Wall clock time and date at job start Tue Mar 31 2020 12:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00132 * 2 1 4 4 C 1.52994 * 109.46924 * 184.91534 * 3 2 1 5 5 N 1.46506 * 109.47429 * 58.92822 * 4 3 2 6 6 C 1.46495 * 120.00093 * 90.03064 * 5 4 3 7 7 C 1.50699 * 109.47055 * 91.91289 * 6 5 4 8 8 H 1.08007 * 119.99630 * 354.30179 * 7 6 5 9 9 C 1.37877 * 120.00069 * 174.02171 * 7 6 5 10 10 N 1.31513 * 119.99972 * 355.12444 * 9 7 6 11 11 Si 1.86803 * 119.99789 * 175.12926 * 9 7 6 12 12 H 1.48500 * 109.47139 * 4.99746 * 11 9 7 13 13 H 1.48494 * 109.47326 * 125.00242 * 11 9 7 14 14 H 1.48502 * 109.46968 * 245.00208 * 11 9 7 15 15 C 1.34777 * 119.99785 * 270.03977 * 5 4 3 16 16 O 1.21278 * 120.00191 * 5.38928 * 15 5 4 17 17 C 1.50695 * 120.00009 * 185.39536 * 15 5 4 18 18 H 1.09001 * 109.33521 * 345.29070 * 17 15 5 19 19 O 1.42719 * 109.34144 * 225.77296 * 17 15 5 20 20 C 1.43202 * 113.14700 * 187.99413 * 19 17 15 21 21 C 1.52972 * 108.48103 * 70.65995 * 20 19 17 22 22 C 1.50742 * 109.76273 * 310.77960 * 21 20 19 23 23 C 1.38594 * 118.76603 * 196.78436 * 22 21 20 24 24 C 1.38062 * 120.27963 * 180.47327 * 23 22 21 25 25 C 1.38265 * 119.85794 * 359.97438 * 24 23 22 26 26 C 1.38048 * 119.89945 * 359.91230 * 25 24 23 27 27 C 1.37901 * 121.34788 * 17.07788 * 22 21 20 28 28 H 1.09003 * 109.47166 * 304.93781 * 1 2 3 29 29 H 1.09004 * 109.46907 * 64.93108 * 1 2 3 30 30 H 1.08992 * 109.47232 * 184.93144 * 1 2 3 31 31 H 1.08994 * 109.47216 * 64.91744 * 3 2 1 32 32 H 1.09000 * 109.47080 * 304.91229 * 3 2 1 33 33 H 1.09004 * 109.47303 * 298.93059 * 4 3 2 34 34 H 1.09003 * 109.47351 * 178.92798 * 4 3 2 35 35 H 1.09000 * 109.47161 * 331.91907 * 6 5 4 36 36 H 1.08995 * 109.47509 * 211.91592 * 6 5 4 37 37 H 0.97004 * 119.99670 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.63862 * 310.96489 * 20 19 17 39 39 H 1.09000 * 109.63854 * 190.36033 * 20 19 17 40 40 H 1.08999 * 109.42332 * 190.68251 * 21 20 19 41 41 H 1.09007 * 109.37095 * 70.83862 * 21 20 19 42 42 H 1.08000 * 119.86109 * 0.47393 * 23 22 21 43 43 H 1.08000 * 120.06995 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.04757 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.85188 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5306 1.1867 -0.1236 5 7 3.8662 0.4797 -1.3621 6 6 4.0705 1.2319 -2.6026 7 6 5.5310 1.5740 -2.7478 8 1 6.2214 1.3440 -1.9497 9 6 5.9867 2.1754 -3.9018 10 7 5.1672 2.3634 -4.9131 11 14 7.7681 2.7231 -4.0288 12 1 8.5061 2.2925 -2.8142 13 1 8.3902 2.1096 -5.2295 14 1 7.8241 4.2026 -4.1434 15 6 3.9869 -0.8626 -1.3603 16 8 3.7226 -1.4939 -0.3590 17 6 4.4502 -1.5792 -2.6024 18 1 4.3873 -0.9022 -3.4543 19 8 3.6105 -2.7090 -2.8373 20 6 4.0849 -3.5534 -3.8921 21 6 5.3447 -4.2732 -3.4076 22 6 6.2999 -3.2768 -2.8018 23 6 7.6242 -3.6453 -2.6242 24 6 8.5237 -2.7607 -2.0633 25 6 8.1017 -1.5018 -1.6776 26 6 6.7834 -1.1332 -1.8562 27 6 5.8793 -2.0202 -2.4202 28 1 -0.3634 0.5885 0.8425 29 1 -0.3633 0.4355 -0.9309 30 1 -0.3633 -1.0238 0.0883 31 1 1.7601 1.8145 0.9307 32 1 1.6208 1.8766 -0.8427 33 1 3.9223 0.6318 0.7290 34 1 3.9726 2.1829 -0.1428 35 1 3.4837 2.1499 -2.5717 36 1 3.7531 0.6261 -3.4513 37 1 5.4878 2.7869 -5.7248 38 1 4.3226 -2.9482 -4.7670 39 1 3.3194 -4.2862 -4.1471 40 1 5.8252 -4.7700 -4.2504 41 1 5.0711 -5.0154 -2.6575 42 1 7.9538 -4.6285 -2.9260 43 1 9.5547 -3.0516 -1.9262 44 1 8.8026 -0.8076 -1.2381 45 1 6.4547 -0.1495 -1.5550 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611002446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:54 Heat of formation + Delta-G solvation = -104.562340 kcal Electronic energy + Delta-G solvation = -28676.086354 eV Core-core repulsion = 24851.487898 eV Total energy + Delta-G solvation = -3824.598456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79354 -40.12867 -38.67710 -38.32910 -36.71126 -34.60476 -33.99543 -32.85989 -31.27048 -30.40333 -28.91238 -27.55277 -26.77098 -25.04454 -24.81358 -24.01722 -22.92251 -21.10784 -20.10339 -18.93018 -18.31311 -18.07709 -17.70017 -17.19420 -16.87710 -16.70097 -16.39071 -16.16071 -15.93899 -15.80768 -15.33696 -14.86796 -14.73843 -14.51643 -14.35243 -14.24373 -13.63492 -13.58932 -13.53379 -13.41606 -13.01973 -12.94924 -12.82600 -12.72145 -12.65986 -12.44237 -12.18963 -12.03018 -11.85210 -11.63346 -11.38382 -10.78682 -10.66093 -10.56017 -10.49031 -9.61694 -9.47871 -9.44102 -8.19286 -6.31392 0.37772 0.49909 1.38885 1.43249 1.52048 1.62737 2.09884 2.41848 2.84748 2.98282 3.09451 3.12628 3.65458 3.70683 3.84726 3.93949 4.15532 4.18512 4.22106 4.24042 4.28618 4.34149 4.42575 4.51971 4.54058 4.56970 4.59938 4.63474 4.77169 4.81290 4.82671 4.86679 4.93738 4.96044 5.10512 5.17848 5.25960 5.52578 5.59516 5.64043 5.73988 5.83880 6.03767 6.05648 6.13865 6.36566 6.52618 6.82182 7.32865 7.43346 8.86671 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008779 B = 0.007297 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.737594 B = 3836.530184 C = 5775.919832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.404 6.404 3 C 0.048 3.952 4 C 0.115 3.885 5 N -0.592 5.592 6 C 0.249 3.751 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.028 3.972 10 N -0.918 5.918 11 Si 0.942 3.058 12 H -0.263 1.263 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.536 3.464 16 O -0.561 6.561 17 C 0.120 3.880 18 H 0.082 0.918 19 O -0.383 6.383 20 C 0.047 3.953 21 C -0.107 4.107 22 C -0.089 4.089 23 C -0.124 4.124 24 C -0.114 4.114 25 C -0.142 4.142 26 C -0.124 4.124 27 C -0.121 4.121 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.029 0.971 36 H 0.020 0.980 37 H 0.266 0.734 38 H 0.054 0.946 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.092 0.908 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.132 0.868 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 -7.764 3.407 8.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C -0.029 4.029 4 C -0.007 4.007 5 N -0.323 5.323 6 C 0.128 3.872 7 C -0.574 4.574 8 H 0.087 0.913 9 C -0.172 4.172 10 N -0.557 5.557 11 Si 0.768 3.232 12 H -0.187 1.187 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.323 3.677 16 O -0.440 6.440 17 C 0.060 3.940 18 H 0.099 0.901 19 O -0.302 6.302 20 C -0.029 4.029 21 C -0.144 4.144 22 C -0.089 4.089 23 C -0.142 4.142 24 C -0.132 4.132 25 C -0.160 4.160 26 C -0.142 4.142 27 C -0.121 4.121 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.149 0.851 40 H 0.136 0.864 41 H 0.110 0.890 42 H 0.176 0.824 43 H 0.173 0.827 44 H 0.150 0.850 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.089 -8.205 3.862 9.069 hybrid contribution 0.643 1.200 -0.595 1.485 sum 0.732 -7.005 3.267 7.764 Atomic orbital electron populations 1.22832 0.80467 1.03004 1.00460 1.88110 1.20648 1.28171 1.95435 1.23018 0.93764 0.84945 1.01185 1.21606 0.94056 0.98342 0.86714 1.48011 1.67440 1.05349 1.11550 1.19202 0.96318 0.91110 0.80569 1.21733 0.93863 1.39709 1.02092 0.91348 1.25525 1.00992 0.95674 0.95032 1.70024 1.37020 1.43636 1.05053 0.85723 0.80981 0.78213 0.78259 1.18652 1.21178 1.20303 1.19831 0.76685 0.82644 0.88512 1.90571 1.50824 1.66734 1.35899 1.20738 0.88077 0.88290 0.96917 0.90087 1.88029 1.48376 1.37273 1.56508 1.23010 0.97664 0.93459 0.88716 1.21172 0.94388 0.96674 1.02151 1.19878 0.96218 0.93475 0.99295 1.21346 0.91609 1.01042 1.00203 1.21478 1.00933 0.93062 0.97697 1.21326 0.95169 0.98024 1.01442 1.21753 0.94594 0.99877 0.97929 1.19811 0.94324 0.95877 1.02127 0.92248 0.94257 0.89810 0.89905 0.93308 0.91122 0.87191 0.95335 0.96258 0.92499 0.92797 0.85122 0.86386 0.89017 0.82447 0.82697 0.85039 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -15.37 9.07 -135.44 -1.23 -16.60 16 3 C 0.05 1.58 6.32 71.98 0.45 2.03 16 4 C 0.12 4.29 5.88 86.38 0.51 4.80 16 5 N -0.59 -26.22 2.26 -826.17 -1.87 -28.09 16 6 C 0.25 11.95 4.79 85.63 0.41 12.36 16 7 C -0.54 -26.73 8.01 25.60 0.21 -26.53 16 8 H 0.07 3.41 5.42 -2.91 -0.02 3.39 16 9 C 0.03 1.46 5.45 84.65 0.46 1.92 16 10 N -0.92 -49.83 13.27 21.45 0.28 -49.55 16 11 Si 0.94 41.02 29.54 68.60 2.03 43.04 16 12 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 13 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 15 C 0.54 25.51 5.10 87.66 0.45 25.96 16 16 O -0.56 -29.21 15.53 20.73 0.32 -28.89 16 17 C 0.12 5.42 2.75 29.09 0.08 5.50 16 18 H 0.08 3.98 5.46 -2.39 -0.01 3.97 16 19 O -0.38 -16.08 10.31 -135.54 -1.40 -17.48 16 20 C 0.05 1.43 6.85 71.97 0.49 1.92 16 21 C -0.11 -2.84 6.00 29.85 0.18 -2.66 16 22 C -0.09 -3.00 5.78 -19.85 -0.11 -3.11 16 23 C -0.12 -3.46 9.67 22.31 0.22 -3.24 16 24 C -0.11 -3.22 10.05 22.23 0.22 -2.99 16 25 C -0.14 -4.90 10.05 22.23 0.22 -4.68 16 26 C -0.12 -5.19 8.71 22.32 0.19 -4.99 16 27 C -0.12 -5.03 5.46 -19.86 -0.11 -5.14 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 2.73 7.50 -2.38 -0.02 2.71 16 34 H 0.11 3.63 8.07 -2.39 -0.02 3.61 16 35 H 0.03 1.39 8.06 -2.39 -0.02 1.37 16 36 H 0.02 1.03 6.04 -2.39 -0.01 1.01 16 37 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 38 H 0.05 1.64 8.07 -2.39 -0.02 1.62 16 39 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 43 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 44 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 45 H 0.13 5.82 3.63 -2.91 -0.01 5.81 16 Total: -1.00 -69.61 363.05 4.25 -65.35 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 1.00 Total: 29.03 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 5.12 Total: 3.18 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -1.58 Total: -77.64 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: -2.30 Total: -62.97 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -69.61 4.25 -65.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611002446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.209 kcal (2) G-P(sol) polarization free energy of solvation -69.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds