 C -0.091 4.091 19 C -0.176 4.176 20 C 0.117 3.883 21 C -0.460 4.460 22 H 0.077 0.923 23 C 0.033 3.967 24 N -0.826 5.826 25 Si 0.977 3.023 26 H -0.272 1.272 27 H -0.256 1.256 28 H -0.263 1.263 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.406 0.594 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.121 0.879 44 H 0.096 0.904 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 6.809 -17.758 19.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.005 3.995 4 H 0.087 0.913 5 C -0.029 4.029 6 O -0.310 6.310 7 C -0.019 4.019 8 C -0.184 4.184 9 C -0.108 4.108 10 H 0.110 0.890 11 C 0.015 3.985 12 N -0.379 5.379 13 C 0.351 3.649 14 O -0.462 6.462 15 C -0.283 4.283 16 C -0.072 4.072 17 C -0.252 4.252 18 C -0.110 4.110 19 C -0.196 4.196 20 C 0.114 3.886 21 C -0.489 4.489 22 H 0.095 0.905 23 C -0.182 4.182 24 N -0.453 5.453 25 Si 0.798 3.202 26 H -0.198 1.198 27 H -0.180 1.180 28 H -0.187 1.187 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.243 0.757 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.139 0.861 44 H 0.114 0.886 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.709 6.487 -17.260 18.808 hybrid contribution -0.505 -0.394 0.930 1.129 sum -4.214 6.093 -16.330 17.932 Atomic orbital electron populations 1.23001 0.79548 1.03866 1.00884 1.87915 1.21387 1.27277 1.95108 1.22739 0.94443 0.85218 0.97064 0.91267 1.23017 0.99424 0.85502 0.94962 1.87938 1.33261 1.30549 1.79288 1.22799 0.84383 1.03861 0.90818 1.22298 1.02483 0.94855 0.98810 1.21485 0.96955 0.99046 0.93297 0.88974 1.21101 0.85241 1.00128 0.92025 1.45728 1.09342 1.72720 1.10116 1.18487 0.89292 0.75580 0.81548 1.90660 1.37706 1.52457 1.65397 1.19868 0.92350 1.21953 0.94165 1.21073 0.91505 0.96059 0.98578 1.20823 0.97329 1.12489 0.94582 1.21190 0.97296 0.97582 0.94917 1.21250 0.92319 1.06968 0.99053 1.17843 0.93658 0.86526 0.90615 1.20025 1.00163 1.18667 1.10051 0.90456 1.26739 0.99867 0.93503 0.98063 1.69734 1.33585 1.13673 1.28268 0.85291 0.77948 0.79548 0.77378 1.19777 1.17955 1.18720 0.91982 0.88677 0.94084 0.87465 0.91637 0.86754 0.91440 0.91261 0.88998 0.93536 0.93510 0.75656 0.84837 0.84714 0.86129 0.88582 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.62 16 2 O -0.40 -9.10 9.75 -148.98 -1.45 -10.56 16 3 C 0.06 1.30 2.21 30.69 0.07 1.37 16 4 H 0.07 1.43 7.79 -2.39 -0.02 1.41 16 5 C 0.05 0.80 6.47 72.01 0.47 1.27 16 6 O -0.39 -7.24 10.77 -148.98 -1.60 -8.84 16 7 C 0.06 0.84 6.84 72.01 0.49 1.34 16 8 C -0.15 -2.61 5.26 30.68 0.16 -2.45 16 9 C -0.09 -1.93 2.03 -10.68 -0.02 -1.95 16 10 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 11 C 0.14 4.31 5.01 86.38 0.43 4.74 16 12 N -0.72 -25.07 5.26 -466.35 -2.46 -27.53 16 13 C 0.56 26.52 7.72 86.66 0.67 27.19 16 14 O -0.58 -32.66 13.64 -4.06 -0.06 -32.71 16 15 C -0.28 -13.68 5.92 -19.70 -0.12 -13.80 16 16 C -0.05 -2.11 9.52 22.50 0.21 -1.90 16 17 C -0.23 -8.93 10.03 22.41 0.22 -8.71 16 18 C -0.09 -3.93 10.01 22.26 0.22 -3.71 16 19 C -0.18 -9.16 8.62 22.72 0.20 -8.96 16 20 C 0.12 6.54 5.47 -21.11 -0.12 6.43 16 21 C -0.46 -27.05 7.59 23.41 0.18 -26.87 16 22 H 0.08 4.79 6.05 -2.91 -0.02 4.77 16 23 C 0.03 1.78 5.23 85.37 0.45 2.23 16 24 N -0.83 -45.19 11.33 21.88 0.25 -44.94 16 25 Si 0.98 42.70 29.57 68.60 2.03 44.73 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 27 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 28 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 29 H 0.06 0.77 7.96 -2.39 -0.02 0.75 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 0.72 8.09 -2.38 -0.02 0.70 16 32 H 0.11 1.48 7.97 -2.38 -0.02 1.46 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.50 7.29 -2.39 -0.02 1.48 16 38 H 0.05 1.67 7.65 -2.39 -0.02 1.65 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.41 11.19 5.76 -92.71 -0.53 10.66 16 41 H 0.13 3.97 6.44 -2.91 -0.02 3.95 16 42 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 43 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 44 H 0.10 5.21 6.78 -2.91 -0.02 5.19 16 45 H 0.29 14.26 8.29 -92.71 -0.77 13.49 16 Total: -1.00 -72.06 363.56 1.92 -70.14 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.47 Total: 31.88 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 4.74 Total: -22.16 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -2.21 Total: -72.47 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -3.11 Total: -52.11 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -72.06 1.92 -70.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601607491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.792 kcal (2) G-P(sol) polarization free energy of solvation -72.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds