Wall clock time and date at job start Tue Mar 31 2020 12:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99923 * 2 1 4 4 H 1.09001 * 110.53984 * 332.60735 * 3 2 1 5 5 C 1.54890 * 110.48789 * 95.22169 * 3 2 1 6 6 C 1.54887 * 102.74829 * 156.61928 * 5 3 2 7 7 C 1.54267 * 104.19701 * 322.06101 * 6 5 3 8 8 C 1.53866 * 106.59813 * 23.60639 * 7 6 5 9 9 H 1.09004 * 110.03235 * 240.66719 * 8 7 6 10 10 C 1.52998 * 110.03257 * 119.28895 * 8 7 6 11 11 N 1.46501 * 109.47229 * 66.45131 * 10 8 7 12 12 C 1.34774 * 120.00183 * 180.02562 * 11 10 8 13 13 O 1.21595 * 120.00178 * 359.97438 * 12 11 10 14 14 C 1.47539 * 120.00198 * 180.02562 * 12 11 10 15 15 C 1.39665 * 120.19526 * 0.27475 * 14 12 11 16 16 C 1.37832 * 119.91787 * 180.30039 * 15 14 12 17 17 C 1.38569 * 120.32122 * 359.71828 * 16 15 14 18 18 C 1.38024 * 120.40450 * 359.97438 * 17 16 15 19 19 C 1.38836 * 120.07032 * 0.02562 * 18 17 16 20 20 O 1.35521 * 120.15968 * 180.02562 * 19 18 17 21 21 C 1.34820 * 116.99875 * 5.59613 * 20 19 18 22 22 H 1.07992 * 120.00474 * 354.93764 * 21 20 19 23 23 C 1.38702 * 119.99397 * 174.93394 * 21 20 19 24 24 N 1.31515 * 120.00161 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99540 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47133 * 270.00224 * 25 23 21 27 27 H 1.48501 * 109.47085 * 30.00279 * 25 23 21 28 28 H 1.48501 * 109.46653 * 150.00270 * 25 23 21 29 29 H 1.09002 * 109.46644 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47079 * 300.00259 * 1 2 3 31 31 H 1.09001 * 109.46674 * 60.00560 * 1 2 3 32 32 H 1.09000 * 110.75796 * 38.30736 * 5 3 2 33 33 H 1.08997 * 110.75728 * 274.93189 * 5 3 2 34 34 H 1.08994 * 110.48804 * 203.37641 * 6 5 3 35 35 H 1.09008 * 110.48734 * 80.73536 * 6 5 3 36 36 H 1.09000 * 110.02709 * 264.32444 * 7 6 5 37 37 H 1.08997 * 110.07412 * 142.91757 * 7 6 5 38 38 H 1.09003 * 109.46906 * 306.45517 * 10 8 7 39 39 H 1.08999 * 109.47493 * 186.45390 * 10 8 7 40 40 H 0.96997 * 119.99883 * 0.02562 * 11 10 8 41 41 H 1.08002 * 120.04230 * 0.02562 * 15 14 12 42 42 H 1.07997 * 119.84103 * 179.74469 * 16 15 14 43 43 H 1.07998 * 119.80023 * 180.02562 * 17 16 15 44 44 H 1.08005 * 119.96705 * 180.02562 * 18 17 16 45 45 H 0.97009 * 119.99627 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3378 2.0234 -0.4696 5 6 2.3514 1.7470 1.4449 6 6 3.4600 2.8062 1.2259 7 6 4.2949 2.2439 0.0569 8 6 3.3732 1.2897 -0.7225 9 1 3.7882 0.2817 -0.7164 10 6 3.2087 1.7796 -2.1625 11 7 4.4917 1.6781 -2.8624 12 6 4.5875 2.0569 -4.1523 13 8 3.6089 2.4825 -4.7353 14 6 5.8794 1.9542 -4.8573 15 6 7.0044 1.4597 -4.1937 16 6 8.2100 1.3720 -4.8560 17 6 8.3109 1.7669 -6.1804 18 6 7.2062 2.2517 -6.8509 19 6 5.9837 2.3471 -6.1998 20 8 4.8977 2.8223 -6.8566 21 6 5.0413 3.0768 -8.1727 22 1 6.0103 2.9790 -8.6391 23 6 3.9441 3.4643 -8.9277 24 7 2.7641 3.5839 -8.3596 25 14 4.1432 3.8176 -10.7513 26 1 4.4703 5.2531 -10.9445 27 1 5.2406 2.9815 -11.3006 28 1 2.8767 3.4990 -11.4582 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.7298 0.9064 2.0266 33 1 1.4818 2.1923 1.9282 34 1 4.0746 2.9058 2.1205 35 1 3.0217 3.7666 0.9542 36 1 5.1568 1.6989 0.4420 37 1 4.6258 3.0556 -0.5910 38 1 2.8788 2.8185 -2.1574 39 1 2.4668 1.1653 -2.6728 40 1 5.2722 1.3383 -2.3975 41 1 6.9309 1.1505 -3.1615 42 1 9.0801 0.9932 -4.3405 43 1 9.2596 1.6942 -6.6914 44 1 7.2928 2.5572 -7.8833 45 1 1.9969 3.8552 -8.8877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775248404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:03 Heat of formation + Delta-G solvation = -113.807608 kcal Electronic energy + Delta-G solvation = -26664.048655 eV Core-core repulsion = 22839.049294 eV Total energy + Delta-G solvation = -3824.999361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34307 -40.42060 -39.55054 -38.02400 -37.30130 -35.35604 -34.32387 -32.44024 -30.60914 -30.49430 -29.20412 -27.45512 -27.20999 -25.69980 -24.18843 -22.99509 -22.01436 -21.23405 -20.88327 -19.84506 -19.25858 -18.06950 -17.88439 -16.94960 -16.53155 -16.38305 -16.24304 -16.00956 -15.78848 -15.73883 -15.52844 -15.28883 -15.24557 -14.60563 -14.38720 -14.24675 -13.96474 -13.67073 -13.54890 -13.16879 -12.98554 -12.69280 -12.59082 -12.52152 -12.32432 -12.27345 -12.12568 -12.01384 -11.87843 -11.59666 -11.43456 -11.35951 -10.83588 -10.70501 -10.43282 -10.12251 -9.77970 -9.03369 -8.44761 -6.15919 0.12638 0.73284 1.31899 1.43660 1.51242 2.09580 2.15669 2.22254 2.83188 2.87828 3.22758 3.46969 3.50246 3.59482 3.81616 3.99745 4.08579 4.22836 4.26720 4.29487 4.30236 4.41529 4.48434 4.50648 4.53536 4.61664 4.63470 4.69370 4.82434 4.84507 4.90700 4.98658 5.02802 5.07618 5.13971 5.16120 5.20242 5.24457 5.42828 5.48748 5.53548 5.61535 5.70080 5.96057 6.17621 6.26343 6.69516 6.94504 7.47876 7.80634 8.75901 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.003212 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.634539 B = 8714.446806 C =10165.762057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.083 3.917 4 H 0.064 0.936 5 C -0.134 4.134 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.091 4.091 9 H 0.094 0.906 10 C 0.135 3.865 11 N -0.714 5.714 12 C 0.546 3.454 13 O -0.571 6.571 14 C -0.246 4.246 15 C -0.029 4.029 16 C -0.200 4.200 17 C -0.040 4.040 18 C -0.258 4.258 19 C 0.149 3.851 20 O -0.190 6.190 21 C -0.428 4.428 22 H 0.107 0.893 23 C -0.022 4.022 24 N -0.906 5.906 25 Si 1.023 2.977 26 H -0.261 1.261 27 H -0.248 1.248 28 H -0.273 1.273 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.038 0.962 40 H 0.412 0.588 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.154 0.846 44 H 0.123 0.877 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.037 -5.684 19.598 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C 0.024 3.976 4 H 0.082 0.918 5 C -0.172 4.172 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.110 4.110 9 H 0.113 0.887 10 C 0.011 3.989 11 N -0.369 5.369 12 C 0.336 3.664 13 O -0.450 6.450 14 C -0.250 4.250 15 C -0.048 4.048 16 C -0.218 4.218 17 C -0.058 4.058 18 C -0.278 4.278 19 C 0.094 3.906 20 O -0.092 6.092 21 C -0.504 4.504 22 H 0.124 0.876 23 C -0.222 4.222 24 N -0.542 5.542 25 Si 0.841 3.159 26 H -0.186 1.186 27 H -0.171 1.171 28 H -0.197 1.197 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.250 0.750 41 H 0.178 0.822 42 H 0.183 0.817 43 H 0.172 0.828 44 H 0.141 0.859 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.963 -5.435 19.213 20.575 hybrid contribution -0.567 0.433 -1.115 1.324 sum 4.396 -5.001 18.098 19.284 Atomic orbital electron populations 1.22937 0.79982 1.03726 1.00477 1.87868 1.20976 1.28070 1.95107 1.23100 0.93618 0.84359 0.96492 0.91775 1.22887 0.99539 0.99446 0.95288 1.22277 0.96886 0.97904 0.98639 1.22221 0.98269 0.98302 0.96918 1.21998 0.96335 1.01359 0.91322 0.88737 1.21314 0.85340 0.99981 0.92298 1.45591 1.13198 1.67373 1.10738 1.18588 0.88420 0.77235 0.82130 1.90927 1.40021 1.46707 1.67392 1.19300 0.95648 1.16808 0.93276 1.21307 0.90488 0.93264 0.99706 1.21184 0.98396 1.07240 0.94989 1.21441 0.97320 0.92142 0.94883 1.21307 0.93056 1.11399 1.01990 1.20090 0.88167 0.90237 0.92117 1.84182 1.32193 1.69847 1.23022 1.22052 0.97788 1.48436 0.82154 0.87558 1.26772 0.93507 0.95934 1.05938 1.70331 1.00690 1.44356 1.38801 0.84558 0.78796 0.79436 0.73132 1.18594 1.17090 1.19749 0.88512 0.92496 0.94559 0.89973 0.90419 0.89338 0.91699 0.89052 0.91855 0.93242 0.94391 0.74999 0.82240 0.81717 0.82799 0.85911 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.85 113.37 1.23 1.67 16 2 O -0.40 -9.16 10.41 -148.98 -1.55 -10.71 16 3 C 0.08 1.70 2.88 31.67 0.09 1.79 16 4 H 0.06 1.40 7.53 -2.39 -0.02 1.38 16 5 C -0.13 -2.01 6.62 31.88 0.21 -1.80 16 6 C -0.12 -1.68 6.83 31.67 0.22 -1.46 16 7 C -0.12 -1.97 6.13 31.32 0.19 -1.78 16 8 C -0.09 -1.95 2.74 -10.07 -0.03 -1.97 16 9 H 0.09 1.97 8.07 -2.38 -0.02 1.95 16 10 C 0.13 4.17 4.70 86.38 0.41 4.58 16 11 N -0.71 -23.44 5.24 -466.26 -2.44 -25.89 16 12 C 0.55 25.53 7.76 86.70 0.67 26.20 16 13 O -0.57 -34.69 15.17 16.88 0.26 -34.44 16 14 C -0.25 -10.87 5.89 -19.99 -0.12 -10.98 16 15 C -0.03 -0.89 9.54 22.52 0.21 -0.68 16 16 C -0.20 -5.34 10.03 22.25 0.22 -5.12 16 17 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16 18 C -0.26 -11.16 9.16 22.36 0.20 -10.96 16 19 C 0.15 7.81 6.66 22.91 0.15 7.96 16 20 O -0.19 -12.29 7.84 0.77 0.01 -12.29 16 21 C -0.43 -26.29 9.49 67.93 0.64 -25.64 16 22 H 0.11 5.84 5.21 -2.91 -0.02 5.82 16 23 C -0.02 -1.35 5.49 84.85 0.47 -0.88 16 24 N -0.91 -60.02 13.67 21.62 0.30 -59.72 16 25 Si 1.02 44.71 29.55 68.60 2.03 46.74 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 27 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 0.69 8.11 -2.39 -0.02 0.67 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.22 7.58 -2.39 -0.02 1.20 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.41 9.83 6.34 -92.71 -0.59 9.25 16 41 H 0.16 3.25 6.40 -2.91 -0.02 3.24 16 42 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 43 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 44 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 45 H 0.27 16.38 8.31 -92.70 -0.77 15.61 16 Total: -1.00 -89.34 370.57 4.01 -85.33 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.42 Total: 31.06 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 5.00 Total: -20.09 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -2.15 Total: -85.61 kcal Atomic # 8 Polarization: -56.14 SS G_CDS: -1.29 Total: -57.43 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -89.34 4.01 -85.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775248404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.476 kcal (2) G-P(sol) polarization free energy of solvation -89.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds