Wall clock time and date at job start Tue Mar 31 2020 12:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99946 * 2 1 4 4 C 1.52997 * 109.47209 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47190 * 64.99786 * 4 3 2 6 6 C 1.42894 * 114.00004 * 180.02562 * 5 4 3 7 7 C 1.53500 * 114.20443 * 150.00578 * 6 5 4 8 8 N 1.47063 * 87.98869 * 139.65443 * 7 6 5 9 9 C 1.34776 * 136.06178 * 152.83797 * 8 7 6 10 10 O 1.21280 * 120.00005 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00288 * 180.02562 * 9 8 7 12 12 C 1.50700 * 109.47024 * 180.02562 * 11 9 8 13 13 C 1.37635 * 120.12548 * 264.72495 * 12 11 9 14 14 C 1.38611 * 120.24604 * 180.28006 * 13 12 11 15 15 C 1.38665 * 120.50491 * 359.97438 * 14 13 12 16 16 C 1.37597 * 120.24402 * 0.02562 * 15 14 13 17 17 C 1.40695 * 120.12627 * 85.00255 * 12 11 9 18 18 C 1.41399 * 120.24625 * 359.70111 * 17 12 11 19 19 H 1.07999 * 119.99540 * 334.07374 * 18 17 12 20 20 C 1.39947 * 120.00059 * 154.07621 * 18 17 12 21 21 N 1.30819 * 119.99909 * 343.62915 * 20 18 17 22 22 Si 1.86796 * 119.99953 * 163.63589 * 20 18 17 23 23 H 1.48508 * 109.47269 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47219 * 119.99743 * 22 20 18 25 25 H 1.48501 * 109.47311 * 239.99733 * 22 20 18 26 26 C 1.47069 * 87.88638 * 333.10019 * 8 7 6 27 27 H 1.08997 * 109.47258 * 60.00087 * 1 2 3 28 28 H 1.09005 * 109.47312 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47111 * 300.00162 * 1 2 3 30 30 H 1.09005 * 109.47346 * 60.00195 * 3 2 1 31 31 H 1.09003 * 109.47394 * 299.99938 * 3 2 1 32 32 H 1.09005 * 109.47216 * 305.00140 * 4 3 2 33 33 H 1.09000 * 109.47533 * 184.99957 * 4 3 2 34 34 H 1.08999 * 113.28686 * 16.93592 * 6 5 4 35 35 H 1.09002 * 113.46946 * 24.87382 * 7 6 5 36 36 H 1.09001 * 113.51815 * 254.43939 * 7 6 5 37 37 H 1.09002 * 109.46963 * 60.00189 * 11 9 8 38 38 H 1.09001 * 109.47040 * 300.00578 * 11 9 8 39 39 H 1.07994 * 119.87908 * 0.25025 * 13 12 11 40 40 H 1.08000 * 119.74977 * 179.97438 * 14 13 12 41 41 H 1.07990 * 119.87834 * 180.02562 * 15 14 13 42 42 H 1.07997 * 120.12721 * 179.97438 * 16 15 14 43 43 H 0.97004 * 119.99812 * 180.02562 * 21 20 18 44 44 H 1.09002 * 113.47253 * 141.67565 * 26 8 7 45 45 H 1.08998 * 113.46851 * 272.12250 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3821 0.4186 -1.3215 7 6 5.8201 -0.7861 -2.1659 8 7 6.8853 0.0593 -2.7257 9 6 8.1097 -0.1433 -3.2514 10 8 8.5542 -1.2684 -3.3372 11 6 8.9264 1.0283 -3.7325 12 6 10.2443 0.5344 -4.2714 13 6 11.3585 0.5182 -3.4636 14 6 12.5732 0.0699 -3.9584 15 6 12.6808 -0.3674 -5.2699 16 6 11.5800 -0.3601 -6.0954 17 6 10.3416 0.0935 -5.6039 18 6 9.2035 0.1051 -6.4429 19 1 8.2151 0.0384 -6.0130 20 6 9.3580 0.2029 -7.8304 21 7 10.4975 0.6006 -8.3352 22 14 7.9372 -0.2342 -8.9615 23 1 6.7674 -0.6528 -8.1479 24 1 7.5732 0.9506 -9.7796 25 1 8.3413 -1.3483 -9.8563 26 6 6.0293 1.2238 -2.4535 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9784 2.1765 0.0902 34 1 5.8950 0.5031 -0.3635 35 1 5.0774 -1.0931 -2.9023 36 1 6.1947 -1.6201 -1.5724 37 1 9.1061 1.7114 -2.9023 38 1 8.3842 1.5498 -4.5212 39 1 11.2863 0.8566 -2.4406 40 1 13.4425 0.0610 -3.3176 41 1 13.6320 -0.7150 -5.6447 42 1 11.6660 -0.7007 -7.1166 43 1 10.6045 0.6688 -9.2969 44 1 6.5813 2.0960 -2.1031 45 1 5.3428 1.4576 -3.2672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777405864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:20 Heat of formation + Delta-G solvation = -64.318979 kcal Electronic energy + Delta-G solvation = -26131.752486 eV Core-core repulsion = 22308.899113 eV Total energy + Delta-G solvation = -3822.853373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.28083 -38.63233 -38.04790 -37.10180 -36.12676 -33.58486 -31.73554 -30.71374 -29.44010 -28.79343 -26.66897 -26.48106 -25.79139 -24.82038 -22.92760 -21.91879 -20.89096 -19.81050 -18.51696 -17.60044 -17.12152 -17.01781 -16.58555 -15.96680 -15.69694 -15.61903 -15.27779 -14.69738 -14.60942 -14.32556 -13.90381 -13.77959 -13.45376 -12.96974 -12.80600 -12.64462 -12.54488 -12.43408 -12.09910 -11.70709 -11.57888 -11.54579 -11.45645 -11.15512 -11.11849 -10.99314 -10.93530 -10.63849 -10.34895 -10.04293 -9.67350 -9.44881 -9.33750 -9.18160 -9.12544 -8.41682 -7.27998 -7.25814 -6.70338 -4.30605 2.75631 2.89397 3.10279 3.14600 3.16931 3.25748 3.30107 3.41330 3.67783 3.97717 4.22873 4.61932 4.67841 4.72987 4.79996 4.89457 4.98520 5.00780 5.10783 5.13991 5.31997 5.33930 5.37047 5.42964 5.59227 5.69991 5.78798 5.83315 5.91388 6.08632 6.30332 6.36465 6.46509 6.54750 6.77081 6.83838 6.98095 7.12608 7.33112 7.45697 7.68122 7.95104 8.06385 8.14325 8.16557 8.35198 8.68346 8.82349 8.95538 9.05054 10.23915 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.002861 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.117981 B = 9785.859605 C =11196.308639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.062 3.938 5 O -0.360 6.360 6 C 0.049 3.951 7 C 0.104 3.896 8 N -0.654 5.654 9 C 0.549 3.451 10 O -0.515 6.515 11 C -0.061 4.061 12 C -0.184 4.184 13 C -0.080 4.080 14 C -0.240 4.240 15 C -0.106 4.106 16 C -0.159 4.159 17 C 0.129 3.871 18 C -0.455 4.455 19 H 0.074 0.926 20 C 0.077 3.923 21 N -0.795 5.795 22 Si 0.902 3.098 23 H -0.261 1.261 24 H -0.275 1.275 25 H -0.272 1.272 26 C 0.086 3.914 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.079 0.921 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.384 5.046 13.970 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.015 4.015 4 C -0.015 4.015 5 O -0.277 6.277 6 C -0.010 4.010 7 C -0.020 4.020 8 N -0.395 5.395 9 C 0.340 3.660 10 O -0.388 6.388 11 C -0.100 4.100 12 C -0.186 4.186 13 C -0.098 4.098 14 C -0.259 4.259 15 C -0.125 4.125 16 C -0.178 4.178 17 C 0.126 3.874 18 C -0.485 4.485 19 H 0.092 0.908 20 C -0.141 4.141 21 N -0.421 5.421 22 Si 0.727 3.273 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.197 1.197 26 C -0.038 4.038 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.795 4.212 13.431 21.157 hybrid contribution -0.723 0.200 -0.458 0.879 sum -16.519 4.412 12.973 21.462 Atomic orbital electron populations 1.22747 0.81070 1.02909 0.99832 1.87975 1.19585 1.27274 1.95365 1.22579 0.92411 0.85562 1.00940 1.22610 0.93324 0.97795 0.87785 1.88003 1.20710 1.81209 1.37812 1.23939 0.81516 0.97494 0.98072 1.23030 0.88624 0.94923 0.95391 1.49502 1.14850 1.10523 1.64666 1.20931 0.78188 0.91931 0.74927 1.90700 1.69365 1.25336 1.53352 1.20194 0.95056 0.94462 1.00303 1.19062 0.92078 1.11160 0.96296 1.20290 0.93235 0.99753 0.96560 1.20306 0.96504 1.12805 0.96323 1.20677 0.97239 1.00461 0.94111 1.21292 0.92848 1.04017 0.99650 1.17352 0.92922 0.86935 0.90175 1.19504 0.94045 1.44398 0.90539 0.90818 1.25879 0.96696 0.92302 0.99180 1.69829 1.25157 1.33033 1.14056 0.86351 0.81993 0.78965 0.79983 1.18491 1.20005 1.19682 1.23367 0.91928 0.91357 0.97121 0.93973 0.89561 0.94245 0.91841 0.92241 0.92164 0.91408 0.88040 0.89444 0.90307 0.90693 0.88576 0.89763 0.89630 0.89550 0.86514 0.91030 0.90290 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.77 10.67 -40.09 -0.43 -4.20 16 3 C 0.06 0.45 6.32 37.16 0.23 0.69 16 4 C 0.06 0.48 6.16 37.16 0.23 0.71 16 5 O -0.36 -3.90 10.36 -40.09 -0.42 -4.31 16 6 C 0.05 0.52 4.65 -26.35 -0.12 0.40 16 7 C 0.10 1.44 8.46 -8.51 -0.07 1.37 16 8 N -0.65 -10.74 3.69 -185.40 -0.68 -11.43 16 9 C 0.55 11.55 7.70 -10.98 -0.08 11.47 16 10 O -0.51 -13.18 16.81 5.56 0.09 -13.08 16 11 C -0.06 -1.25 5.01 -29.03 -0.15 -1.39 16 12 C -0.18 -4.57 4.43 -103.92 -0.46 -5.04 16 13 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 14 C -0.24 -5.71 10.05 -39.29 -0.39 -6.10 16 15 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 16 C -0.16 -4.34 8.69 -38.87 -0.34 -4.68 16 17 C 0.13 3.53 5.56 -106.82 -0.59 2.94 16 18 C -0.46 -12.33 8.14 -37.74 -0.31 -12.64 16 19 H 0.07 1.98 6.67 -52.49 -0.35 1.63 16 20 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 21 N -0.80 -20.88 10.97 55.55 0.61 -20.27 16 22 Si 0.90 19.38 29.59 -169.99 -5.03 14.35 16 23 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 C 0.09 1.02 8.25 -8.63 -0.07 0.95 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.92 7.88 -51.93 -0.41 0.51 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.29 8.05 -51.93 -0.42 0.88 16 38 H 0.10 1.97 7.07 -51.93 -0.37 1.60 16 39 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.12 3.27 6.22 -52.49 -0.33 2.94 16 43 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -33.63 380.60 -8.93 -42.56 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.92 Total: 4.11 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -1.88 Total: -13.46 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: -0.08 Total: -31.70 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.75 Total: -21.60 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.63 -8.93 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777405864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.762 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds