Wall clock time and date at job start Tue Mar 31 2020 12:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 117.00027 * 2 1 4 4 O 1.20824 * 119.99847 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99750 * 179.97438 * 3 2 1 6 6 N 1.46896 * 110.02316 * 325.91344 * 5 3 2 7 7 C 1.46902 * 111.00161 * 297.52904 * 6 5 3 8 8 C 1.50694 * 109.47239 * 184.24051 * 7 6 5 9 9 C 1.38300 * 119.92949 * 269.72224 * 8 7 6 10 10 C 1.38101 * 120.06927 * 179.72592 * 9 8 7 11 11 C 1.38881 * 119.92975 * 0.57184 * 10 9 8 12 12 O 1.35745 * 120.06874 * 179.68455 * 11 10 9 13 13 C 1.34840 * 116.99894 * 175.05853 * 12 11 10 14 14 H 1.07994 * 119.99779 * 5.07977 * 13 12 11 15 15 C 1.38653 * 119.99801 * 185.08381 * 13 12 11 16 16 N 1.31553 * 119.99800 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99994 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46915 * 90.00748 * 17 15 13 19 19 H 1.48503 * 109.46917 * 210.00314 * 17 15 13 20 20 H 1.48493 * 109.47257 * 330.00255 * 17 15 13 21 21 C 1.38879 * 119.85864 * 359.70051 * 11 10 9 22 22 C 1.38093 * 119.93617 * 0.02562 * 21 11 10 23 23 C 1.54269 * 110.07330 * 87.33590 * 5 3 2 24 24 C 1.54891 * 104.19772 * 142.91370 * 23 5 3 25 25 C 1.54885 * 102.74756 * 322.05450 * 24 23 5 26 26 C 1.53883 * 110.03200 * 204.52261 * 5 3 2 27 27 H 1.08995 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47602 * 300.00258 * 1 2 3 29 29 H 1.09005 * 109.47031 * 59.99981 * 1 2 3 30 30 H 1.00891 * 111.00397 * 173.56612 * 6 5 3 31 31 H 1.09007 * 109.46747 * 304.23744 * 7 6 5 32 32 H 1.08999 * 109.47476 * 64.23101 * 7 6 5 33 33 H 1.08005 * 119.96483 * 359.97438 * 9 8 7 34 34 H 1.08002 * 120.03727 * 180.27185 * 10 9 8 35 35 H 0.97006 * 119.99775 * 179.97438 * 16 15 13 36 36 H 1.08008 * 120.03037 * 179.97438 * 21 11 10 37 37 H 1.08001 * 119.97105 * 179.97438 * 22 21 11 38 38 H 1.08999 * 110.48603 * 24.23510 * 23 5 3 39 39 H 1.09001 * 110.48389 * 261.59053 * 23 5 3 40 40 H 1.09000 * 110.75231 * 203.74410 * 24 23 5 41 41 H 1.09002 * 110.75591 * 80.37474 * 24 23 5 42 42 H 1.09002 * 110.48090 * 156.61970 * 25 24 23 43 43 H 1.08993 * 110.48991 * 279.13289 * 25 24 23 44 44 H 1.08995 * 110.02881 * 121.38474 * 26 5 3 45 45 H 1.08998 * 110.02847 * 359.95229 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1280 0.1598 0.7745 7 6 3.7079 0.2304 2.1804 8 6 4.3848 -0.8655 2.9626 9 6 3.7756 -2.1006 3.0887 10 6 4.3959 -3.1087 3.8001 11 6 5.6273 -2.8775 4.3993 12 8 6.2365 -3.8644 5.1046 13 6 7.4744 -3.6072 5.5732 14 1 7.9039 -2.6237 5.4526 15 6 8.1959 -4.6055 6.2099 16 7 9.4038 -4.3547 6.6667 17 14 7.4527 -6.3065 6.4190 18 1 7.8016 -7.1468 5.2454 19 1 7.9899 -6.9331 7.6536 20 1 5.9759 -6.1920 6.5244 21 6 6.2338 -1.6343 4.2755 22 6 5.6111 -0.6320 3.5581 23 6 4.0991 1.2350 -1.4466 24 6 5.3055 2.2064 -1.4342 25 6 4.8184 3.3443 -0.5031 26 6 4.0237 2.6160 0.6005 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 5.1338 0.1372 0.6984 31 1 3.9879 1.1989 2.5951 32 1 2.6267 0.1072 2.2433 33 1 2.8155 -2.2782 2.6269 34 1 3.9217 -4.0745 3.8945 35 1 9.9084 -5.0531 7.1125 36 1 7.1912 -1.4512 4.7407 37 1 6.0820 0.3351 3.4619 38 1 3.3366 1.5826 -2.1436 39 1 4.4236 0.2272 -1.7060 40 1 5.5059 2.5862 -2.4360 41 1 6.1889 1.7200 -1.0204 42 1 5.6677 3.8758 -0.0739 43 1 4.1739 4.0338 -1.0482 44 1 4.6623 2.4394 1.4659 45 1 3.1571 3.2102 0.8905 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767508769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:00 Heat of formation + Delta-G solvation = -105.193851 kcal Electronic energy + Delta-G solvation = -26773.086431 eV Core-core repulsion = 22948.460590 eV Total energy + Delta-G solvation = -3824.625841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.03024 -40.87757 -39.53609 -38.46683 -37.40969 -35.27106 -34.38983 -31.83624 -31.54823 -29.91523 -29.19010 -28.09681 -27.23981 -25.22217 -23.76985 -23.59133 -22.09952 -21.51026 -20.53720 -19.80500 -19.09932 -18.71373 -17.81905 -17.45733 -16.79134 -16.66847 -16.37984 -16.05216 -15.70014 -15.54045 -15.30549 -15.14689 -14.73717 -14.59186 -14.33803 -14.26073 -14.08368 -13.96290 -13.60389 -13.22321 -13.01294 -12.94462 -12.58103 -12.52648 -12.40886 -12.29507 -12.11929 -12.02989 -11.96424 -11.85126 -11.72793 -11.52616 -11.38128 -11.24879 -10.89073 -9.78290 -9.51727 -8.97746 -8.49006 -6.21336 0.59703 0.62214 1.07179 1.32771 1.36577 1.53104 1.75915 2.29165 2.70607 2.96145 3.13998 3.24948 3.44040 3.53550 3.79301 3.98452 4.02226 4.18079 4.20981 4.29335 4.31945 4.33257 4.36967 4.40253 4.45319 4.60193 4.66477 4.70676 4.71658 4.80616 4.86893 5.00343 5.00938 5.02895 5.16747 5.20058 5.28151 5.35982 5.38221 5.41023 5.59076 5.76331 5.81470 5.85748 5.92482 6.26054 6.32336 6.72608 6.85742 7.60650 8.62539 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020328 B = 0.002783 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.054666 B =10057.885776 C =10939.238804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.344 6.344 3 C 0.477 3.523 4 O -0.537 6.537 5 C 0.122 3.878 6 N -0.659 5.659 7 C 0.115 3.885 8 C -0.149 4.149 9 C -0.046 4.046 10 C -0.193 4.193 11 C 0.123 3.877 12 O -0.246 6.246 13 C -0.398 4.398 14 H 0.082 0.918 15 C 0.010 3.990 16 N -0.924 5.924 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.268 1.268 20 H -0.263 1.263 21 C -0.236 4.236 22 C -0.062 4.062 23 C -0.107 4.107 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.151 4.151 27 H 0.126 0.874 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.359 0.641 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.146 0.854 34 H 0.127 0.873 35 H 0.284 0.716 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.208 12.512 -17.151 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.259 6.259 3 C 0.321 3.679 4 O -0.426 6.426 5 C 0.029 3.971 6 N -0.294 5.294 7 C -0.013 4.013 8 C -0.150 4.150 9 C -0.064 4.064 10 C -0.212 4.212 11 C 0.074 3.926 12 O -0.153 6.153 13 C -0.475 4.475 14 H 0.100 0.900 15 C -0.188 4.188 16 N -0.564 5.564 17 Si 0.792 3.208 18 H -0.191 1.191 19 H -0.193 1.193 20 H -0.187 1.187 21 C -0.255 4.255 22 C -0.080 4.080 23 C -0.145 4.145 24 C -0.158 4.158 25 C -0.156 4.156 26 C -0.191 4.191 27 H 0.145 0.855 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.181 0.819 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.154 0.846 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.846 12.051 -17.163 25.695 hybrid contribution 0.542 0.210 0.965 1.127 sum -14.304 12.262 -16.198 24.846 Atomic orbital electron populations 1.23545 0.75645 1.05488 1.02310 1.86669 1.24051 1.32437 1.82754 1.23897 0.92103 0.81146 0.70738 1.90633 1.67359 1.37369 1.47253 1.21556 0.86008 0.91514 0.98027 1.60667 1.16790 1.42145 1.09764 1.20707 0.99041 0.95011 0.86577 1.19465 0.96158 0.96024 1.03350 1.20870 0.99327 0.91214 0.95022 1.20501 0.94702 1.01631 1.04346 1.19686 0.93304 0.88321 0.91330 1.83522 1.30040 1.38685 1.63068 1.20714 0.89496 1.00067 1.37195 0.90014 1.25263 0.95038 1.03109 0.95382 1.69728 1.11288 1.36421 1.39005 0.85233 0.79296 0.77862 0.78433 1.19051 1.19311 1.18735 1.21241 1.02567 0.94423 1.07286 1.20900 0.94316 0.97968 0.94847 1.22450 0.98573 1.02402 0.91048 1.22556 0.96976 0.95284 1.00954 1.22325 0.99594 0.97801 0.95913 1.22941 1.01268 0.94954 0.99905 0.85547 0.92254 0.91827 0.81895 0.93234 0.90994 0.83622 0.85542 0.90600 0.87353 0.84624 0.90819 0.88696 0.89346 0.90178 0.90058 0.91370 0.89899 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.56 113.37 1.20 1.56 16 2 O -0.34 -7.40 9.78 -51.46 -0.50 -7.90 16 3 C 0.48 10.81 5.58 71.23 0.40 11.21 16 4 O -0.54 -14.35 15.30 21.97 0.34 -14.01 16 5 C 0.12 2.26 0.83 3.51 0.00 2.26 16 6 N -0.66 -13.23 5.83 -474.25 -2.77 -16.00 16 7 C 0.11 2.57 5.18 85.55 0.44 3.02 16 8 C -0.15 -4.26 5.35 -19.84 -0.11 -4.37 16 9 C -0.05 -1.40 9.69 22.25 0.22 -1.19 16 10 C -0.19 -7.27 9.99 22.39 0.22 -7.05 16 11 C 0.12 5.65 6.65 22.58 0.15 5.80 16 12 O -0.25 -13.26 8.59 -22.79 -0.20 -13.46 16 13 C -0.40 -23.32 9.95 67.92 0.68 -22.65 16 14 H 0.08 4.99 5.43 -2.91 -0.02 4.98 16 15 C 0.01 0.60 5.49 84.83 0.47 1.07 16 16 N -0.92 -54.96 13.96 21.61 0.30 -54.66 16 17 Si 0.97 45.29 28.62 68.60 1.96 47.25 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.26 -12.27 7.11 99.48 0.71 -11.57 16 21 C -0.24 -10.03 9.17 22.39 0.21 -9.82 16 22 C -0.06 -2.00 9.69 22.25 0.22 -1.78 16 23 C -0.11 -1.59 5.97 31.67 0.19 -1.40 16 24 C -0.12 -1.40 6.91 31.88 0.22 -1.18 16 25 C -0.12 -1.58 6.83 31.67 0.22 -1.37 16 26 C -0.15 -2.61 5.43 31.32 0.17 -2.44 16 27 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 29 H 0.06 0.92 8.13 -2.38 -0.02 0.90 16 30 H 0.36 6.78 8.63 -89.70 -0.77 6.00 16 31 H 0.05 1.03 6.08 -2.38 -0.01 1.02 16 32 H 0.07 1.67 6.92 -2.39 -0.02 1.65 16 33 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 35 H 0.28 15.52 8.31 -92.70 -0.77 14.75 16 36 H 0.11 5.09 5.63 -2.91 -0.02 5.08 16 37 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.07 1.11 7.85 -2.39 -0.02 1.09 16 39 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16 40 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.08 1.36 6.31 -2.39 -0.02 1.34 16 45 H 0.07 1.44 6.70 -2.39 -0.02 1.42 16 Total: -1.00 -68.38 367.72 4.26 -64.12 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.24 Total: 22.98 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 4.88 Total: -28.33 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -2.46 Total: -70.65 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.36 Total: -35.37 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.96 Total: 47.25 kcal Total: -68.38 4.26 -64.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767508769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.072 kcal (2) G-P(sol) polarization free energy of solvation -68.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds