Wall clock time and date at job start Tue Mar 31 2020 12:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99721 * 2 1 4 4 O 1.20821 * 120.00487 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99885 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47289 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.47334 * 54.99576 * 6 5 3 8 8 N 1.46903 * 109.46812 * 294.99675 * 6 5 3 9 9 C 1.46899 * 110.99981 * 138.78584 * 8 6 5 10 10 C 1.50699 * 109.47309 * 182.92537 * 9 8 6 11 11 C 1.38302 * 119.93132 * 269.72631 * 10 9 8 12 12 C 1.38096 * 120.07060 * 179.72558 * 11 10 9 13 13 C 1.38880 * 119.92731 * 0.56321 * 12 11 10 14 14 O 1.35751 * 120.06633 * 179.68611 * 13 12 11 15 15 C 1.34840 * 116.99753 * 185.93689 * 14 13 12 16 16 H 1.07989 * 120.00266 * 4.95591 * 15 14 13 17 17 C 1.38660 * 119.99733 * 184.95408 * 15 14 13 18 18 N 1.31549 * 119.99760 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99865 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47247 * 89.99883 * 19 17 15 21 21 H 1.48504 * 109.46704 * 209.99657 * 19 17 15 22 22 H 1.48497 * 109.47289 * 329.99303 * 19 17 15 23 23 C 1.38876 * 119.86490 * 359.70989 * 13 12 11 24 24 C 1.38096 * 119.93059 * 359.97438 * 23 13 12 25 25 C 1.53001 * 109.47120 * 174.99988 * 6 5 3 26 26 C 1.53003 * 117.49750 * 134.26162 * 25 6 5 27 27 C 1.52994 * 117.49982 * 65.60054 * 25 6 5 28 28 H 1.08993 * 109.47084 * 60.00219 * 1 2 3 29 29 H 1.09006 * 109.46967 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47082 * 300.00041 * 1 2 3 31 31 H 1.08994 * 109.47318 * 59.99572 * 5 3 2 32 32 H 1.09005 * 109.47136 * 299.99237 * 5 3 2 33 33 H 1.00899 * 110.99832 * 14.83016 * 8 6 5 34 34 H 1.09007 * 109.46761 * 302.91961 * 9 8 6 35 35 H 1.08993 * 109.47536 * 62.91935 * 9 8 6 36 36 H 1.08003 * 119.96003 * 359.97384 * 11 10 9 37 37 H 1.08002 * 120.03682 * 180.27279 * 12 11 10 38 38 H 0.97002 * 119.99753 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.03380 * 179.97438 * 23 13 12 40 40 H 1.08003 * 119.96672 * 179.97438 * 24 23 13 41 41 H 1.09004 * 115.54766 * 279.92904 * 25 6 5 42 42 H 1.08993 * 117.49900 * 359.97438 * 26 25 6 43 43 H 1.08996 * 117.49364 * 145.01858 * 26 25 6 44 44 H 1.09005 * 117.49961 * 214.97523 * 27 25 6 45 45 H 1.08998 * 117.49972 * 359.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 -0.0011 7 1 3.5381 3.2580 0.8407 8 7 3.5772 3.3773 -1.2564 9 6 3.0557 4.7289 -1.0129 10 6 2.5665 5.3198 -2.3100 11 6 3.4304 6.0521 -3.1039 12 6 2.9867 6.5901 -4.2959 13 6 1.6683 6.4051 -4.6914 14 8 1.2275 6.9382 -5.8595 15 6 -0.0899 6.8269 -6.1244 16 1 -0.7551 6.4031 -5.3869 17 6 -0.5905 7.2568 -7.3440 18 7 -1.8757 7.1479 -7.6027 19 14 0.5604 7.9894 -8.6200 20 1 1.0806 6.9089 -9.4958 21 1 -0.1790 8.9804 -9.4426 22 1 1.6944 8.6614 -7.9362 23 6 0.8018 5.6741 -3.8893 24 6 1.2533 5.1331 -2.7017 25 6 5.5228 2.8238 0.1240 26 6 6.2583 3.7829 -0.8142 27 6 6.3573 2.2711 -1.0330 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9557 0.7810 -0.8907 32 1 3.9564 0.7807 0.8892 33 1 2.8971 2.8086 -1.7382 34 1 2.2301 4.6773 -0.3030 35 1 3.8479 5.3558 -0.6039 36 1 4.4541 6.1998 -2.7932 37 1 3.6630 7.1581 -4.9175 38 1 -2.2258 7.4483 -8.4560 39 1 -0.2241 5.5289 -4.1941 40 1 0.5797 4.5648 -2.0772 41 1 5.9187 2.7038 1.1325 42 1 5.6574 4.3552 -1.5208 43 1 7.1383 4.2934 -0.4231 44 1 7.3026 1.7877 -0.7858 45 1 5.8217 1.8488 -1.8832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754517541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:26 Heat of formation + Delta-G solvation = -59.569297 kcal Electronic energy + Delta-G solvation = -26533.698090 eV Core-core repulsion = 22711.050678 eV Total energy + Delta-G solvation = -3822.647412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86867 -39.23383 -38.55255 -36.78699 -36.68299 -34.39898 -32.43997 -31.83928 -30.18141 -29.19257 -27.79272 -25.64621 -24.87225 -23.68391 -22.35907 -21.97187 -21.21594 -20.31298 -19.54718 -17.94572 -17.82211 -17.26160 -16.94548 -16.75200 -16.19239 -15.37290 -15.03040 -14.78064 -14.29827 -14.17098 -13.87720 -13.76067 -13.67751 -13.42395 -13.26354 -12.74622 -12.60239 -12.50913 -12.29152 -12.13898 -12.09784 -11.60050 -11.56614 -11.30951 -11.21847 -11.05884 -10.81013 -10.70593 -10.62466 -10.49636 -10.30716 -10.11133 -9.98345 -9.36813 -8.84612 -8.37240 -8.18034 -7.26759 -6.39445 -4.05689 1.94461 2.20118 2.24489 2.43166 3.23612 3.27288 3.42341 3.75613 4.15239 4.25872 4.37604 4.60775 4.64362 4.79209 4.86248 4.92270 4.94585 4.96709 5.03612 5.09490 5.11794 5.19826 5.31371 5.42427 5.47222 5.60117 5.65073 5.70742 5.78014 5.89193 5.91469 5.97852 6.13106 6.16505 6.20342 6.40048 6.43138 6.64693 6.86017 7.03091 7.15720 7.31830 7.35159 7.46167 7.50877 7.66701 7.83572 8.07188 8.96184 9.59638 10.68441 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014238 B = 0.003064 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.121789 B = 9135.750470 C =10586.427243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.454 3.546 4 O -0.500 6.500 5 C -0.121 4.121 6 C 0.125 3.875 7 H 0.065 0.935 8 N -0.672 5.672 9 C 0.119 3.881 10 C -0.174 4.174 11 C -0.056 4.056 12 C -0.195 4.195 13 C 0.161 3.839 14 O -0.219 6.219 15 C -0.388 4.388 16 H 0.105 0.895 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.222 4.222 24 C -0.064 4.064 25 C -0.155 4.155 26 C -0.160 4.160 27 C -0.170 4.170 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.341 0.659 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.279 0.721 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.224 -13.453 17.207 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.297 3.703 4 O -0.387 6.387 5 C -0.159 4.159 6 C 0.015 3.985 7 H 0.083 0.917 8 N -0.304 5.304 9 C -0.009 4.009 10 C -0.175 4.175 11 C -0.075 4.075 12 C -0.214 4.214 13 C 0.109 3.891 14 O -0.124 6.124 15 C -0.464 4.464 16 H 0.122 0.878 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.241 4.241 24 C -0.083 4.083 25 C -0.174 4.174 26 C -0.197 4.197 27 C -0.207 4.207 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.160 0.840 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.089 0.911 39 H 0.148 0.852 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.133 0.867 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.533 -12.774 16.706 24.481 hybrid contribution -0.968 -0.016 -0.176 0.984 sum 11.565 -12.790 16.529 23.887 Atomic orbital electron populations 1.23287 0.76050 1.03705 1.02845 1.86494 1.23692 1.33540 1.84103 1.23936 0.92356 0.81515 0.72494 1.90731 1.67232 1.36067 1.44631 1.21775 0.87124 1.00360 1.06645 1.20830 0.93592 0.90538 0.93552 0.91669 1.60733 1.45453 1.04073 1.20132 1.20697 0.97424 0.88675 0.94108 1.19227 0.94230 1.05631 0.98393 1.20466 0.97977 0.95965 0.93054 1.20204 0.94183 1.08020 0.99010 1.19150 0.92572 0.91119 0.86292 1.83585 1.27373 1.68409 1.33040 1.20762 0.79387 1.43103 1.03144 0.87751 1.24466 0.95994 0.96528 0.97051 1.69648 1.11831 1.45728 1.24725 0.86177 0.80851 0.79327 0.80527 1.19923 1.20813 1.18328 1.21245 1.01396 1.04546 0.96945 1.20703 0.94768 0.97491 0.95360 1.22278 0.92374 1.07557 0.95196 1.22942 1.01187 0.92830 1.02721 1.22803 1.00550 0.97317 1.00071 0.91514 0.88125 0.91922 0.86820 0.87076 0.83966 0.94359 0.91235 0.86940 0.86654 0.91104 0.85178 0.87531 0.88188 0.86684 0.90071 0.89809 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.54 10.57 -39.25 -0.41 -3.96 16 3 C 0.45 4.77 7.38 36.01 0.27 5.04 16 4 O -0.50 -6.74 14.16 -18.75 -0.27 -7.01 16 5 C -0.12 -0.95 5.12 -27.88 -0.14 -1.10 16 6 C 0.13 1.19 2.10 -67.71 -0.14 1.05 16 7 H 0.07 0.69 7.38 -51.93 -0.38 0.31 16 8 N -0.67 -8.05 4.46 -107.99 -0.48 -8.53 16 9 C 0.12 1.64 5.01 -4.98 -0.02 1.61 16 10 C -0.17 -2.94 5.37 -104.57 -0.56 -3.51 16 11 C -0.06 -0.97 9.69 -39.61 -0.38 -1.35 16 12 C -0.19 -3.94 9.99 -39.40 -0.39 -4.34 16 13 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 14 O -0.22 -5.90 8.59 0.02 0.00 -5.90 16 15 C -0.39 -11.15 9.91 30.89 0.31 -10.84 16 16 H 0.11 3.07 5.52 -52.49 -0.29 2.78 16 17 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 18 N -0.88 -25.79 13.96 55.48 0.77 -25.02 16 19 Si 0.91 21.98 28.62 -169.99 -4.86 17.12 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.22 -4.95 9.13 -39.40 -0.36 -5.31 16 24 C -0.06 -1.22 9.69 -39.61 -0.38 -1.61 16 25 C -0.16 -1.31 5.78 -90.62 -0.52 -1.83 16 26 C -0.16 -1.53 9.80 -26.69 -0.26 -1.79 16 27 C -0.17 -1.45 9.74 -26.70 -0.26 -1.71 16 28 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.11 0.82 7.87 -51.93 -0.41 0.41 16 32 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.34 4.55 6.87 -39.29 -0.27 4.28 16 34 H 0.04 0.57 7.56 -51.92 -0.39 0.17 16 35 H 0.07 0.90 7.71 -51.93 -0.40 0.50 16 36 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.13 3.07 5.71 -52.48 -0.30 2.77 16 40 H 0.11 1.90 8.06 -52.48 -0.42 1.48 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.11 1.33 6.34 -51.93 -0.33 1.00 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.90 8.03 -51.93 -0.42 0.49 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -31.00 375.53 -8.30 -39.30 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.55 Total: 7.45 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -2.16 Total: -19.11 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.29 Total: -33.55 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.68 Total: -16.86 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.86 Total: 17.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.00 -8.30 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754517541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.270 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds