Wall clock time and date at job start Tue Mar 31 2020 12:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99943 * 2 1 4 4 H 1.09000 * 109.52135 * 330.13014 * 3 2 1 5 5 C 1.53093 * 109.57039 * 90.28001 * 3 2 1 6 6 O 1.42904 * 109.41299 * 62.33506 * 5 3 2 7 7 C 1.42899 * 114.10207 * 61.15125 * 6 5 3 8 8 C 1.53093 * 109.41839 * 298.84636 * 7 6 5 9 9 C 1.53175 * 109.52533 * 210.00000 * 3 2 1 10 10 H 1.08995 * 109.54469 * 177.05555 * 9 3 2 11 11 C 1.52999 * 109.54033 * 56.87856 * 9 3 2 12 12 N 1.46503 * 109.46966 * 175.00035 * 11 9 3 13 13 C 1.34776 * 120.00164 * 180.02562 * 12 11 9 14 14 O 1.21607 * 119.99624 * 0.02562 * 13 12 11 15 15 C 1.47432 * 120.00197 * 179.72188 * 13 12 11 16 16 C 1.39224 * 120.27985 * 354.44819 * 15 13 12 17 17 C 1.38227 * 120.08976 * 179.72126 * 16 15 13 18 18 C 1.38822 * 120.67737 * 0.54838 * 17 16 15 19 19 C 1.37605 * 120.56625 * 359.72537 * 18 17 16 20 20 C 1.40701 * 119.88373 * 359.97438 * 19 18 17 21 21 C 1.40892 * 120.32655 * 179.97438 * 20 19 18 22 22 H 1.07996 * 119.99777 * 145.84677 * 21 20 19 23 23 C 1.40271 * 120.00129 * 325.84438 * 21 20 19 24 24 N 1.30622 * 120.00084 * 350.77028 * 23 21 20 25 25 Si 1.86802 * 119.99897 * 170.76677 * 23 21 20 26 26 H 1.48493 * 109.47150 * 90.00362 * 25 23 21 27 27 H 1.48505 * 109.47064 * 210.00101 * 25 23 21 28 28 H 1.48499 * 109.47263 * 329.99943 * 25 23 21 29 29 H 1.08996 * 109.46874 * 299.99481 * 1 2 3 30 30 H 1.09001 * 109.47082 * 59.99974 * 1 2 3 31 31 H 1.08996 * 109.46621 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47775 * 182.30863 * 5 3 2 33 33 H 1.09000 * 109.48520 * 302.33935 * 5 3 2 34 34 H 1.09009 * 109.47901 * 58.82621 * 7 6 5 35 35 H 1.08997 * 109.48488 * 178.84684 * 7 6 5 36 36 H 1.09001 * 109.51701 * 297.70184 * 8 7 6 37 37 H 1.08994 * 109.52743 * 177.51414 * 8 7 6 38 38 H 1.08998 * 109.47199 * 55.00079 * 11 9 3 39 39 H 1.08994 * 109.47450 * 294.99955 * 11 9 3 40 40 H 0.97000 * 119.99883 * 0.02562 * 12 11 9 41 41 H 1.08001 * 119.95697 * 359.96418 * 16 15 13 42 42 H 1.07996 * 119.65822 * 180.25453 * 17 16 15 43 43 H 1.07998 * 119.72011 * 179.74550 * 18 17 16 44 44 H 1.08004 * 120.05513 * 180.02562 * 19 18 17 45 45 H 0.97002 * 120.00130 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3446 2.0006 -0.5116 5 6 2.2253 1.7711 1.4425 6 8 3.1436 0.8910 2.0938 7 6 4.4383 0.8480 1.4905 8 6 4.3122 0.3453 0.0500 9 6 3.3607 1.2647 -0.7218 10 1 3.7800 2.2697 -0.7679 11 6 3.1665 0.7255 -2.1405 12 7 4.4357 0.7987 -2.8686 13 6 4.5048 0.3759 -4.1465 14 8 3.5136 -0.0658 -4.6952 15 6 5.7806 0.4552 -4.8812 16 6 6.8872 1.0703 -4.3020 17 6 8.0830 1.1374 -4.9921 18 6 8.1943 0.6057 -6.2696 19 6 7.1165 -0.0034 -6.8704 20 6 5.8897 -0.0904 -6.1870 21 6 4.7800 -0.7115 -6.7936 22 1 4.0759 -1.2664 -6.1914 23 6 4.5897 -0.6090 -8.1795 24 7 5.3312 0.2049 -8.8822 25 14 3.2758 -1.6368 -9.0203 26 1 1.9957 -0.8843 -9.0395 27 1 3.6960 -1.9342 -10.4133 28 1 3.0912 -2.9089 -8.2767 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 2.6305 2.7830 1.4412 33 1 1.2734 1.7613 1.9734 34 1 4.8724 1.8479 1.4899 35 1 5.0808 0.1732 2.0562 36 1 3.9159 -0.6701 0.0520 37 1 5.2927 0.3536 -0.4259 38 1 2.4162 1.3240 -2.6571 39 1 2.8343 -0.3115 -2.0928 40 1 5.2263 1.1514 -2.4310 41 1 6.8123 1.4922 -3.3106 42 1 8.9381 1.6125 -4.5345 43 1 9.1349 0.6703 -6.7964 44 1 7.2124 -0.4146 -7.8645 45 1 5.1998 0.2755 -9.8407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601607503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:13 Heat of formation + Delta-G solvation = -132.499075 kcal Electronic energy + Delta-G solvation = -27110.699937 eV Core-core repulsion = 23284.890053 eV Total energy + Delta-G solvation = -3825.809884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.16426 -40.43373 -38.59097 -37.93042 -36.48638 -35.55399 -33.68534 -31.81323 -31.49596 -31.28354 -28.41116 -27.48297 -27.14851 -24.49609 -24.35314 -23.32225 -22.52693 -21.29350 -20.82236 -19.39070 -18.17368 -17.61731 -17.32214 -17.18866 -16.97321 -16.49052 -16.39936 -15.95716 -15.89222 -15.75328 -15.32226 -14.93328 -14.88841 -14.49720 -14.48543 -14.15181 -13.81873 -13.46351 -13.38693 -13.16629 -12.98581 -12.86818 -12.73356 -12.50312 -12.30089 -12.25553 -12.02552 -11.89485 -11.68206 -11.47150 -11.35188 -11.14612 -11.00100 -10.30560 -10.06063 -9.93221 -9.38019 -9.21950 -8.67555 -6.35935 0.53093 1.02053 1.32091 1.45361 1.48961 2.20399 2.36645 2.44087 2.74597 2.79347 3.08937 3.64465 3.68372 3.73349 3.79524 3.93270 4.29868 4.30923 4.32399 4.39132 4.42379 4.48914 4.50562 4.57807 4.59899 4.66175 4.74945 4.77221 4.85804 4.88917 4.90415 5.04313 5.09145 5.11930 5.25082 5.34789 5.35183 5.62722 5.67112 5.83479 6.06449 6.11580 6.14027 6.35471 6.40624 6.65460 6.80844 6.93022 7.02342 7.68018 8.30075 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015398 B = 0.003482 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.015109 B = 8038.863923 C = 9599.226718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.057 3.943 4 H 0.085 0.915 5 C 0.043 3.957 6 O -0.395 6.395 7 C 0.062 3.938 8 C -0.145 4.145 9 C -0.089 4.089 10 H 0.112 0.888 11 C 0.141 3.859 12 N -0.725 5.725 13 C 0.558 3.442 14 O -0.582 6.582 15 C -0.281 4.281 16 C -0.053 4.053 17 C -0.235 4.235 18 C -0.092 4.092 19 C -0.178 4.178 20 C 0.115 3.885 21 C -0.459 4.459 22 H 0.079 0.921 23 C 0.033 3.967 24 N -0.823 5.823 25 Si 0.977 3.023 26 H -0.271 1.271 27 H -0.255 1.255 28 H -0.265 1.265 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.406 0.594 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.120 0.880 44 H 0.099 0.901 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.069 5.624 18.132 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.001 4.001 4 H 0.103 0.897 5 C -0.034 4.034 6 O -0.314 6.314 7 C -0.014 4.014 8 C -0.182 4.182 9 C -0.107 4.107 10 H 0.130 0.870 11 C 0.017 3.983 12 N -0.380 5.380 13 C 0.351 3.649 14 O -0.463 6.463 15 C -0.285 4.285 16 C -0.071 4.071 17 C -0.254 4.254 18 C -0.111 4.111 19 C -0.198 4.198 20 C 0.111 3.889 21 C -0.488 4.488 22 H 0.097 0.903 23 C -0.182 4.182 24 N -0.450 5.450 25 Si 0.799 3.201 26 H -0.196 1.196 27 H -0.179 1.179 28 H -0.189 1.189 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.243 0.757 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.138 0.862 44 H 0.117 0.883 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.690 5.124 17.685 18.778 hybrid contribution -0.544 -0.089 -1.028 1.167 sum -4.234 5.035 16.656 17.908 Atomic orbital electron populations 1.22929 0.80143 1.03416 1.00621 1.87973 1.20743 1.27712 1.95090 1.22887 0.94489 0.85840 0.96929 0.89712 1.23172 0.94686 0.93613 0.91890 1.87923 1.23119 1.66319 1.54074 1.22701 0.84464 1.01928 0.92348 1.22149 0.99838 0.99554 0.96693 1.21542 0.95834 1.01275 0.92082 0.86976 1.21068 0.85642 1.00323 0.91264 1.45744 1.13154 1.66771 1.12286 1.18487 0.88459 0.76510 0.81463 1.90653 1.39099 1.47969 1.68622 1.19850 0.94501 1.14598 0.99601 1.21068 0.91893 0.95611 0.98551 1.20816 0.98377 1.09970 0.96265 1.21190 0.97564 0.96691 0.95614 1.21296 0.92715 1.05433 1.00320 1.17855 0.92902 0.87536 0.90587 1.20115 1.08077 1.27915 0.92724 0.90307 1.26758 0.98807 0.94995 0.97649 1.69735 1.36502 1.29695 1.09046 0.85284 0.78033 0.78996 0.77815 1.19617 1.17892 1.18922 0.92358 0.93859 0.89499 0.89943 0.87804 0.91018 0.88004 0.92620 0.89956 0.93511 0.93810 0.75650 0.84779 0.84772 0.86220 0.88297 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.82 113.37 1.23 1.68 16 2 O -0.40 -9.56 9.08 -141.94 -1.29 -10.85 16 3 C 0.06 1.09 2.43 30.68 0.07 1.16 16 4 H 0.09 1.37 7.79 -2.39 -0.02 1.35 16 5 C 0.04 0.67 6.49 72.01 0.47 1.14 16 6 O -0.40 -8.11 10.70 -141.94 -1.52 -9.63 16 7 C 0.06 1.03 6.84 72.01 0.49 1.52 16 8 C -0.14 -2.95 5.10 30.68 0.16 -2.79 16 9 C -0.09 -1.83 2.14 -10.68 -0.02 -1.86 16 10 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 11 C 0.14 4.31 4.81 86.38 0.42 4.73 16 12 N -0.72 -24.87 5.27 -466.37 -2.46 -27.32 16 13 C 0.56 26.46 7.72 86.67 0.67 27.13 16 14 O -0.58 -32.70 13.59 -4.05 -0.06 -32.76 16 15 C -0.28 -13.78 5.92 -19.70 -0.12 -13.90 16 16 C -0.05 -2.07 9.52 22.50 0.21 -1.86 16 17 C -0.24 -9.03 10.03 22.41 0.22 -8.81 16 18 C -0.09 -3.98 10.01 22.26 0.22 -3.76 16 19 C -0.18 -9.28 8.62 22.72 0.20 -9.09 16 20 C 0.11 6.43 5.51 -21.11 -0.12 6.31 16 21 C -0.46 -27.07 7.68 23.41 0.18 -26.89 16 22 H 0.08 4.92 5.92 -2.91 -0.02 4.90 16 23 C 0.03 1.77 5.25 85.37 0.45 2.22 16 24 N -0.82 -44.71 11.14 21.88 0.24 -44.46 16 25 Si 0.98 42.65 29.57 68.60 2.03 44.68 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 29 H 0.06 0.79 7.86 -2.39 -0.02 0.77 16 30 H 0.04 0.75 8.09 -2.39 -0.02 0.73 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 1.37 7.86 -2.39 -0.02 1.35 16 34 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.45 7.83 -2.39 -0.02 1.44 16 37 H 0.08 1.54 7.31 -2.39 -0.02 1.52 16 38 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.04 1.59 7.78 -2.39 -0.02 1.57 16 40 H 0.41 11.03 5.77 -92.71 -0.53 10.50 16 41 H 0.13 3.95 6.44 -2.91 -0.02 3.93 16 42 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 43 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 44 H 0.10 5.39 6.60 -2.91 -0.02 5.37 16 45 H 0.29 14.14 8.29 -92.71 -0.77 13.38 16 Total: -1.00 -73.71 362.06 2.16 -71.55 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.47 Total: 31.86 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 4.73 Total: -23.07 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -2.21 Total: -71.79 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -2.86 Total: -53.23 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -73.71 2.16 -71.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601607503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.946 kcal (2) G-P(sol) polarization free energy of solvation -73.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds