Wall clock time and date at job start Tue Mar 31 2020 12:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99721 * 2 1 4 4 O 1.20821 * 120.00487 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99885 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47289 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.47334 * 54.99576 * 6 5 3 8 8 N 1.46903 * 109.46812 * 294.99675 * 6 5 3 9 9 C 1.46899 * 110.99981 * 138.78584 * 8 6 5 10 10 C 1.50699 * 109.47309 * 182.92537 * 9 8 6 11 11 C 1.38302 * 119.93132 * 269.72631 * 10 9 8 12 12 C 1.38096 * 120.07060 * 179.72558 * 11 10 9 13 13 C 1.38880 * 119.92731 * 0.56321 * 12 11 10 14 14 O 1.35751 * 120.06633 * 179.68611 * 13 12 11 15 15 C 1.34840 * 116.99753 * 185.93689 * 14 13 12 16 16 H 1.07989 * 120.00266 * 4.95591 * 15 14 13 17 17 C 1.38660 * 119.99733 * 184.95408 * 15 14 13 18 18 N 1.31549 * 119.99760 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99865 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47247 * 89.99883 * 19 17 15 21 21 H 1.48504 * 109.46704 * 209.99657 * 19 17 15 22 22 H 1.48497 * 109.47289 * 329.99303 * 19 17 15 23 23 C 1.38876 * 119.86490 * 359.70989 * 13 12 11 24 24 C 1.38096 * 119.93059 * 359.97438 * 23 13 12 25 25 C 1.53001 * 109.47120 * 174.99988 * 6 5 3 26 26 C 1.53003 * 117.49750 * 134.26162 * 25 6 5 27 27 C 1.52994 * 117.49982 * 65.60054 * 25 6 5 28 28 H 1.08993 * 109.47084 * 60.00219 * 1 2 3 29 29 H 1.09006 * 109.46967 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47082 * 300.00041 * 1 2 3 31 31 H 1.08994 * 109.47318 * 59.99572 * 5 3 2 32 32 H 1.09005 * 109.47136 * 299.99237 * 5 3 2 33 33 H 1.00899 * 110.99832 * 14.83016 * 8 6 5 34 34 H 1.09007 * 109.46761 * 302.91961 * 9 8 6 35 35 H 1.08993 * 109.47536 * 62.91935 * 9 8 6 36 36 H 1.08003 * 119.96003 * 359.97384 * 11 10 9 37 37 H 1.08002 * 120.03682 * 180.27279 * 12 11 10 38 38 H 0.97002 * 119.99753 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.03380 * 179.97438 * 23 13 12 40 40 H 1.08003 * 119.96672 * 179.97438 * 24 23 13 41 41 H 1.09004 * 115.54766 * 279.92904 * 25 6 5 42 42 H 1.08993 * 117.49900 * 359.97438 * 26 25 6 43 43 H 1.08996 * 117.49364 * 145.01858 * 26 25 6 44 44 H 1.09005 * 117.49961 * 214.97523 * 27 25 6 45 45 H 1.08998 * 117.49972 * 359.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 -0.0011 7 1 3.5381 3.2580 0.8407 8 7 3.5772 3.3773 -1.2564 9 6 3.0557 4.7289 -1.0129 10 6 2.5665 5.3198 -2.3100 11 6 3.4304 6.0521 -3.1039 12 6 2.9867 6.5901 -4.2959 13 6 1.6683 6.4051 -4.6914 14 8 1.2275 6.9382 -5.8595 15 6 -0.0899 6.8269 -6.1244 16 1 -0.7551 6.4031 -5.3869 17 6 -0.5905 7.2568 -7.3440 18 7 -1.8757 7.1479 -7.6027 19 14 0.5604 7.9894 -8.6200 20 1 1.0806 6.9089 -9.4958 21 1 -0.1790 8.9804 -9.4426 22 1 1.6944 8.6614 -7.9362 23 6 0.8018 5.6741 -3.8893 24 6 1.2533 5.1331 -2.7017 25 6 5.5228 2.8238 0.1240 26 6 6.2583 3.7829 -0.8142 27 6 6.3573 2.2711 -1.0330 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9557 0.7810 -0.8907 32 1 3.9564 0.7807 0.8892 33 1 2.8971 2.8086 -1.7382 34 1 2.2301 4.6773 -0.3030 35 1 3.8479 5.3558 -0.6039 36 1 4.4541 6.1998 -2.7932 37 1 3.6630 7.1581 -4.9175 38 1 -2.2258 7.4483 -8.4560 39 1 -0.2241 5.5289 -4.1941 40 1 0.5797 4.5648 -2.0772 41 1 5.9187 2.7038 1.1325 42 1 5.6574 4.3552 -1.5208 43 1 7.1383 4.2934 -0.4231 44 1 7.3026 1.7877 -0.7858 45 1 5.8217 1.8488 -1.8832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754517541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:25 Heat of formation + Delta-G solvation = -77.197340 kcal Electronic energy + Delta-G solvation = -26534.462499 eV Core-core repulsion = 22711.050678 eV Total energy + Delta-G solvation = -3823.411821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.68935 -40.91109 -39.50378 -38.37892 -37.49829 -35.40578 -34.45859 -32.90900 -31.82360 -30.46814 -28.62744 -27.43653 -25.86529 -24.95011 -23.67747 -23.03122 -21.99401 -21.85676 -20.30672 -19.81630 -19.11519 -18.70600 -17.77879 -17.53933 -17.03743 -16.70112 -16.42379 -16.07136 -15.83973 -15.58422 -15.46663 -14.90722 -14.80520 -14.44968 -14.39471 -14.23281 -14.15853 -13.98890 -13.49296 -13.28223 -13.00152 -12.91506 -12.58801 -12.45617 -12.40319 -12.37471 -12.04451 -11.93771 -11.86492 -11.82885 -11.50395 -11.31051 -10.98511 -10.91203 -10.67616 -9.81359 -9.37392 -8.98301 -8.51719 -6.24508 0.56133 0.61740 1.14601 1.30467 1.35085 1.51699 1.73795 2.27372 2.71630 3.03343 3.08825 3.10445 3.43016 3.64731 3.92993 4.02861 4.04126 4.09922 4.18088 4.25530 4.27681 4.32397 4.41621 4.47376 4.51623 4.57321 4.58923 4.69466 4.74799 4.83623 4.89982 4.94652 4.98747 5.08849 5.25322 5.26420 5.35441 5.39630 5.50283 5.56915 5.67676 5.75122 5.81419 5.89863 6.11441 6.25018 6.40522 6.68381 6.82466 7.56837 8.60250 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014238 B = 0.003064 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.121789 B = 9135.750470 C =10586.427243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.452 3.548 4 O -0.536 6.536 5 C -0.114 4.114 6 C 0.126 3.874 7 H 0.058 0.942 8 N -0.670 5.670 9 C 0.127 3.873 10 C -0.147 4.147 11 C -0.045 4.045 12 C -0.190 4.190 13 C 0.121 3.879 14 O -0.244 6.244 15 C -0.400 4.400 16 H 0.076 0.924 17 C 0.009 3.991 18 N -0.924 5.924 19 Si 0.973 3.027 20 H -0.265 1.265 21 H -0.266 1.266 22 H -0.261 1.261 23 C -0.237 4.237 24 C -0.068 4.068 25 C -0.145 4.145 26 C -0.173 4.173 27 C -0.165 4.165 28 H 0.052 0.948 29 H 0.130 0.870 30 H 0.061 0.939 31 H 0.125 0.875 32 H 0.142 0.858 33 H 0.333 0.667 34 H 0.030 0.970 35 H 0.089 0.911 36 H 0.155 0.845 37 H 0.131 0.869 38 H 0.285 0.715 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.784 -14.528 18.965 28.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.297 3.703 4 O -0.426 6.426 5 C -0.151 4.151 6 C 0.016 3.984 7 H 0.076 0.924 8 N -0.301 5.301 9 C -0.001 4.001 10 C -0.148 4.148 11 C -0.064 4.064 12 C -0.209 4.209 13 C 0.072 3.928 14 O -0.152 6.152 15 C -0.477 4.477 16 H 0.093 0.907 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.795 3.205 20 H -0.190 1.190 21 H -0.191 1.191 22 H -0.185 1.185 23 C -0.257 4.257 24 C -0.087 4.087 25 C -0.164 4.164 26 C -0.210 4.210 27 C -0.202 4.202 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.048 0.952 35 H 0.107 0.893 36 H 0.172 0.828 37 H 0.149 0.851 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.120 -13.883 18.510 28.200 hybrid contribution -1.971 0.146 -0.397 2.016 sum 14.149 -13.738 18.113 26.777 Atomic orbital electron populations 1.23463 0.75312 1.05455 1.02121 1.86497 1.24504 1.33232 1.83737 1.24499 0.93369 0.81117 0.71293 1.90719 1.68214 1.37174 1.46498 1.21831 0.85173 0.99547 1.08590 1.20886 0.94440 0.91282 0.91818 0.92389 1.60744 1.44501 1.03181 1.21638 1.20629 0.97771 0.90044 0.91666 1.19676 0.92965 1.03148 0.98989 1.20905 0.99759 0.94216 0.91481 1.20547 0.92741 1.07574 1.00040 1.19666 0.94334 0.92681 0.86085 1.83522 1.25909 1.70764 1.34959 1.20676 0.80379 1.43497 1.03116 0.90659 1.25315 0.97609 0.96993 0.98968 1.69734 1.13454 1.47563 1.25777 0.85182 0.78610 0.78871 0.77830 1.19041 1.19066 1.18537 1.21197 1.00303 1.05725 0.98455 1.20826 0.96194 0.97360 0.94277 1.22281 0.91149 1.06813 0.96139 1.22926 1.01662 0.93343 1.03049 1.22817 1.01097 0.96577 0.99691 0.92917 0.85201 0.92003 0.85721 0.84012 0.84939 0.95218 0.89271 0.82787 0.85111 0.90534 0.87967 0.86634 0.86175 0.88550 0.89103 0.88302 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -6.57 10.57 -51.39 -0.54 -7.11 16 3 C 0.45 8.80 7.38 71.24 0.53 9.32 16 4 O -0.54 -14.12 14.16 21.98 0.31 -13.81 16 5 C -0.11 -1.45 5.12 29.85 0.15 -1.30 16 6 C 0.13 2.01 2.10 44.92 0.09 2.11 16 7 H 0.06 1.06 7.38 -2.39 -0.02 1.04 16 8 N -0.67 -14.43 4.46 -495.57 -2.21 -16.64 16 9 C 0.13 3.19 5.01 85.56 0.43 3.62 16 10 C -0.15 -4.71 5.37 -19.83 -0.11 -4.82 16 11 C -0.05 -1.44 9.69 22.25 0.22 -1.22 16 12 C -0.19 -7.46 9.99 22.39 0.22 -7.24 16 13 C 0.12 5.91 6.65 22.58 0.15 6.06 16 14 O -0.24 -13.68 8.59 -22.85 -0.20 -13.87 16 15 C -0.40 -24.39 9.91 67.92 0.67 -23.72 16 16 H 0.08 4.86 5.52 -2.92 -0.02 4.84 16 17 C 0.01 0.55 5.49 84.84 0.47 1.02 16 18 N -0.92 -56.47 13.96 21.61 0.30 -56.16 16 19 Si 0.97 46.33 28.62 68.60 1.96 48.29 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 23 C -0.24 -11.15 9.13 22.39 0.20 -10.95 16 24 C -0.07 -2.60 9.69 22.25 0.22 -2.39 16 25 C -0.15 -1.87 5.78 -10.79 -0.06 -1.94 16 26 C -0.17 -2.69 9.80 30.62 0.30 -2.39 16 27 C -0.16 -2.21 9.74 30.62 0.30 -1.91 16 28 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 29 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 31 H 0.12 1.39 7.87 -2.39 -0.02 1.37 16 32 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.33 8.32 6.87 -89.69 -0.62 7.71 16 34 H 0.03 0.82 7.56 -2.38 -0.02 0.81 16 35 H 0.09 1.96 7.71 -2.39 -0.02 1.94 16 36 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.29 15.91 8.31 -92.71 -0.77 15.14 16 39 H 0.10 5.32 5.71 -2.91 -0.02 5.30 16 40 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.10 1.88 6.34 -2.39 -0.02 1.87 16 43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.09 1.36 8.03 -2.39 -0.02 1.34 16 Total: -1.00 -71.31 375.53 4.99 -66.32 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.39 Total: 27.08 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 4.98 Total: -34.09 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -1.91 Total: -72.80 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.43 Total: -34.79 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.96 Total: 48.29 kcal Total: -71.31 4.99 -66.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754517541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.877 kcal (2) G-P(sol) polarization free energy of solvation -71.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds