Wall clock time and date at job start Tue Mar 31 2020 12:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99946 * 2 1 4 4 C 1.52997 * 109.47209 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47190 * 64.99786 * 4 3 2 6 6 C 1.42894 * 114.00004 * 180.02562 * 5 4 3 7 7 C 1.53500 * 114.20443 * 150.00578 * 6 5 4 8 8 N 1.47063 * 87.98869 * 139.65443 * 7 6 5 9 9 C 1.34776 * 136.06178 * 152.83797 * 8 7 6 10 10 O 1.21280 * 120.00005 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00288 * 180.02562 * 9 8 7 12 12 C 1.50700 * 109.47024 * 180.02562 * 11 9 8 13 13 C 1.37635 * 120.12548 * 264.72495 * 12 11 9 14 14 C 1.38611 * 120.24604 * 180.28006 * 13 12 11 15 15 C 1.38665 * 120.50491 * 359.97438 * 14 13 12 16 16 C 1.37597 * 120.24402 * 0.02562 * 15 14 13 17 17 C 1.40695 * 120.12627 * 85.00255 * 12 11 9 18 18 C 1.41399 * 120.24625 * 359.70111 * 17 12 11 19 19 H 1.07999 * 119.99540 * 334.07374 * 18 17 12 20 20 C 1.39947 * 120.00059 * 154.07621 * 18 17 12 21 21 N 1.30819 * 119.99909 * 343.62915 * 20 18 17 22 22 Si 1.86796 * 119.99953 * 163.63589 * 20 18 17 23 23 H 1.48508 * 109.47269 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47219 * 119.99743 * 22 20 18 25 25 H 1.48501 * 109.47311 * 239.99733 * 22 20 18 26 26 C 1.47069 * 87.88638 * 333.10019 * 8 7 6 27 27 H 1.08997 * 109.47258 * 60.00087 * 1 2 3 28 28 H 1.09005 * 109.47312 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47111 * 300.00162 * 1 2 3 30 30 H 1.09005 * 109.47346 * 60.00195 * 3 2 1 31 31 H 1.09003 * 109.47394 * 299.99938 * 3 2 1 32 32 H 1.09005 * 109.47216 * 305.00140 * 4 3 2 33 33 H 1.09000 * 109.47533 * 184.99957 * 4 3 2 34 34 H 1.08999 * 113.28686 * 16.93592 * 6 5 4 35 35 H 1.09002 * 113.46946 * 24.87382 * 7 6 5 36 36 H 1.09001 * 113.51815 * 254.43939 * 7 6 5 37 37 H 1.09002 * 109.46963 * 60.00189 * 11 9 8 38 38 H 1.09001 * 109.47040 * 300.00578 * 11 9 8 39 39 H 1.07994 * 119.87908 * 0.25025 * 13 12 11 40 40 H 1.08000 * 119.74977 * 179.97438 * 14 13 12 41 41 H 1.07990 * 119.87834 * 180.02562 * 15 14 13 42 42 H 1.07997 * 120.12721 * 179.97438 * 16 15 14 43 43 H 0.97004 * 119.99812 * 180.02562 * 21 20 18 44 44 H 1.09002 * 113.47253 * 141.67565 * 26 8 7 45 45 H 1.08998 * 113.46851 * 272.12250 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3821 0.4186 -1.3215 7 6 5.8201 -0.7861 -2.1659 8 7 6.8853 0.0593 -2.7257 9 6 8.1097 -0.1433 -3.2514 10 8 8.5542 -1.2684 -3.3372 11 6 8.9264 1.0283 -3.7325 12 6 10.2443 0.5344 -4.2714 13 6 11.3585 0.5182 -3.4636 14 6 12.5732 0.0699 -3.9584 15 6 12.6808 -0.3674 -5.2699 16 6 11.5800 -0.3601 -6.0954 17 6 10.3416 0.0935 -5.6039 18 6 9.2035 0.1051 -6.4429 19 1 8.2151 0.0384 -6.0130 20 6 9.3580 0.2029 -7.8304 21 7 10.4975 0.6006 -8.3352 22 14 7.9372 -0.2342 -8.9615 23 1 6.7674 -0.6528 -8.1479 24 1 7.5732 0.9506 -9.7796 25 1 8.3413 -1.3483 -9.8563 26 6 6.0293 1.2238 -2.4535 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9784 2.1765 0.0902 34 1 5.8950 0.5031 -0.3635 35 1 5.0774 -1.0931 -2.9023 36 1 6.1947 -1.6201 -1.5724 37 1 9.1061 1.7114 -2.9023 38 1 8.3842 1.5498 -4.5212 39 1 11.2863 0.8566 -2.4406 40 1 13.4425 0.0610 -3.3176 41 1 13.6320 -0.7150 -5.6447 42 1 11.6660 -0.7007 -7.1166 43 1 10.6045 0.6688 -9.2969 44 1 6.5813 2.0960 -2.1031 45 1 5.3428 1.4576 -3.2672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777405864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:19 Heat of formation + Delta-G solvation = -86.056169 kcal Electronic energy + Delta-G solvation = -26132.695081 eV Core-core repulsion = 22308.899113 eV Total energy + Delta-G solvation = -3823.795969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47613 -39.94331 -39.08593 -38.55033 -37.17385 -35.51970 -33.50652 -31.51899 -31.33423 -30.09153 -28.09638 -27.12200 -27.08515 -26.55722 -23.51463 -23.09268 -22.81506 -21.51940 -19.87268 -19.07662 -18.45398 -17.94721 -17.61027 -17.32361 -16.86170 -16.57667 -16.40111 -16.17781 -16.00579 -15.56080 -15.31657 -15.17442 -14.71019 -14.42873 -14.32639 -14.01314 -13.57327 -13.54049 -13.38697 -13.08943 -12.94078 -12.87998 -12.76815 -12.66571 -12.50783 -12.24542 -12.21739 -12.13606 -11.86568 -11.33820 -11.23531 -11.04899 -10.86884 -10.59757 -10.44457 -9.73909 -9.24091 -9.18243 -8.61845 -6.31592 0.95806 1.10421 1.33358 1.46670 1.50047 1.69916 1.84720 2.18176 2.74806 2.78061 2.92310 3.27758 3.59861 3.85886 3.97538 4.08970 4.24024 4.28542 4.32243 4.37648 4.47929 4.50119 4.54920 4.55903 4.58971 4.61753 4.64418 4.66323 4.69614 4.76937 4.77901 4.89978 4.93252 4.96281 5.08422 5.18118 5.35459 5.53274 5.75811 6.02428 6.15053 6.18493 6.20248 6.32418 6.40518 6.70368 6.74248 6.97348 7.09213 7.27281 8.34918 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.002861 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.117981 B = 9785.859605 C =11196.308639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.056 3.944 4 C 0.054 3.946 5 O -0.378 6.378 6 C 0.077 3.923 7 C 0.089 3.911 8 N -0.657 5.657 9 C 0.548 3.452 10 O -0.576 6.576 11 C -0.056 4.056 12 C -0.192 4.192 13 C -0.089 4.089 14 C -0.242 4.242 15 C -0.116 4.116 16 C -0.193 4.193 17 C 0.094 3.906 18 C -0.482 4.482 19 H 0.065 0.935 20 C 0.037 3.963 21 N -0.824 5.824 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.257 1.257 25 H -0.267 1.267 26 C 0.085 3.915 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.287 0.713 44 H 0.108 0.892 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.780 6.768 15.891 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.020 4.020 4 C -0.022 4.022 5 O -0.296 6.296 6 C 0.017 3.983 7 C -0.034 4.034 8 N -0.396 5.396 9 C 0.339 3.661 10 O -0.454 6.454 11 C -0.095 4.095 12 C -0.194 4.194 13 C -0.107 4.107 14 C -0.261 4.261 15 C -0.134 4.134 16 C -0.213 4.213 17 C 0.092 3.908 18 C -0.512 4.512 19 H 0.083 0.917 20 C -0.178 4.178 21 N -0.451 5.451 22 Si 0.792 3.208 23 H -0.191 1.191 24 H -0.181 1.181 25 H -0.192 1.192 26 C -0.038 4.038 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.111 0.889 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.125 0.875 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.126 0.874 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.239 5.985 15.381 23.866 hybrid contribution -0.336 -0.309 -0.915 1.023 sum -17.576 5.676 14.466 23.460 Atomic orbital electron populations 1.22881 0.79796 1.03480 1.00835 1.87923 1.21216 1.28933 1.95613 1.22764 0.92131 0.84908 1.02166 1.22907 0.93748 0.99079 0.86479 1.87986 1.20291 1.81660 1.39631 1.23654 0.82035 0.94330 0.98234 1.23274 0.87803 0.96307 0.95989 1.49404 1.14072 1.13459 1.62623 1.20813 0.79563 0.90939 0.74738 1.90665 1.71326 1.27216 1.56228 1.20164 0.93173 0.94834 1.01374 1.19553 0.94463 1.09819 0.95590 1.20740 0.92787 0.99151 0.98045 1.20746 0.97873 1.11352 0.96085 1.20965 0.97443 1.00296 0.94700 1.21300 0.94250 1.06222 0.99505 1.17755 0.93203 0.87951 0.91886 1.19591 0.93630 1.46330 0.91672 0.91690 1.26643 0.99295 0.91715 1.00134 1.69876 1.26839 1.33540 1.14808 0.85333 0.78363 0.79206 0.77872 1.19141 1.18120 1.19212 1.23649 0.91340 0.91048 0.97741 0.93618 0.89352 0.92540 0.89225 0.92313 0.91802 0.88610 0.85607 0.89998 0.90798 0.86832 0.88897 0.86326 0.86405 0.87489 0.88497 0.90276 0.87388 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.59 10.67 -144.34 -1.54 -9.13 16 3 C 0.06 0.69 6.32 71.98 0.45 1.15 16 4 C 0.05 0.67 6.16 71.98 0.44 1.11 16 5 O -0.38 -7.26 10.36 -144.34 -1.50 -8.75 16 6 C 0.08 1.43 4.65 30.85 0.14 1.58 16 7 C 0.09 2.41 8.46 83.18 0.70 3.12 16 8 N -0.66 -20.88 3.69 -859.33 -3.17 -24.05 16 9 C 0.55 23.01 7.70 87.66 0.67 23.68 16 10 O -0.58 -30.32 16.81 -3.03 -0.05 -30.37 16 11 C -0.06 -2.26 5.01 29.10 0.15 -2.12 16 12 C -0.19 -9.59 4.43 -19.41 -0.09 -9.67 16 13 C -0.09 -4.09 9.66 22.22 0.21 -3.88 16 14 C -0.24 -11.16 10.05 22.46 0.23 -10.94 16 15 C -0.12 -5.81 10.02 22.22 0.22 -5.59 16 16 C -0.19 -10.97 8.69 22.73 0.20 -10.77 16 17 C 0.09 5.35 5.56 -21.29 -0.12 5.23 16 18 C -0.48 -27.12 8.14 23.46 0.19 -26.93 16 19 H 0.06 3.63 6.67 -2.91 -0.02 3.61 16 20 C 0.04 1.93 5.16 85.26 0.44 2.37 16 21 N -0.82 -44.64 10.97 21.83 0.24 -44.40 16 22 Si 0.97 40.61 29.59 68.60 2.03 42.64 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 C 0.08 1.77 8.25 83.10 0.69 2.46 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.13 1.79 7.88 -2.39 -0.02 1.77 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.11 3.59 8.05 -2.39 -0.02 3.57 16 38 H 0.09 3.79 7.07 -2.39 -0.02 3.77 16 39 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 40 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 41 H 0.11 4.75 8.06 -2.92 -0.02 4.73 16 42 H 0.10 5.74 6.22 -2.91 -0.02 5.72 16 43 H 0.29 14.00 8.30 -92.71 -0.77 13.24 16 44 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -76.67 380.60 2.77 -73.89 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.98 Total: 27.81 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 5.79 Total: -27.65 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: -2.93 Total: -68.45 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -3.09 Total: -48.25 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -76.67 2.77 -73.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777405864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.162 kcal (2) G-P(sol) polarization free energy of solvation -76.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds