Wall clock time and date at job start Tue Mar 31 2020 12:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99950 * 2 1 4 4 H 1.09005 * 110.01857 * 28.61472 * 3 2 1 5 5 C 1.54265 * 110.07583 * 267.19505 * 3 2 1 6 6 C 1.54889 * 104.19837 * 217.08406 * 5 3 2 7 7 C 1.54885 * 102.74760 * 37.93926 * 6 5 3 8 8 C 1.53879 * 110.03456 * 150.00204 * 3 2 1 9 9 H 1.08991 * 110.03215 * 238.66991 * 8 3 2 10 10 C 1.53005 * 110.02532 * 0.05325 * 8 3 2 11 11 N 1.46500 * 109.46567 * 185.00013 * 10 8 3 12 12 C 1.34779 * 120.00082 * 179.97438 * 11 10 8 13 13 O 1.21595 * 119.99844 * 0.02562 * 12 11 10 14 14 C 1.47535 * 120.00066 * 179.97438 * 12 11 10 15 15 C 1.39664 * 120.19893 * 359.97438 * 14 12 11 16 16 C 1.37823 * 119.92092 * 180.02562 * 15 14 12 17 17 C 1.38579 * 120.32106 * 0.02562 * 16 15 14 18 18 C 1.38023 * 120.40420 * 359.69966 * 17 16 15 19 19 C 1.38842 * 120.06801 * 0.55869 * 18 17 16 20 20 O 1.35518 * 120.15807 * 179.74471 * 19 18 17 21 21 C 1.34814 * 117.00047 * 5.59880 * 20 19 18 22 22 H 1.08003 * 120.00268 * 354.93527 * 21 20 19 23 23 C 1.38705 * 119.99833 * 174.93817 * 21 20 19 24 24 N 1.31517 * 119.99853 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99760 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46929 * 89.99926 * 25 23 21 27 27 H 1.48498 * 109.47156 * 329.99995 * 25 23 21 28 28 H 1.48497 * 109.46808 * 209.99775 * 25 23 21 29 29 H 1.08996 * 109.47304 * 59.99819 * 1 2 3 30 30 H 1.09003 * 109.46984 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47049 * 299.99332 * 1 2 3 32 32 H 1.09003 * 110.48535 * 335.75948 * 5 3 2 33 33 H 1.09000 * 110.48601 * 98.40735 * 5 3 2 34 34 H 1.08991 * 110.75686 * 156.25770 * 6 5 3 35 35 H 1.09006 * 110.75469 * 279.63177 * 6 5 3 36 36 H 1.09003 * 110.48963 * 203.38065 * 7 6 5 37 37 H 1.09000 * 110.48843 * 80.73999 * 7 6 5 38 38 H 1.08995 * 109.47445 * 65.00415 * 10 8 3 39 39 H 1.08998 * 109.47434 * 304.99247 * 10 8 3 40 40 H 0.97001 * 120.00629 * 359.97438 * 11 10 8 41 41 H 1.08002 * 120.03788 * 0.02562 * 15 14 12 42 42 H 1.07995 * 119.83928 * 180.02562 * 16 15 14 43 43 H 1.07999 * 119.79406 * 179.97438 * 17 16 15 44 44 H 1.07993 * 119.96800 * 180.30233 * 18 17 16 45 45 H 0.96994 * 119.99998 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 0.4905 5 6 2.2904 1.7603 -1.4472 6 6 3.6248 2.5406 -1.3486 7 6 4.4264 1.7168 -0.3105 8 6 3.3684 1.2778 0.7228 9 1 3.3576 1.9702 1.5645 10 6 3.6718 -0.1392 1.2140 11 7 4.9068 -0.1288 2.0019 12 6 5.3724 -1.2733 2.5403 13 8 4.7675 -2.3146 2.3717 14 6 6.6164 -1.2629 3.3333 15 6 7.3153 -0.0695 3.5283 16 6 8.4772 -0.0665 4.2697 17 6 8.9569 -1.2429 4.8232 18 6 8.2739 -2.4288 4.6437 19 6 7.1047 -2.4517 3.8953 20 8 6.4354 -3.6160 3.7136 21 6 6.8920 -4.6950 4.3806 22 1 7.8014 -4.6272 4.9592 23 6 6.1938 -5.8921 4.3236 24 7 5.0862 -5.9745 3.6192 25 14 6.8268 -7.3874 5.2472 26 1 6.2515 -7.4037 6.6161 27 1 8.3080 -7.3254 5.3335 28 1 6.4241 -8.6215 4.5262 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.4008 0.8973 -2.1037 33 1 1.4927 2.4123 -1.8033 34 1 4.1369 2.5531 -2.3106 35 1 3.4535 3.5548 -0.9877 36 1 5.1877 2.3369 0.1630 37 1 4.8818 0.8467 -0.7834 38 1 3.7928 -0.8025 0.3576 39 1 2.8482 -0.4929 1.8342 40 1 5.3896 0.7018 2.1362 41 1 6.9458 0.8498 3.0986 42 1 9.0163 0.8571 4.4199 43 1 9.8684 -1.2308 5.4023 44 1 8.6516 -3.3405 5.0823 45 1 4.7577 -5.1982 3.1394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775248405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:09 Heat of formation + Delta-G solvation = -95.357527 kcal Electronic energy + Delta-G solvation = -26889.731874 eV Core-core repulsion = 23065.532568 eV Total energy + Delta-G solvation = -3824.199306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.87884 -39.33259 -37.97196 -36.42642 -36.21557 -33.96927 -32.25591 -30.98595 -29.41697 -28.87477 -28.42329 -26.28722 -25.02610 -24.61025 -22.68651 -21.41047 -21.07798 -20.06612 -19.68051 -18.37543 -17.62173 -16.96057 -16.23543 -15.74932 -15.50587 -15.09692 -14.81741 -14.64141 -14.42510 -14.18232 -14.13780 -13.98971 -13.69224 -13.63003 -13.15137 -12.90678 -12.53747 -12.48201 -12.10594 -11.64137 -11.49795 -11.40803 -11.29844 -11.29206 -10.93144 -10.87494 -10.79567 -10.77266 -10.64828 -10.48385 -10.28815 -9.71144 -9.54349 -8.89576 -8.76502 -8.51653 -8.27948 -7.33830 -6.74593 -4.02117 1.69177 2.29649 3.25453 3.32450 3.45709 3.57841 3.72805 3.73872 4.12708 4.32021 4.36577 4.65257 4.66618 4.96998 5.01817 5.07126 5.15412 5.18499 5.22109 5.25091 5.33209 5.39248 5.41116 5.46635 5.52970 5.60103 5.64404 5.70789 5.75340 5.79798 5.91324 6.01135 6.09597 6.11347 6.21306 6.37374 6.52230 6.66501 6.91434 6.98074 7.07500 7.11066 7.22463 7.50097 7.64252 8.13411 8.44378 8.92590 9.09031 9.63663 10.70707 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.003443 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.788738 B = 8130.041704 C = 9892.340172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.091 3.909 4 H 0.065 0.935 5 C -0.147 4.147 6 C -0.122 4.122 7 C -0.121 4.121 8 C -0.103 4.103 9 H 0.083 0.917 10 C 0.144 3.856 11 N -0.743 5.743 12 C 0.558 3.442 13 O -0.515 6.515 14 C -0.230 4.230 15 C -0.038 4.038 16 C -0.230 4.230 17 C -0.051 4.051 18 C -0.235 4.235 19 C 0.192 3.808 20 O -0.148 6.148 21 C -0.482 4.482 22 H 0.086 0.914 23 C 0.014 3.986 24 N -0.862 5.862 25 Si 1.099 2.901 26 H -0.280 1.280 27 H -0.282 1.282 28 H -0.275 1.275 29 H 0.038 0.962 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.390 0.610 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.132 0.868 45 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 18.106 -6.304 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C 0.032 3.968 4 H 0.083 0.917 5 C -0.184 4.184 6 C -0.160 4.160 7 C -0.158 4.158 8 C -0.121 4.121 9 H 0.101 0.899 10 C 0.021 3.979 11 N -0.399 5.399 12 C 0.347 3.653 13 O -0.390 6.390 14 C -0.235 4.235 15 C -0.057 4.057 16 C -0.250 4.250 17 C -0.070 4.070 18 C -0.254 4.254 19 C 0.133 3.867 20 O -0.047 6.047 21 C -0.557 4.557 22 H 0.103 0.897 23 C -0.195 4.195 24 N -0.492 5.492 25 Si 0.923 3.077 26 H -0.206 1.206 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.224 0.776 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.150 0.850 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.081 15.397 -6.271 17.119 hybrid contribution 0.498 2.468 -0.165 2.523 sum -3.583 17.866 -6.435 19.324 Atomic orbital electron populations 1.22786 0.81333 1.02974 0.99524 1.88052 1.19368 1.26955 1.94829 1.22763 0.93976 0.84879 0.95138 0.91696 1.22904 0.97754 1.00525 0.97248 1.22409 0.95574 0.98516 0.99482 1.22480 0.97120 1.00181 0.96063 1.22152 0.94027 0.97840 0.98129 0.89865 1.20986 0.86541 0.94823 0.95593 1.45933 1.27314 1.10638 1.55984 1.18171 0.84729 0.83175 0.79208 1.90865 1.58563 1.30723 1.58854 1.18891 0.99936 0.92622 1.12006 1.20741 0.94114 0.95070 0.95778 1.20466 0.99728 0.97788 1.06974 1.20903 0.97599 0.92328 0.96166 1.21170 0.98090 0.99264 1.06890 1.19118 0.90264 0.86031 0.91280 1.83859 1.49081 1.13953 1.57778 1.22451 1.12131 0.89061 1.32060 0.89651 1.26608 0.94771 0.99659 0.98467 1.70396 1.18521 1.35460 1.24788 0.83069 0.75216 0.73903 0.75523 1.20636 1.20751 1.19967 0.94343 0.89498 0.94137 0.90253 0.91653 0.91219 0.91453 0.91257 0.90663 0.91341 0.91371 0.77599 0.87068 0.87230 0.87125 0.85005 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.85 101.05 1.10 1.39 16 2 O -0.37 -4.71 8.46 -35.23 -0.30 -5.01 16 3 C 0.09 0.92 3.36 -25.61 -0.09 0.84 16 4 H 0.06 0.56 7.80 -51.93 -0.41 0.15 16 5 C -0.15 -1.27 6.56 -25.07 -0.16 -1.43 16 6 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 7 C -0.12 -1.14 6.08 -25.07 -0.15 -1.29 16 8 C -0.10 -1.11 2.96 -89.50 -0.27 -1.37 16 9 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 10 C 0.14 2.23 4.01 -4.04 -0.02 2.21 16 11 N -0.74 -12.32 5.35 -61.35 -0.33 -12.64 16 12 C 0.56 12.52 7.76 -12.47 -0.10 12.43 16 13 O -0.51 -14.26 15.17 -16.57 -0.25 -14.51 16 14 C -0.23 -5.09 5.89 -104.81 -0.62 -5.71 16 15 C -0.04 -0.66 9.53 -39.20 -0.37 -1.04 16 16 C -0.23 -3.84 10.03 -39.61 -0.40 -4.23 16 17 C -0.05 -0.93 10.03 -39.53 -0.40 -1.33 16 18 C -0.23 -5.21 9.16 -39.44 -0.36 -5.57 16 19 C 0.19 4.89 6.66 -38.60 -0.26 4.64 16 20 O -0.15 -4.42 7.24 -21.05 -0.15 -4.58 16 21 C -0.48 -14.03 9.49 30.91 0.29 -13.74 16 22 H 0.09 2.29 5.21 -52.48 -0.27 2.02 16 23 C 0.01 0.41 5.49 -17.51 -0.10 0.31 16 24 N -0.86 -27.13 13.70 55.48 0.76 -26.37 16 25 Si 1.10 24.27 29.92 -169.99 -5.09 19.19 16 26 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 28 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.84 7.76 -51.93 -0.40 0.43 16 38 H 0.07 1.21 7.91 -51.93 -0.41 0.80 16 39 H 0.07 1.20 7.65 -51.93 -0.40 0.80 16 40 H 0.39 5.12 6.39 -40.82 -0.26 4.86 16 41 H 0.11 1.48 6.40 -52.49 -0.34 1.14 16 42 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.13 2.92 5.64 -52.49 -0.30 2.62 16 45 H 0.30 9.94 7.97 -40.82 -0.33 9.61 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -35.50 367.93 -8.42 -43.93 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.55 Total: 9.48 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -2.06 Total: -15.03 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.43 Total: -39.01 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.70 Total: -24.09 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.09 Total: 19.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.50 -8.42 -43.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775248405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.432 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds