Wall clock time and date at job start Tue Mar 31 2020 12:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99923 * 2 1 4 4 H 1.09001 * 110.53984 * 332.60735 * 3 2 1 5 5 C 1.54890 * 110.48789 * 95.22169 * 3 2 1 6 6 C 1.54887 * 102.74829 * 156.61928 * 5 3 2 7 7 C 1.54267 * 104.19701 * 322.06101 * 6 5 3 8 8 C 1.53866 * 106.59813 * 23.60639 * 7 6 5 9 9 H 1.09004 * 110.03235 * 240.66719 * 8 7 6 10 10 C 1.52998 * 110.03257 * 119.28895 * 8 7 6 11 11 N 1.46501 * 109.47229 * 66.45131 * 10 8 7 12 12 C 1.34774 * 120.00183 * 180.02562 * 11 10 8 13 13 O 1.21595 * 120.00178 * 359.97438 * 12 11 10 14 14 C 1.47539 * 120.00198 * 180.02562 * 12 11 10 15 15 C 1.39665 * 120.19526 * 0.27475 * 14 12 11 16 16 C 1.37832 * 119.91787 * 180.30039 * 15 14 12 17 17 C 1.38569 * 120.32122 * 359.71828 * 16 15 14 18 18 C 1.38024 * 120.40450 * 359.97438 * 17 16 15 19 19 C 1.38836 * 120.07032 * 0.02562 * 18 17 16 20 20 O 1.35521 * 120.15968 * 180.02562 * 19 18 17 21 21 C 1.34820 * 116.99875 * 5.59613 * 20 19 18 22 22 H 1.07992 * 120.00474 * 354.93764 * 21 20 19 23 23 C 1.38702 * 119.99397 * 174.93394 * 21 20 19 24 24 N 1.31515 * 120.00161 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99540 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47133 * 270.00224 * 25 23 21 27 27 H 1.48501 * 109.47085 * 30.00279 * 25 23 21 28 28 H 1.48501 * 109.46653 * 150.00270 * 25 23 21 29 29 H 1.09002 * 109.46644 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47079 * 300.00259 * 1 2 3 31 31 H 1.09001 * 109.46674 * 60.00560 * 1 2 3 32 32 H 1.09000 * 110.75796 * 38.30736 * 5 3 2 33 33 H 1.08997 * 110.75728 * 274.93189 * 5 3 2 34 34 H 1.08994 * 110.48804 * 203.37641 * 6 5 3 35 35 H 1.09008 * 110.48734 * 80.73536 * 6 5 3 36 36 H 1.09000 * 110.02709 * 264.32444 * 7 6 5 37 37 H 1.08997 * 110.07412 * 142.91757 * 7 6 5 38 38 H 1.09003 * 109.46906 * 306.45517 * 10 8 7 39 39 H 1.08999 * 109.47493 * 186.45390 * 10 8 7 40 40 H 0.96997 * 119.99883 * 0.02562 * 11 10 8 41 41 H 1.08002 * 120.04230 * 0.02562 * 15 14 12 42 42 H 1.07997 * 119.84103 * 179.74469 * 16 15 14 43 43 H 1.07998 * 119.80023 * 180.02562 * 17 16 15 44 44 H 1.08005 * 119.96705 * 180.02562 * 18 17 16 45 45 H 0.97009 * 119.99627 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3378 2.0234 -0.4696 5 6 2.3514 1.7470 1.4449 6 6 3.4600 2.8062 1.2259 7 6 4.2949 2.2439 0.0569 8 6 3.3732 1.2897 -0.7225 9 1 3.7882 0.2817 -0.7164 10 6 3.2087 1.7796 -2.1625 11 7 4.4917 1.6781 -2.8624 12 6 4.5875 2.0569 -4.1523 13 8 3.6089 2.4825 -4.7353 14 6 5.8794 1.9542 -4.8573 15 6 7.0044 1.4597 -4.1937 16 6 8.2100 1.3720 -4.8560 17 6 8.3109 1.7669 -6.1804 18 6 7.2062 2.2517 -6.8509 19 6 5.9837 2.3471 -6.1998 20 8 4.8977 2.8223 -6.8566 21 6 5.0413 3.0768 -8.1727 22 1 6.0103 2.9790 -8.6391 23 6 3.9441 3.4643 -8.9277 24 7 2.7641 3.5839 -8.3596 25 14 4.1432 3.8176 -10.7513 26 1 4.4703 5.2531 -10.9445 27 1 5.2406 2.9815 -11.3006 28 1 2.8767 3.4990 -11.4582 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.7298 0.9064 2.0266 33 1 1.4818 2.1923 1.9282 34 1 4.0746 2.9058 2.1205 35 1 3.0217 3.7666 0.9542 36 1 5.1568 1.6989 0.4420 37 1 4.6258 3.0556 -0.5910 38 1 2.8788 2.8185 -2.1574 39 1 2.4668 1.1653 -2.6728 40 1 5.2722 1.3383 -2.3975 41 1 6.9309 1.1505 -3.1615 42 1 9.0801 0.9932 -4.3405 43 1 9.2596 1.6942 -6.6914 44 1 7.2928 2.5572 -7.8833 45 1 1.9969 3.8552 -8.8877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775248404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:04 Heat of formation + Delta-G solvation = -89.541028 kcal Electronic energy + Delta-G solvation = -26662.996377 eV Core-core repulsion = 22839.049294 eV Total energy + Delta-G solvation = -3823.947083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.80421 -39.24195 -37.92508 -36.38491 -36.26487 -33.90590 -32.32072 -30.94613 -29.36496 -28.88714 -28.43599 -26.45726 -25.40310 -24.46480 -22.68298 -21.37232 -21.06262 -19.95581 -19.71972 -18.02633 -17.60324 -17.16034 -16.21547 -15.60063 -15.38350 -15.14251 -14.90968 -14.61078 -14.47251 -14.18601 -14.10252 -13.83038 -13.71687 -13.45355 -13.05270 -12.72380 -12.59644 -12.42277 -12.16154 -11.70050 -11.63637 -11.51756 -11.31557 -11.30159 -11.10339 -10.93823 -10.87154 -10.80782 -10.75181 -10.56245 -10.44569 -9.71139 -9.54221 -8.86369 -8.80364 -8.49956 -8.24043 -7.28648 -6.42609 -4.02579 1.74513 2.34141 3.12740 3.13935 3.18606 3.49027 3.79225 3.80802 3.95019 4.36171 4.43900 4.66722 4.70124 4.99491 5.08184 5.11075 5.15873 5.18553 5.19765 5.27414 5.35147 5.43562 5.45613 5.49376 5.54482 5.57692 5.67767 5.72871 5.81455 5.86437 5.95000 6.01461 6.07609 6.14135 6.14752 6.25555 6.58604 6.71537 6.93505 7.00663 7.07318 7.08378 7.26140 7.31276 7.71692 7.94149 8.17754 8.97076 9.14792 9.69934 10.71260 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.003212 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.634539 B = 8714.446806 C =10165.762057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.089 3.911 4 H 0.073 0.927 5 C -0.143 4.143 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.102 4.102 9 H 0.090 0.910 10 C 0.133 3.867 11 N -0.742 5.742 12 C 0.553 3.447 13 O -0.502 6.502 14 C -0.226 4.226 15 C -0.038 4.038 16 C -0.231 4.231 17 C -0.051 4.051 18 C -0.238 4.238 19 C 0.190 3.810 20 O -0.124 6.124 21 C -0.404 4.404 22 H 0.094 0.906 23 C 0.045 3.955 24 N -0.833 5.833 25 Si 0.940 3.060 26 H -0.272 1.272 27 H -0.266 1.266 28 H -0.276 1.276 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.392 0.608 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.131 0.869 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 -4.231 17.072 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.031 3.969 4 H 0.091 0.909 5 C -0.181 4.181 6 C -0.160 4.160 7 C -0.160 4.160 8 C -0.121 4.121 9 H 0.108 0.892 10 C 0.009 3.991 11 N -0.398 5.398 12 C 0.343 3.657 13 O -0.376 6.376 14 C -0.231 4.231 15 C -0.057 4.057 16 C -0.250 4.250 17 C -0.070 4.070 18 C -0.258 4.258 19 C 0.130 3.870 20 O -0.022 6.022 21 C -0.480 4.480 22 H 0.111 0.889 23 C -0.163 4.163 24 N -0.464 5.464 25 Si 0.765 3.235 26 H -0.198 1.198 27 H -0.191 1.191 28 H -0.201 1.201 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.226 0.774 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.859 -3.935 16.596 17.078 hybrid contribution 0.382 0.169 -0.671 0.791 sum 1.241 -3.766 15.925 16.411 Atomic orbital electron populations 1.22791 0.81123 1.02711 1.00020 1.87914 1.19619 1.27523 1.94910 1.23007 0.94210 0.84682 0.95029 0.90934 1.22944 0.98925 0.99236 0.96991 1.22267 0.96992 0.98324 0.98429 1.22219 0.97862 0.98977 0.96945 1.22054 0.95044 1.00893 0.94066 0.89183 1.21254 0.86714 1.01056 0.90089 1.45861 1.11820 1.69518 1.12605 1.18235 0.88832 0.77922 0.80744 1.90946 1.37808 1.43412 1.65468 1.18866 0.94138 1.16269 0.93853 1.20760 0.91926 0.95336 0.97689 1.20459 0.97330 1.11384 0.95833 1.20891 0.97154 0.94809 0.94129 1.21159 0.92779 1.10023 1.01809 1.19280 0.87647 0.89464 0.90621 1.84179 1.29710 1.65946 1.22403 1.21498 0.96884 1.48038 0.81569 0.88888 1.25381 0.94240 0.96382 1.00298 1.70134 0.99385 1.40433 1.36484 0.85734 0.78360 0.79055 0.80389 1.19762 1.19065 1.20141 0.89725 0.94238 0.93719 0.90487 0.91538 0.91323 0.91349 0.91302 0.90638 0.91858 0.91798 0.77380 0.87070 0.87293 0.87211 0.85098 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.37 16 2 O -0.38 -4.47 10.41 -35.23 -0.37 -4.83 16 3 C 0.09 0.94 2.88 -25.07 -0.07 0.87 16 4 H 0.07 0.77 7.53 -51.93 -0.39 0.38 16 5 C -0.14 -1.24 6.62 -24.74 -0.16 -1.40 16 6 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 7 C -0.12 -1.16 6.13 -25.62 -0.16 -1.32 16 8 C -0.10 -1.14 2.74 -89.51 -0.24 -1.38 16 9 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 10 C 0.13 1.98 4.70 -4.04 -0.02 1.96 16 11 N -0.74 -12.20 5.24 -61.35 -0.32 -12.53 16 12 C 0.55 12.38 7.76 -12.47 -0.10 12.28 16 13 O -0.50 -13.99 15.17 -16.57 -0.25 -14.25 16 14 C -0.23 -4.99 5.89 -104.81 -0.62 -5.60 16 15 C -0.04 -0.66 9.54 -39.20 -0.37 -1.04 16 16 C -0.23 -3.82 10.03 -39.61 -0.40 -4.22 16 17 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 18 C -0.24 -5.18 9.16 -39.44 -0.36 -5.54 16 19 C 0.19 4.77 6.66 -38.60 -0.26 4.51 16 20 O -0.12 -3.71 7.84 -21.07 -0.17 -3.88 16 21 C -0.40 -11.55 9.49 30.90 0.29 -11.26 16 22 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 23 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 24 N -0.83 -25.32 13.67 55.48 0.76 -24.56 16 25 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 28 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.40 8.11 -51.93 -0.42 -0.02 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.80 7.58 -51.93 -0.39 0.40 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.39 5.19 6.34 -40.82 -0.26 4.93 16 41 H 0.11 1.48 6.40 -52.49 -0.34 1.15 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.13 2.80 5.64 -52.48 -0.30 2.51 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 370.57 15.07 5.58 5.58 Total: -1.00 -35.16 370.57 -8.39 -43.56 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.57 Total: 7.36 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.03 Total: -12.11 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.44 Total: -37.09 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.78 Total: -22.96 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.16 -8.39 -43.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775248404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.986 kcal (2) G-P(sol) polarization free energy of solvation -35.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds