Wall clock time and date at job start Tue Mar 31 2020 12:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41599 * 113.99739 * 2 1 4 4 C 1.34783 * 120.00005 * 89.99877 * 3 2 1 5 5 O 1.21284 * 119.99976 * 180.02562 * 4 3 2 6 6 C 1.50699 * 120.00059 * 359.97438 * 4 3 2 7 7 C 1.50699 * 109.47151 * 180.02562 * 6 4 3 8 8 C 1.38328 * 119.96224 * 270.02423 * 7 6 4 9 9 C 1.38279 * 120.13490 * 179.97438 * 8 7 6 10 10 C 1.38120 * 120.06774 * 359.77134 * 9 8 7 11 11 C 1.38852 * 119.93464 * 0.50144 * 10 9 8 12 12 O 1.35752 * 120.07221 * 179.74702 * 11 10 9 13 13 C 1.34829 * 116.99954 * 354.17311 * 12 11 10 14 14 H 1.07998 * 119.99999 * 5.03596 * 13 12 11 15 15 C 1.38656 * 119.99670 * 185.03445 * 13 12 11 16 16 N 1.31550 * 120.00275 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99668 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47010 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46908 * 119.99967 * 17 15 13 20 20 H 1.48504 * 109.47373 * 240.00300 * 17 15 13 21 21 C 1.38073 * 119.96539 * 89.99818 * 7 6 4 22 22 C 1.46503 * 120.00410 * 269.99616 * 3 2 1 23 23 C 1.54265 * 110.03670 * 237.91416 * 22 3 2 24 24 C 1.54961 * 104.15803 * 217.13359 * 23 22 3 25 25 C 1.54885 * 102.77772 * 37.88446 * 24 23 22 26 26 C 1.53869 * 110.03538 * 120.68792 * 22 3 2 27 27 H 1.08997 * 109.46947 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47195 * 300.00414 * 1 2 3 29 29 H 1.09007 * 109.46771 * 60.00464 * 1 2 3 30 30 H 1.09004 * 109.46756 * 60.00007 * 6 4 3 31 31 H 1.08998 * 109.46908 * 300.00650 * 6 4 3 32 32 H 1.08001 * 119.93314 * 359.97438 * 8 7 6 33 33 H 1.07999 * 119.96467 * 180.02562 * 9 8 7 34 34 H 1.08006 * 120.03757 * 180.27571 * 10 9 8 35 35 H 0.96999 * 119.99936 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.03547 * 0.04988 * 21 7 6 37 37 H 1.09007 * 110.01122 * 359.29734 * 22 3 2 38 38 H 1.09007 * 110.47791 * 335.77720 * 23 22 3 39 39 H 1.08992 * 110.48913 * 98.41928 * 23 22 3 40 40 H 1.08995 * 110.71873 * 279.56986 * 24 23 22 41 41 H 1.09003 * 110.91953 * 156.29171 * 24 23 22 42 42 H 1.09004 * 110.48335 * 203.40420 * 25 24 23 43 43 H 1.09004 * 110.60162 * 80.82217 * 25 24 23 44 44 H 1.08997 * 110.03766 * 238.57248 * 26 22 3 45 45 H 1.09002 * 110.03174 * 0.02562 * 26 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2790 1.9093 1.1673 5 8 2.7718 3.0175 1.1673 6 6 1.9720 1.2212 2.4724 7 6 2.3698 2.1160 3.6178 8 6 3.6471 2.0392 4.1431 9 6 4.0161 2.8590 5.1938 10 6 3.1111 3.7607 5.7188 11 6 1.8264 3.8362 5.1975 12 8 0.9330 4.7178 5.7148 13 6 1.3153 5.4051 6.8099 14 1 2.3218 5.3025 7.1878 15 6 0.4162 6.2437 7.4510 16 7 -0.8099 6.3683 6.9910 17 14 0.9457 7.1954 8.9687 18 1 2.3635 6.8821 9.2797 19 1 0.8054 8.6516 8.7137 20 1 0.0892 6.8094 10.1188 21 6 1.4590 3.0121 4.1414 22 6 2.3029 1.9628 -1.2687 23 6 3.8033 2.3140 -1.3414 24 6 3.8369 3.6872 -2.0585 25 6 2.5942 4.4071 -1.4786 26 6 1.5343 3.2929 -1.3564 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 2.5298 0.2865 2.5303 31 1 0.9040 1.0110 2.5298 32 1 4.3577 1.3376 3.7318 33 1 5.0142 2.7971 5.6016 34 1 3.4012 4.4039 6.5365 35 1 -1.4390 6.9547 7.4397 36 1 0.4618 3.0712 3.7310 37 1 2.0296 1.3179 -2.1039 38 1 4.2246 2.3966 -0.3394 39 1 4.3425 1.5659 -1.9224 40 1 3.7422 3.5614 -3.1371 41 1 4.7485 4.2322 -1.8133 42 1 2.2520 5.1861 -2.1599 43 1 2.8182 4.8298 -0.4991 44 1 0.8886 3.2939 -2.2345 45 1 0.9398 3.4408 -0.4547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757626626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:52 Heat of formation + Delta-G solvation = -53.155320 kcal Electronic energy + Delta-G solvation = -27161.753203 eV Core-core repulsion = 23339.383922 eV Total energy + Delta-G solvation = -3822.369281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53944 -40.66628 -38.76441 -38.15333 -37.84101 -34.34735 -33.54418 -33.23392 -30.93451 -29.67979 -29.41374 -28.19012 -27.35753 -26.72189 -23.43110 -23.12863 -22.09729 -21.60100 -20.48047 -19.60128 -19.03343 -18.58230 -17.62694 -17.09089 -16.72152 -16.38953 -16.31857 -16.11286 -15.66601 -15.59544 -15.39322 -15.29538 -14.98916 -14.92077 -14.37879 -14.10675 -14.02548 -13.60729 -13.46370 -13.01128 -12.98410 -12.70236 -12.53669 -12.48502 -12.39428 -12.24840 -12.09109 -12.05487 -11.96294 -11.91213 -11.53705 -11.42802 -11.21520 -10.82853 -10.66671 -9.99861 -9.65824 -8.99379 -8.47721 -6.16270 0.47196 0.73518 0.91924 1.33852 1.42620 1.49988 1.52625 2.17096 2.74174 3.01015 3.24491 3.41878 3.62857 3.70767 3.80114 3.89737 4.06706 4.21843 4.27863 4.32139 4.39234 4.42161 4.46798 4.48967 4.53763 4.55365 4.59054 4.59768 4.71661 4.75541 4.81049 4.86200 5.02087 5.04694 5.12147 5.13247 5.24551 5.26970 5.28552 5.49567 5.56200 5.63343 5.71176 5.73923 6.02098 6.20515 6.42811 6.96960 7.07267 7.78168 8.76047 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.003090 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.049432 B = 9058.065954 C = 9309.750933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 O -0.147 6.147 3 N -0.477 5.477 4 C 0.523 3.477 5 O -0.530 6.530 6 C -0.087 4.087 7 C -0.024 4.024 8 C -0.179 4.179 9 C -0.071 4.071 10 C -0.244 4.244 11 C 0.114 3.886 12 O -0.234 6.234 13 C -0.414 4.414 14 H 0.101 0.899 15 C -0.023 4.023 16 N -0.922 5.922 17 Si 1.020 2.980 18 H -0.252 1.252 19 H -0.269 1.269 20 H -0.266 1.266 21 C -0.191 4.191 22 C 0.145 3.855 23 C -0.130 4.130 24 C -0.111 4.111 25 C -0.122 4.122 26 C -0.131 4.131 27 H 0.136 0.864 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.133 0.867 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.119 0.881 35 H 0.272 0.728 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.092 0.908 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.603 -13.929 -18.131 23.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 O -0.151 6.151 3 N -0.256 5.256 4 C 0.313 3.687 5 O -0.406 6.406 6 C -0.127 4.127 7 C -0.025 4.025 8 C -0.198 4.198 9 C -0.089 4.089 10 C -0.264 4.264 11 C 0.064 3.936 12 O -0.141 6.141 13 C -0.490 4.490 14 H 0.118 0.882 15 C -0.221 4.221 16 N -0.560 5.560 17 Si 0.839 3.161 18 H -0.175 1.175 19 H -0.194 1.194 20 H -0.191 1.191 21 C -0.210 4.210 22 C 0.044 3.956 23 C -0.168 4.168 24 C -0.149 4.149 25 C -0.159 4.159 26 C -0.169 4.169 27 H 0.154 0.846 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.151 0.849 31 H 0.127 0.873 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.141 0.859 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.111 0.889 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.563 -13.359 -18.164 23.483 hybrid contribution -0.670 0.842 1.000 1.469 sum 5.894 -12.516 -17.164 22.045 Atomic orbital electron populations 1.23638 0.80196 1.05713 1.01617 1.90604 1.21568 1.06103 1.96812 1.50416 1.58870 1.10401 1.05913 1.20849 0.77631 0.85113 0.85118 1.90795 1.43884 1.19613 1.86303 1.20636 1.04889 0.98975 0.88175 1.19117 0.93473 0.94893 0.95021 1.20933 0.95956 1.03406 0.99457 1.21119 0.98926 0.93484 0.95353 1.21294 0.94203 1.05285 1.05585 1.19831 0.90103 0.89800 0.93834 1.83935 1.40014 1.48020 1.42149 1.21873 0.99603 1.23759 1.03789 0.88211 1.26603 0.94700 0.98236 1.02513 1.70193 1.05770 1.38198 1.41851 0.84520 0.79140 0.77277 0.75180 1.17501 1.19356 1.19089 1.20144 1.00687 1.00324 0.99867 1.22234 0.95787 0.93166 0.84375 1.22696 0.94579 0.98223 1.01284 1.22387 0.97539 0.94618 1.00311 1.22250 0.95794 0.97597 1.00295 1.22527 0.98302 0.94430 1.01653 0.84621 0.93499 0.92123 0.84884 0.87286 0.83817 0.83600 0.86355 0.91856 0.87842 0.85889 0.92645 0.89350 0.88998 0.91786 0.90766 0.94121 0.88925 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 11.44 113.37 1.30 1.11 16 2 O -0.15 -2.70 10.84 -38.78 -0.42 -3.12 16 3 N -0.48 -10.85 2.91 -439.09 -1.28 -12.13 16 4 C 0.52 15.29 6.60 87.66 0.58 15.87 16 5 O -0.53 -19.58 12.03 -3.04 -0.04 -19.62 16 6 C -0.09 -2.38 5.13 29.10 0.15 -2.23 16 7 C -0.02 -0.89 4.37 -19.88 -0.09 -0.98 16 8 C -0.18 -6.12 9.70 22.30 0.22 -5.90 16 9 C -0.07 -2.63 10.04 22.25 0.22 -2.41 16 10 C -0.24 -11.40 9.17 22.39 0.21 -11.20 16 11 C 0.11 6.09 6.65 22.58 0.15 6.24 16 12 O -0.23 -14.81 9.76 -22.74 -0.22 -15.04 16 13 C -0.41 -25.12 9.49 67.92 0.64 -24.47 16 14 H 0.10 5.59 5.21 -2.91 -0.02 5.57 16 15 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 16 N -0.92 -58.05 13.67 21.61 0.30 -57.76 16 17 Si 1.02 44.16 29.55 68.60 2.03 46.18 16 18 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 21 C -0.19 -8.80 9.65 22.39 0.22 -8.59 16 22 C 0.14 2.83 3.63 45.71 0.17 3.00 16 23 C -0.13 -2.61 6.08 31.69 0.19 -2.42 16 24 C -0.11 -2.06 6.91 31.91 0.22 -1.84 16 25 C -0.12 -2.83 6.39 31.67 0.20 -2.63 16 26 C -0.13 -2.84 5.79 31.32 0.18 -2.66 16 27 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.72 7.13 -2.39 -0.02 0.70 16 29 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.13 2.81 8.09 -2.38 -0.02 2.79 16 31 H 0.11 2.66 7.07 -2.39 -0.02 2.64 16 32 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 33 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 34 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 37 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.05 1.49 6.12 -2.38 -0.01 1.48 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.04 1.27 7.30 -2.38 -0.02 1.26 16 44 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.04 1.13 7.10 -2.39 -0.02 1.11 16 Total: -1.00 -79.17 367.86 6.38 -72.79 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.99 Total: 28.70 kcal Atomic # 6 Polarization: -45.04 SS G_CDS: 5.02 Total: -40.01 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -0.98 Total: -69.89 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.68 Total: -37.77 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -79.17 6.38 -72.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757626626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.634 kcal (2) G-P(sol) polarization free energy of solvation -79.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds