Wall clock time and date at job start Tue Mar 31 2020 12:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 117.00027 * 2 1 4 4 O 1.20824 * 119.99847 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99750 * 179.97438 * 3 2 1 6 6 N 1.46896 * 110.02316 * 325.91344 * 5 3 2 7 7 C 1.46902 * 111.00161 * 297.52904 * 6 5 3 8 8 C 1.50694 * 109.47239 * 184.24051 * 7 6 5 9 9 C 1.38300 * 119.92949 * 269.72224 * 8 7 6 10 10 C 1.38101 * 120.06927 * 179.72592 * 9 8 7 11 11 C 1.38881 * 119.92975 * 0.57184 * 10 9 8 12 12 O 1.35745 * 120.06874 * 179.68455 * 11 10 9 13 13 C 1.34840 * 116.99894 * 175.05853 * 12 11 10 14 14 H 1.07994 * 119.99779 * 5.07977 * 13 12 11 15 15 C 1.38653 * 119.99801 * 185.08381 * 13 12 11 16 16 N 1.31553 * 119.99800 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99994 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46915 * 90.00748 * 17 15 13 19 19 H 1.48503 * 109.46917 * 210.00314 * 17 15 13 20 20 H 1.48493 * 109.47257 * 330.00255 * 17 15 13 21 21 C 1.38879 * 119.85864 * 359.70051 * 11 10 9 22 22 C 1.38093 * 119.93617 * 0.02562 * 21 11 10 23 23 C 1.54269 * 110.07330 * 87.33590 * 5 3 2 24 24 C 1.54891 * 104.19772 * 142.91370 * 23 5 3 25 25 C 1.54885 * 102.74756 * 322.05450 * 24 23 5 26 26 C 1.53883 * 110.03200 * 204.52261 * 5 3 2 27 27 H 1.08995 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47602 * 300.00258 * 1 2 3 29 29 H 1.09005 * 109.47031 * 59.99981 * 1 2 3 30 30 H 1.00891 * 111.00397 * 173.56612 * 6 5 3 31 31 H 1.09007 * 109.46747 * 304.23744 * 7 6 5 32 32 H 1.08999 * 109.47476 * 64.23101 * 7 6 5 33 33 H 1.08005 * 119.96483 * 359.97438 * 9 8 7 34 34 H 1.08002 * 120.03727 * 180.27185 * 10 9 8 35 35 H 0.97006 * 119.99775 * 179.97438 * 16 15 13 36 36 H 1.08008 * 120.03037 * 179.97438 * 21 11 10 37 37 H 1.08001 * 119.97105 * 179.97438 * 22 21 11 38 38 H 1.08999 * 110.48603 * 24.23510 * 23 5 3 39 39 H 1.09001 * 110.48389 * 261.59053 * 23 5 3 40 40 H 1.09000 * 110.75231 * 203.74410 * 24 23 5 41 41 H 1.09002 * 110.75591 * 80.37474 * 24 23 5 42 42 H 1.09002 * 110.48090 * 156.61970 * 25 24 23 43 43 H 1.08993 * 110.48991 * 279.13289 * 25 24 23 44 44 H 1.08995 * 110.02881 * 121.38474 * 26 5 3 45 45 H 1.08998 * 110.02847 * 359.95229 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1280 0.1598 0.7745 7 6 3.7079 0.2304 2.1804 8 6 4.3848 -0.8655 2.9626 9 6 3.7756 -2.1006 3.0887 10 6 4.3959 -3.1087 3.8001 11 6 5.6273 -2.8775 4.3993 12 8 6.2365 -3.8644 5.1046 13 6 7.4744 -3.6072 5.5732 14 1 7.9039 -2.6237 5.4526 15 6 8.1959 -4.6055 6.2099 16 7 9.4038 -4.3547 6.6667 17 14 7.4527 -6.3065 6.4190 18 1 7.8016 -7.1468 5.2454 19 1 7.9899 -6.9331 7.6536 20 1 5.9759 -6.1920 6.5244 21 6 6.2338 -1.6343 4.2755 22 6 5.6111 -0.6320 3.5581 23 6 4.0991 1.2350 -1.4466 24 6 5.3055 2.2064 -1.4342 25 6 4.8184 3.3443 -0.5031 26 6 4.0237 2.6160 0.6005 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 5.1338 0.1372 0.6984 31 1 3.9879 1.1989 2.5951 32 1 2.6267 0.1072 2.2433 33 1 2.8155 -2.2782 2.6269 34 1 3.9217 -4.0745 3.8945 35 1 9.9084 -5.0531 7.1125 36 1 7.1912 -1.4512 4.7407 37 1 6.0820 0.3351 3.4619 38 1 3.3366 1.5826 -2.1436 39 1 4.4236 0.2272 -1.7060 40 1 5.5059 2.5862 -2.4360 41 1 6.1889 1.7200 -1.0204 42 1 5.6677 3.8758 -0.0739 43 1 4.1739 4.0338 -1.0482 44 1 4.6623 2.4394 1.4659 45 1 3.1571 3.2102 0.8905 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767508769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:01 Heat of formation + Delta-G solvation = -87.282225 kcal Electronic energy + Delta-G solvation = -26772.309725 eV Core-core repulsion = 22948.460590 eV Total energy + Delta-G solvation = -3823.849134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13320 -39.26866 -38.60748 -36.96882 -36.43309 -34.22317 -32.40058 -30.44049 -30.20370 -29.14240 -28.25573 -27.17495 -25.49792 -23.90694 -22.90252 -22.06909 -21.12801 -20.33461 -19.67957 -17.92466 -17.78805 -17.36228 -16.90592 -16.53535 -15.87550 -15.50077 -15.03315 -14.65625 -14.43851 -14.05094 -13.93187 -13.85310 -13.76996 -13.38302 -13.35067 -12.85872 -12.67675 -12.45962 -12.37599 -12.17819 -12.02641 -11.67104 -11.57429 -11.42282 -11.37522 -11.23012 -10.96973 -10.83639 -10.76374 -10.70710 -10.63204 -10.51405 -10.16518 -9.40441 -8.89430 -8.56380 -8.26399 -7.34418 -6.43728 -4.10413 1.98147 2.11953 2.16353 2.56780 3.21015 3.24899 3.39444 3.87829 4.16888 4.22272 4.26657 4.52368 4.56776 4.84923 4.88331 4.93256 4.99217 5.03695 5.06808 5.08825 5.11822 5.22018 5.28081 5.33953 5.38142 5.56276 5.59874 5.62587 5.69525 5.74770 5.77274 5.83582 5.90790 6.00219 6.11446 6.22976 6.32826 6.56307 6.74367 6.79901 7.02677 7.19997 7.24886 7.32428 7.59858 7.63059 7.78009 8.01893 8.91642 9.54079 10.63860 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020328 B = 0.002783 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.054666 B =10057.885776 C =10939.238804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.333 6.333 3 C 0.480 3.520 4 O -0.514 6.514 5 C 0.121 3.879 6 N -0.658 5.658 7 C 0.109 3.891 8 C -0.177 4.177 9 C -0.050 4.050 10 C -0.194 4.194 11 C 0.163 3.837 12 O -0.217 6.217 13 C -0.390 4.390 14 H 0.106 0.894 15 C 0.064 3.936 16 N -0.879 5.879 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.259 1.259 21 C -0.222 4.222 22 C -0.066 4.066 23 C -0.109 4.109 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.153 4.153 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.354 0.646 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.280 0.720 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.423 11.915 -15.218 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.248 6.248 3 C 0.323 3.677 4 O -0.402 6.402 5 C 0.028 3.972 6 N -0.292 5.292 7 C -0.019 4.019 8 C -0.179 4.179 9 C -0.069 4.069 10 C -0.213 4.213 11 C 0.110 3.890 12 O -0.122 6.122 13 C -0.465 4.465 14 H 0.124 0.876 15 C -0.140 4.140 16 N -0.517 5.517 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.183 1.183 21 C -0.241 4.241 22 C -0.085 4.085 23 C -0.147 4.147 24 C -0.163 4.163 25 C -0.159 4.159 26 C -0.192 4.192 27 H 0.120 0.880 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.175 0.825 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.090 0.910 36 H 0.150 0.850 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.035 11.431 -15.199 23.056 hybrid contribution 0.234 0.131 0.580 0.639 sum -12.801 11.562 -14.620 22.611 Atomic orbital electron populations 1.23297 0.77159 1.03770 1.02165 1.86689 1.22414 1.32641 1.83043 1.23557 0.91452 0.81323 0.71378 1.90642 1.66728 1.36676 1.46106 1.21458 0.87018 0.91675 0.97088 1.60769 1.16365 1.41240 1.10843 1.20778 0.99341 0.95771 0.85973 1.19082 0.97413 0.95672 1.05686 1.20486 0.98424 0.91792 0.96214 1.20227 0.95918 1.00262 1.04935 1.19152 0.91900 0.88062 0.89843 1.83578 1.30681 1.37268 1.60637 1.20768 0.88350 1.00694 1.36735 0.87630 1.24469 0.94614 0.99414 0.95475 1.69646 1.09917 1.35024 1.37140 0.86180 0.80551 0.82334 0.77841 1.19840 1.20797 1.18340 1.21225 1.02969 0.93655 1.06259 1.20633 0.94002 0.97721 0.96154 1.22431 0.98048 1.01798 0.92403 1.22554 0.97574 0.96000 1.00219 1.22321 0.99502 0.97666 0.96363 1.22959 1.01627 0.95420 0.99173 0.88001 0.92085 0.92210 0.82484 0.94537 0.91157 0.86744 0.86548 0.91032 0.85004 0.87639 0.90820 0.88925 0.90794 0.90696 0.91131 0.91258 0.90193 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.33 -4.00 9.78 -39.27 -0.38 -4.38 16 3 C 0.48 5.95 5.58 36.00 0.20 6.15 16 4 O -0.51 -7.25 15.30 -18.75 -0.29 -7.53 16 5 C 0.12 1.28 0.83 -131.63 -0.11 1.17 16 6 N -0.66 -7.67 5.83 -101.25 -0.59 -8.26 16 7 C 0.11 1.42 5.18 -4.98 -0.03 1.39 16 8 C -0.18 -2.81 5.35 -104.58 -0.56 -3.37 16 9 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 10 C -0.19 -3.79 9.99 -39.39 -0.39 -4.18 16 11 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 12 O -0.22 -5.66 8.59 0.04 0.00 -5.66 16 13 C -0.39 -10.87 9.95 30.89 0.31 -10.56 16 14 H 0.11 3.00 5.43 -52.49 -0.29 2.71 16 15 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 16 N -0.88 -25.20 13.96 55.48 0.77 -24.43 16 17 Si 0.91 21.51 28.62 -169.99 -4.86 16.65 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 21 C -0.22 -4.64 9.17 -39.40 -0.36 -5.00 16 22 C -0.07 -1.13 9.69 -39.61 -0.38 -1.52 16 23 C -0.11 -0.96 5.97 -25.07 -0.15 -1.11 16 24 C -0.13 -0.93 6.91 -24.74 -0.17 -1.10 16 25 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 26 C -0.15 -1.50 5.43 -25.61 -0.14 -1.64 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.35 3.95 8.63 -39.30 -0.34 3.61 16 31 H 0.04 0.45 6.08 -51.92 -0.32 0.13 16 32 H 0.07 0.95 6.92 -51.93 -0.36 0.59 16 33 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 34 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.13 2.91 5.63 -52.48 -0.30 2.62 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.07 0.64 7.85 -51.93 -0.41 0.23 16 39 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.78 6.31 -51.93 -0.33 0.45 16 45 H 0.08 0.95 6.70 -51.93 -0.35 0.60 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -30.44 367.72 -7.90 -38.33 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.46 Total: 5.44 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -1.63 Total: -15.70 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.18 Total: -32.69 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.67 Total: -17.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.86 Total: 16.65 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.44 -7.90 -38.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767508769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.950 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds