Wall clock time and date at job start Tue Mar 31 2020 12:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00221 * 2 1 4 4 H 1.08997 * 110.81375 * 26.66652 * 3 2 1 5 5 C 1.54894 * 110.75500 * 263.33278 * 3 2 1 6 6 C 1.54275 * 104.19353 * 203.74310 * 5 3 2 7 7 C 1.53872 * 106.59568 * 23.61201 * 6 5 3 8 8 C 1.54259 * 106.60335 * 359.97438 * 7 6 5 9 9 H 1.09000 * 110.48923 * 95.19899 * 8 7 6 10 10 C 1.53006 * 110.48982 * 217.71284 * 8 7 6 11 11 N 1.46496 * 109.46902 * 293.54495 * 10 8 7 12 12 C 1.34782 * 119.99898 * 179.97438 * 11 10 8 13 13 O 1.21594 * 119.99620 * 0.02562 * 12 11 10 14 14 C 1.47531 * 119.99794 * 180.27934 * 12 11 10 15 15 C 1.39663 * 120.20071 * 359.72350 * 14 12 11 16 16 C 1.37831 * 119.92328 * 179.97438 * 15 14 12 17 17 C 1.38576 * 120.31784 * 0.02562 * 16 15 14 18 18 C 1.38025 * 120.40343 * 359.95515 * 17 16 15 19 19 C 1.38829 * 120.07446 * 359.78934 * 18 17 16 20 20 O 1.35511 * 120.16456 * 180.23348 * 19 18 17 21 21 C 1.34814 * 116.99949 * 354.39983 * 20 19 18 22 22 H 1.08002 * 120.00199 * 5.06422 * 21 20 19 23 23 C 1.38706 * 119.99918 * 185.06288 * 21 20 19 24 24 N 1.31509 * 120.00069 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99603 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46897 * 90.00126 * 25 23 21 27 27 H 1.48504 * 109.46759 * 210.00056 * 25 23 21 28 28 H 1.48495 * 109.47253 * 330.00013 * 25 23 21 29 29 H 1.09000 * 109.47219 * 59.99260 * 1 2 3 30 30 H 1.08997 * 109.47575 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46484 * 299.99756 * 1 2 3 32 32 H 1.08998 * 110.48607 * 85.06540 * 5 3 2 33 33 H 1.08995 * 110.48784 * 322.42067 * 5 3 2 34 34 H 1.08994 * 110.02829 * 264.32467 * 6 5 3 35 35 H 1.09002 * 110.03075 * 142.89571 * 6 5 3 36 36 H 1.09002 * 110.03126 * 240.71196 * 7 6 5 37 37 H 1.09000 * 110.07239 * 119.31060 * 7 6 5 38 38 H 1.09001 * 109.47162 * 173.54667 * 10 8 7 39 39 H 1.09004 * 109.46552 * 53.54639 * 10 8 7 40 40 H 0.97001 * 119.99992 * 0.02562 * 11 10 8 41 41 H 1.08004 * 120.03727 * 359.95421 * 15 14 12 42 42 H 1.07995 * 119.84109 * 179.97438 * 16 15 14 43 43 H 1.08003 * 119.79448 * 179.97438 * 17 16 15 44 44 H 1.08001 * 119.96123 * 180.02562 * 18 17 16 45 45 H 0.96998 * 120.00333 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3361 2.0296 0.4573 5 6 2.3872 1.7385 -1.4386 6 6 3.4949 2.7933 -1.2382 7 6 4.1258 2.5123 0.1369 8 6 3.3791 1.2970 0.7243 9 1 3.9206 0.3759 0.5088 10 6 3.1881 1.4639 2.2332 11 7 4.4929 1.4227 2.8980 12 6 4.5711 1.5509 4.2374 13 8 3.5586 1.7003 4.8940 14 6 5.8856 1.5155 4.9063 15 6 7.0511 1.3437 4.1563 16 6 8.2762 1.3120 4.7870 17 6 8.3581 1.4495 6.1635 18 6 7.2148 1.6204 6.9176 19 6 5.9727 1.6601 6.2989 20 8 4.8495 1.8325 7.0371 21 6 4.9936 1.8432 8.3774 22 1 5.9801 1.7999 8.8149 23 6 3.8749 1.9098 9.1947 24 7 2.6736 1.9620 8.6621 25 14 4.0746 1.9238 11.0520 26 1 4.1975 3.3257 11.5260 27 1 2.8885 1.2903 11.6822 28 1 5.2965 1.1665 11.4242 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.5269 2.1796 -1.9419 33 1 2.7676 0.8888 -2.0055 34 1 3.0643 3.7945 -1.2539 35 1 4.2475 2.6978 -2.0209 36 1 4.0014 3.3772 0.7885 37 1 5.1847 2.2808 0.0223 38 1 2.5618 0.6561 2.6117 39 1 2.7076 2.4213 2.4348 40 1 5.3006 1.3039 2.3742 41 1 6.9925 1.2353 3.0833 42 1 9.1766 1.1787 4.2057 43 1 9.3225 1.4230 6.6490 44 1 7.2870 1.7273 7.9899 45 1 1.8913 2.0089 9.2336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775248402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:55 Heat of formation + Delta-G solvation = -89.825233 kcal Electronic energy + Delta-G solvation = -26653.456941 eV Core-core repulsion = 22829.497533 eV Total energy + Delta-G solvation = -3823.959408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.76935 -39.22527 -37.91309 -36.37384 -36.26230 -33.93365 -32.31760 -30.95588 -29.37385 -28.88311 -28.46281 -26.40614 -25.40168 -24.48682 -22.66806 -21.33761 -20.98337 -20.06814 -19.71140 -18.02289 -17.58577 -17.16961 -16.20419 -15.54853 -15.42277 -14.97650 -14.94091 -14.62209 -14.59474 -14.17275 -14.09410 -13.78967 -13.70916 -13.48353 -13.05830 -12.80674 -12.58246 -12.41534 -12.14157 -11.69668 -11.60709 -11.49905 -11.40757 -11.30205 -11.09850 -10.92798 -10.86634 -10.75527 -10.74624 -10.58019 -10.44288 -9.69428 -9.53497 -8.85943 -8.79265 -8.48390 -8.23513 -7.28197 -6.42091 -4.02084 1.75051 2.34481 3.13015 3.14291 3.18927 3.52183 3.77956 3.80237 3.95439 4.33788 4.45284 4.66199 4.69370 4.98094 5.08440 5.11002 5.17996 5.18771 5.20167 5.27872 5.31511 5.41303 5.43325 5.50545 5.55432 5.58627 5.68257 5.73801 5.78907 5.89244 5.92982 6.00639 6.07237 6.14572 6.16692 6.27126 6.59014 6.72042 6.93950 7.02032 7.07706 7.08758 7.26563 7.31685 7.72100 7.94656 8.18919 8.97537 9.15996 9.70506 10.71792 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.003236 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.875543 B = 8651.344924 C =10233.795184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.089 3.911 4 H 0.074 0.926 5 C -0.143 4.143 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.100 4.100 9 H 0.090 0.910 10 C 0.134 3.866 11 N -0.742 5.742 12 C 0.553 3.447 13 O -0.502 6.502 14 C -0.226 4.226 15 C -0.038 4.038 16 C -0.231 4.231 17 C -0.051 4.051 18 C -0.238 4.238 19 C 0.189 3.811 20 O -0.124 6.124 21 C -0.404 4.404 22 H 0.094 0.906 23 C 0.045 3.955 24 N -0.833 5.833 25 Si 0.940 3.060 26 H -0.272 1.272 27 H -0.276 1.276 28 H -0.266 1.266 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.391 0.609 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.131 0.869 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 -0.415 -17.805 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.030 3.970 4 H 0.092 0.908 5 C -0.181 4.181 6 C -0.159 4.159 7 C -0.159 4.159 8 C -0.119 4.119 9 H 0.109 0.891 10 C 0.010 3.990 11 N -0.398 5.398 12 C 0.343 3.657 13 O -0.376 6.376 14 C -0.231 4.231 15 C -0.057 4.057 16 C -0.250 4.250 17 C -0.070 4.070 18 C -0.258 4.258 19 C 0.130 3.870 20 O -0.022 6.022 21 C -0.480 4.480 22 H 0.111 0.889 23 C -0.163 4.163 24 N -0.464 5.464 25 Si 0.765 3.235 26 H -0.198 1.198 27 H -0.201 1.201 28 H -0.191 1.191 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.226 0.774 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.037 -0.415 -17.252 17.288 hybrid contribution 0.413 0.156 0.622 0.763 sum 1.451 -0.259 -16.630 16.695 Atomic orbital electron populations 1.22797 0.81089 1.02777 0.99978 1.87912 1.19634 1.27351 1.94853 1.23129 0.94162 0.84786 0.94901 0.90810 1.22791 0.98790 0.99309 0.97199 1.22034 0.97735 0.98786 0.97374 1.22189 0.99669 0.97838 0.96224 1.22278 0.95707 0.99771 0.94155 0.89144 1.21198 0.86122 1.01996 0.89712 1.45851 1.08543 1.77991 1.07399 1.18233 0.89451 0.76952 0.81114 1.90946 1.36347 1.46584 1.63747 1.18874 0.92828 1.19829 0.91572 1.20756 0.91688 0.95589 0.97685 1.20458 0.96632 1.13285 0.94639 1.20893 0.97164 0.95149 0.93791 1.21156 0.91916 1.11763 1.00931 1.19277 0.87249 0.90354 0.90143 1.84174 1.26446 1.72873 1.18738 1.21498 0.94873 1.53334 0.78289 0.88894 1.25380 0.94222 0.96220 1.00480 1.70126 0.97736 1.42532 1.36027 0.85733 0.78476 0.78818 0.80509 1.19769 1.20142 1.19067 0.94280 0.89679 0.93689 0.91638 0.90607 0.91639 0.91520 0.90862 0.91160 0.91576 0.91972 0.77438 0.87090 0.87303 0.87217 0.85103 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.85 101.05 1.10 1.37 16 2 O -0.38 -4.51 10.49 -35.23 -0.37 -4.88 16 3 C 0.09 0.93 2.81 -24.75 -0.07 0.86 16 4 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 5 C -0.14 -1.22 6.55 -25.07 -0.16 -1.39 16 6 C -0.12 -0.97 6.80 -25.61 -0.17 -1.14 16 7 C -0.12 -1.14 6.05 -25.62 -0.15 -1.29 16 8 C -0.10 -1.12 2.65 -88.97 -0.24 -1.35 16 9 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 10 C 0.13 2.01 4.99 -4.04 -0.02 1.99 16 11 N -0.74 -12.26 5.35 -61.35 -0.33 -12.58 16 12 C 0.55 12.42 7.76 -12.47 -0.10 12.32 16 13 O -0.50 -14.04 15.17 -16.57 -0.25 -14.29 16 14 C -0.23 -4.99 5.89 -104.81 -0.62 -5.61 16 15 C -0.04 -0.66 9.53 -39.20 -0.37 -1.04 16 16 C -0.23 -3.83 10.03 -39.61 -0.40 -4.22 16 17 C -0.05 -0.92 10.03 -39.53 -0.40 -1.31 16 18 C -0.24 -5.19 9.16 -39.44 -0.36 -5.55 16 19 C 0.19 4.77 6.66 -38.60 -0.26 4.51 16 20 O -0.12 -3.72 7.84 -21.03 -0.16 -3.88 16 21 C -0.40 -11.57 9.49 30.91 0.29 -11.27 16 22 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 23 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 24 N -0.83 -25.35 13.67 55.48 0.76 -24.60 16 25 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.41 8.12 -51.92 -0.42 -0.01 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.75 7.77 -51.93 -0.40 0.35 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.99 8.05 -51.93 -0.42 0.57 16 40 H 0.39 5.19 6.35 -40.82 -0.26 4.93 16 41 H 0.11 1.48 6.40 -52.48 -0.34 1.15 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 44 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -35.27 371.11 -8.41 -43.67 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.60 Total: 7.24 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.03 Total: -11.96 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.43 Total: -37.18 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.79 Total: -23.05 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.27 -8.41 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775248402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.150 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds