Wall clock time and date at job start Tue Mar 31 2020 12:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00132 * 2 1 4 4 C 1.52994 * 109.46924 * 184.91534 * 3 2 1 5 5 N 1.46506 * 109.47429 * 58.92822 * 4 3 2 6 6 C 1.46495 * 120.00093 * 90.03064 * 5 4 3 7 7 C 1.50699 * 109.47055 * 91.91289 * 6 5 4 8 8 H 1.08007 * 119.99630 * 354.30179 * 7 6 5 9 9 C 1.37877 * 120.00069 * 174.02171 * 7 6 5 10 10 N 1.31513 * 119.99972 * 355.12444 * 9 7 6 11 11 Si 1.86803 * 119.99789 * 175.12926 * 9 7 6 12 12 H 1.48500 * 109.47139 * 4.99746 * 11 9 7 13 13 H 1.48494 * 109.47326 * 125.00242 * 11 9 7 14 14 H 1.48502 * 109.46968 * 245.00208 * 11 9 7 15 15 C 1.34777 * 119.99785 * 270.03977 * 5 4 3 16 16 O 1.21278 * 120.00191 * 5.38928 * 15 5 4 17 17 C 1.50695 * 120.00009 * 185.39536 * 15 5 4 18 18 H 1.09001 * 109.33521 * 345.29070 * 17 15 5 19 19 O 1.42719 * 109.34144 * 225.77296 * 17 15 5 20 20 C 1.43202 * 113.14700 * 187.99413 * 19 17 15 21 21 C 1.52972 * 108.48103 * 70.65995 * 20 19 17 22 22 C 1.50742 * 109.76273 * 310.77960 * 21 20 19 23 23 C 1.38594 * 118.76603 * 196.78436 * 22 21 20 24 24 C 1.38062 * 120.27963 * 180.47327 * 23 22 21 25 25 C 1.38265 * 119.85794 * 359.97438 * 24 23 22 26 26 C 1.38048 * 119.89945 * 359.91230 * 25 24 23 27 27 C 1.37901 * 121.34788 * 17.07788 * 22 21 20 28 28 H 1.09003 * 109.47166 * 304.93781 * 1 2 3 29 29 H 1.09004 * 109.46907 * 64.93108 * 1 2 3 30 30 H 1.08992 * 109.47232 * 184.93144 * 1 2 3 31 31 H 1.08994 * 109.47216 * 64.91744 * 3 2 1 32 32 H 1.09000 * 109.47080 * 304.91229 * 3 2 1 33 33 H 1.09004 * 109.47303 * 298.93059 * 4 3 2 34 34 H 1.09003 * 109.47351 * 178.92798 * 4 3 2 35 35 H 1.09000 * 109.47161 * 331.91907 * 6 5 4 36 36 H 1.08995 * 109.47509 * 211.91592 * 6 5 4 37 37 H 0.97004 * 119.99670 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.63862 * 310.96489 * 20 19 17 39 39 H 1.09000 * 109.63854 * 190.36033 * 20 19 17 40 40 H 1.08999 * 109.42332 * 190.68251 * 21 20 19 41 41 H 1.09007 * 109.37095 * 70.83862 * 21 20 19 42 42 H 1.08000 * 119.86109 * 0.47393 * 23 22 21 43 43 H 1.08000 * 120.06995 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.04757 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.85188 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5306 1.1867 -0.1236 5 7 3.8662 0.4797 -1.3621 6 6 4.0705 1.2319 -2.6026 7 6 5.5310 1.5740 -2.7478 8 1 6.2214 1.3440 -1.9497 9 6 5.9867 2.1754 -3.9018 10 7 5.1672 2.3634 -4.9131 11 14 7.7681 2.7231 -4.0288 12 1 8.5061 2.2925 -2.8142 13 1 8.3902 2.1096 -5.2295 14 1 7.8241 4.2026 -4.1434 15 6 3.9869 -0.8626 -1.3603 16 8 3.7226 -1.4939 -0.3590 17 6 4.4502 -1.5792 -2.6024 18 1 4.3873 -0.9022 -3.4543 19 8 3.6105 -2.7090 -2.8373 20 6 4.0849 -3.5534 -3.8921 21 6 5.3447 -4.2732 -3.4076 22 6 6.2999 -3.2768 -2.8018 23 6 7.6242 -3.6453 -2.6242 24 6 8.5237 -2.7607 -2.0633 25 6 8.1017 -1.5018 -1.6776 26 6 6.7834 -1.1332 -1.8562 27 6 5.8793 -2.0202 -2.4202 28 1 -0.3634 0.5885 0.8425 29 1 -0.3633 0.4355 -0.9309 30 1 -0.3633 -1.0238 0.0883 31 1 1.7601 1.8145 0.9307 32 1 1.6208 1.8766 -0.8427 33 1 3.9223 0.6318 0.7290 34 1 3.9726 2.1829 -0.1428 35 1 3.4837 2.1499 -2.5717 36 1 3.7531 0.6261 -3.4513 37 1 5.4878 2.7869 -5.7248 38 1 4.3226 -2.9482 -4.7670 39 1 3.3194 -4.2862 -4.1471 40 1 5.8252 -4.7700 -4.2504 41 1 5.0711 -5.0154 -2.6575 42 1 7.9538 -4.6285 -2.9260 43 1 9.5547 -3.0516 -1.9262 44 1 8.8026 -0.8076 -1.2381 45 1 6.4547 -0.1495 -1.5550 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611002446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:54 Heat of formation + Delta-G solvation = -87.141805 kcal Electronic energy + Delta-G solvation = -28675.330943 eV Core-core repulsion = 24851.487898 eV Total energy + Delta-G solvation = -3823.843045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.28946 -38.59047 -37.29586 -36.90596 -34.92139 -32.85893 -32.53901 -31.44002 -29.80394 -29.05077 -27.08462 -26.24608 -25.39266 -23.53479 -23.16986 -22.60213 -21.50643 -19.79339 -18.44508 -17.21099 -16.62673 -16.52973 -16.17800 -15.79390 -15.49862 -15.21333 -15.01429 -14.65177 -14.39765 -14.34760 -13.93712 -13.46830 -13.23792 -13.14798 -12.78453 -12.47008 -12.32040 -12.19225 -12.05243 -11.77677 -11.59793 -11.44416 -11.43236 -11.26301 -10.99657 -10.80616 -10.72753 -10.63925 -10.35304 -10.07650 -9.64166 -9.26649 -9.18027 -9.00299 -8.63722 -8.26885 -8.04084 -7.68063 -6.24627 -4.32146 1.73286 1.84560 3.17884 3.27206 3.28891 3.30504 3.70926 4.19424 4.24512 4.29703 4.58673 4.94635 5.07959 5.11385 5.17164 5.32654 5.41699 5.42179 5.47538 5.50874 5.61645 5.67267 5.69650 5.70614 5.75508 5.79709 5.89842 5.90671 6.05974 6.06834 6.11185 6.16170 6.35141 6.41436 6.52130 6.71212 6.83149 6.96976 7.00994 7.17365 7.38632 7.47467 7.52650 7.64628 7.73701 7.97088 8.32268 8.73735 9.11645 9.36286 10.81419 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008779 B = 0.007297 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.737594 B = 3836.530184 C = 5775.919832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.365 6.365 3 C 0.045 3.955 4 C 0.124 3.876 5 N -0.594 5.594 6 C 0.233 3.767 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.071 3.929 10 N -0.886 5.886 11 Si 0.889 3.111 12 H -0.269 1.269 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.539 3.461 16 O -0.531 6.531 17 C 0.112 3.888 18 H 0.109 0.891 19 O -0.358 6.358 20 C 0.059 3.941 21 C -0.112 4.112 22 C -0.075 4.075 23 C -0.130 4.130 24 C -0.122 4.122 25 C -0.129 4.129 26 C -0.095 4.095 27 C -0.088 4.088 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.034 0.966 36 H 0.042 0.958 37 H 0.265 0.735 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.173 -6.338 3.285 7.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.283 6.283 3 C -0.034 4.034 4 C 0.000 4.000 5 N -0.327 5.327 6 C 0.113 3.887 7 C -0.581 4.581 8 H 0.087 0.913 9 C -0.133 4.133 10 N -0.524 5.524 11 Si 0.716 3.284 12 H -0.194 1.194 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.325 3.675 16 O -0.407 6.407 17 C 0.052 3.948 18 H 0.126 0.874 19 O -0.276 6.276 20 C -0.018 4.018 21 C -0.149 4.149 22 C -0.076 4.076 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.147 4.147 26 C -0.112 4.112 27 C -0.089 4.089 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.394 -6.797 3.730 7.877 hybrid contribution 1.133 0.825 -0.569 1.513 sum -0.261 -5.972 3.161 6.762 Atomic orbital electron populations 1.22664 0.82573 1.02064 0.99124 1.88165 1.18152 1.26843 1.95114 1.23024 0.95502 0.85359 0.99467 1.21346 0.92144 0.98090 0.88408 1.48008 1.67987 1.05526 1.11165 1.19521 0.96864 0.91892 0.80420 1.21589 0.93435 1.40754 1.02278 0.91310 1.24887 0.97774 0.95398 0.95233 1.69927 1.35446 1.42467 1.04545 0.86572 0.84833 0.78604 0.78410 1.19366 1.20865 1.20758 1.19533 0.77321 0.82363 0.88319 1.90615 1.49134 1.66194 1.34803 1.21012 0.86718 0.88251 0.98821 0.87376 1.88078 1.47631 1.37107 1.54799 1.22626 0.95712 0.93473 0.90036 1.21096 0.95546 0.97453 1.00793 1.19403 0.94393 0.94028 0.99739 1.20856 0.92768 0.99437 1.01730 1.21013 0.99009 0.94341 0.99605 1.21070 0.96108 0.96388 1.01115 1.21841 0.92950 1.00458 0.95962 1.19725 0.95177 0.94060 0.99914 0.94883 0.94640 0.90206 0.93358 0.93299 0.90328 0.88800 0.94795 0.93977 0.92494 0.92407 0.88405 0.90107 0.89966 0.86553 0.86601 0.86394 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -6.86 9.07 -49.39 -0.45 -7.31 16 3 C 0.04 0.73 6.32 37.15 0.23 0.96 16 4 C 0.12 2.24 5.88 -4.04 -0.02 2.22 16 5 N -0.59 -12.59 2.26 -175.06 -0.40 -12.98 16 6 C 0.23 5.33 4.79 -5.20 -0.02 5.31 16 7 C -0.54 -13.12 8.01 -34.44 -0.28 -13.39 16 8 H 0.07 1.66 5.42 -52.48 -0.28 1.37 16 9 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 10 N -0.89 -23.46 13.27 55.43 0.74 -22.72 16 11 Si 0.89 19.87 29.54 -169.99 -5.02 14.84 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 C 0.54 12.22 5.10 -10.99 -0.06 12.17 16 16 O -0.53 -13.27 15.53 -19.28 -0.30 -13.57 16 17 C 0.11 2.42 2.75 -29.06 -0.08 2.34 16 18 H 0.11 2.46 5.46 -51.93 -0.28 2.18 16 19 O -0.36 -7.32 10.31 -49.28 -0.51 -7.82 16 20 C 0.06 0.91 6.85 37.14 0.25 1.16 16 21 C -0.11 -1.62 6.00 -27.88 -0.17 -1.79 16 22 C -0.08 -1.34 5.78 -104.59 -0.60 -1.94 16 23 C -0.13 -2.04 9.67 -39.51 -0.38 -2.42 16 24 C -0.12 -1.91 10.05 -39.64 -0.40 -2.31 16 25 C -0.13 -2.30 10.05 -39.64 -0.40 -2.70 16 26 C -0.09 -1.94 8.71 -39.50 -0.34 -2.29 16 27 C -0.09 -1.80 5.46 -104.61 -0.57 -2.37 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.47 7.50 -51.93 -0.39 1.08 16 34 H 0.09 1.53 8.07 -51.93 -0.42 1.11 16 35 H 0.03 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.04 1.04 6.04 -51.93 -0.31 0.73 16 37 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.06 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.15 8.14 -51.92 -0.42 0.72 16 42 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.15 3.33 3.63 -52.48 -0.19 3.14 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -30.84 363.05 -8.79 -39.63 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.50 Total: 6.25 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.82 Total: -1.79 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.34 Total: -35.71 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.26 Total: -28.70 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.84 -8.79 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611002446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.514 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds