Wall clock time and date at job start Tue Mar 31 2020 12:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 116.99961 * 2 1 4 4 O 1.20827 * 120.00022 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99863 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.47186 * 180.02562 * 5 3 2 7 7 C 1.34781 * 119.99375 * 269.99689 * 6 5 3 8 8 O 1.21281 * 120.00309 * 4.44953 * 7 6 5 9 9 C 1.50707 * 119.99527 * 184.44764 * 7 6 5 10 10 C 1.52994 * 109.46774 * 174.46509 * 9 7 6 11 11 C 1.53008 * 109.47064 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47064 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47147 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99621 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00405 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99793 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00261 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47248 * 89.99951 * 17 15 13 19 19 H 1.48504 * 109.47076 * 210.00041 * 17 15 13 20 20 H 1.48496 * 109.46940 * 329.99947 * 17 15 13 21 21 C 1.39924 * 120.00217 * 89.99592 * 6 5 3 22 22 C 1.38868 * 120.06755 * 246.56100 * 21 6 5 23 23 C 1.38111 * 119.92850 * 179.97438 * 22 21 6 24 24 C 1.38283 * 120.06985 * 359.97438 * 23 22 21 25 25 C 1.38285 * 120.14320 * 0.04153 * 24 23 22 26 26 C 1.38114 * 120.06799 * 359.95805 * 25 24 23 27 27 H 1.08991 * 109.47366 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46689 * 300.00202 * 1 2 3 29 29 H 1.08995 * 109.47516 * 59.99646 * 1 2 3 30 30 H 1.08995 * 109.47858 * 59.99686 * 5 3 2 31 31 H 1.09003 * 109.47286 * 299.99750 * 5 3 2 32 32 H 1.08998 * 109.47306 * 294.46572 * 9 7 6 33 33 H 1.08998 * 109.46760 * 54.46854 * 9 7 6 34 34 H 1.09004 * 109.47662 * 300.00192 * 10 9 7 35 35 H 1.09001 * 109.47659 * 60.00410 * 10 9 7 36 36 H 1.08998 * 109.47011 * 300.00059 * 11 10 9 37 37 H 1.08998 * 109.46765 * 60.00163 * 11 10 9 38 38 H 1.08998 * 109.47255 * 299.99910 * 12 11 10 39 39 H 1.09001 * 109.47659 * 60.00226 * 12 11 10 40 40 H 0.97005 * 120.00195 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.03940 * 359.70410 * 22 21 6 42 42 H 1.08003 * 119.96581 * 179.97438 * 23 22 21 43 43 H 1.08005 * 119.93031 * 180.02562 * 24 23 22 44 44 H 1.07994 * 119.96875 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.03825 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.1724 3.3266 -1.1668 8 8 3.9226 2.7715 -2.2158 9 6 4.6958 4.7399 -1.1681 10 6 4.9499 5.1882 -2.6087 11 6 5.4819 6.6228 -2.6100 12 6 5.7354 7.0713 -4.0506 13 6 6.2588 8.4846 -4.0520 14 1 6.3965 9.0103 -3.1187 15 6 6.5610 9.1067 -5.2447 16 7 6.3929 8.4666 -6.3812 17 14 7.2105 10.8581 -5.2464 18 1 8.6932 10.8363 -5.1682 19 1 6.7906 11.5405 -6.4967 20 1 6.6638 11.5898 -4.0755 21 6 4.1806 3.3500 1.2123 22 6 3.3393 4.3930 1.5767 23 6 3.5379 5.0522 2.7740 24 6 4.5727 4.6742 3.6098 25 6 5.4123 3.6361 3.2496 26 6 5.2191 2.9729 2.0536 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.9558 0.7809 -0.8907 31 1 3.9564 0.7806 0.8892 32 1 3.9614 5.3998 -0.7064 33 1 5.6278 4.7826 -0.6046 34 1 5.6843 4.5283 -3.0705 35 1 4.0179 5.1455 -3.1723 36 1 4.7478 7.2830 -2.1482 37 1 6.4140 6.6651 -2.0466 38 1 6.4693 6.4112 -4.5129 39 1 4.8031 7.0291 -4.6138 40 1 6.6051 8.9044 -7.2205 41 1 2.5334 4.6914 0.9226 42 1 2.8843 5.8638 3.0579 43 1 4.7256 5.1909 4.5458 44 1 6.2198 3.3435 3.9043 45 1 5.8753 2.1626 1.7726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808429710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:27 Heat of formation + Delta-G solvation = -103.347675 kcal Electronic energy + Delta-G solvation = -26357.655050 eV Core-core repulsion = 22533.109266 eV Total energy + Delta-G solvation = -3824.545785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23736 -40.14446 -38.83734 -36.80648 -35.59109 -34.88411 -32.65443 -31.33009 -30.89185 -29.77735 -28.85174 -27.21393 -25.40363 -23.35487 -22.88379 -22.26062 -21.32368 -19.97431 -19.65941 -18.06860 -17.71659 -17.20595 -16.73183 -16.45835 -16.23422 -16.05293 -15.65256 -15.02773 -14.77533 -14.41234 -14.05330 -13.93664 -13.69979 -13.67733 -13.58063 -12.98302 -12.63051 -12.46068 -12.39536 -12.19943 -11.87915 -11.60412 -11.58584 -11.50384 -11.08563 -10.95983 -10.89324 -10.52972 -10.48711 -10.38474 -10.16465 -9.63850 -9.57091 -9.23399 -9.20408 -8.96124 -8.73294 -8.27875 -5.92701 -3.95019 0.91061 1.09875 1.93750 2.06527 2.56390 2.84555 3.35843 3.41728 3.44979 3.45234 4.34005 4.46389 4.51502 4.65710 4.67441 4.75473 4.81207 4.84838 4.89468 4.99801 5.13040 5.21505 5.26610 5.31042 5.38929 5.40919 5.42883 5.71992 5.84877 5.89865 6.07397 6.09276 6.15929 6.23139 6.26561 6.32463 6.56784 6.58631 6.86505 7.03278 7.14441 7.24232 7.46349 7.76994 7.93173 7.99063 8.08982 8.50832 9.12639 9.68464 11.18696 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.002775 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.282754 B =10089.231118 C =11481.312048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.444 3.556 4 O -0.492 6.492 5 C 0.125 3.875 6 N -0.564 5.564 7 C 0.527 3.473 8 O -0.517 6.517 9 C -0.133 4.133 10 C -0.104 4.104 11 C -0.109 4.109 12 C 0.020 3.980 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.130 3.870 22 C -0.107 4.107 23 C -0.108 4.108 24 C -0.117 4.117 25 C -0.110 4.110 26 C -0.120 4.120 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.233 -17.838 23.093 30.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.284 3.716 4 O -0.378 6.378 5 C 0.001 3.999 6 N -0.295 5.295 7 C 0.318 3.682 8 O -0.391 6.391 9 C -0.173 4.173 10 C -0.142 4.142 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.557 4.557 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.040 3.960 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.135 4.135 25 C -0.129 4.129 26 C -0.140 4.140 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.139 0.861 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.595 -17.826 22.256 29.509 hybrid contribution 0.012 0.993 -0.027 0.994 sum -7.583 -16.833 22.229 28.896 Atomic orbital electron populations 1.23260 0.76127 1.03663 1.02649 1.86480 1.23638 1.33317 1.84322 1.24375 0.92724 0.81739 0.72787 1.90679 1.66750 1.36326 1.44030 1.20935 0.87452 0.84217 1.07256 1.45292 1.68160 1.10762 1.05303 1.21330 0.75873 0.89125 0.81846 1.90717 1.49569 1.68202 1.30581 1.21840 1.02439 0.90968 1.02033 1.21495 1.02124 0.98328 0.92254 1.21635 0.99092 0.92692 1.01239 1.19094 0.96937 0.95744 0.89915 1.21285 1.43049 0.99044 0.92365 0.92752 1.25039 0.95903 0.97921 0.95723 1.69978 1.48972 1.37182 0.97391 0.86612 0.79135 0.84968 0.77385 1.20711 1.21269 1.19920 1.17593 0.95872 0.95671 0.86892 1.21451 0.98255 0.95972 0.96944 1.21116 0.98097 0.99600 0.93814 1.21259 0.95282 0.97117 0.99835 1.21040 0.99535 0.96081 0.96218 1.21259 0.96543 1.01272 0.94925 0.88019 0.91971 0.91765 0.85149 0.86051 0.88736 0.88966 0.91843 0.91655 0.93443 0.93434 0.96596 0.96582 0.93066 0.85196 0.85396 0.85691 0.85455 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.66 10.57 -39.26 -0.41 -4.08 16 3 C 0.44 5.26 8.02 36.00 0.29 5.55 16 4 O -0.49 -7.36 16.18 -18.75 -0.30 -7.67 16 5 C 0.13 1.22 5.91 -5.19 -0.03 1.19 16 6 N -0.56 -6.71 2.02 -114.74 -0.23 -6.95 16 7 C 0.53 8.00 7.53 -10.98 -0.08 7.92 16 8 O -0.52 -9.56 15.61 5.56 0.09 -9.47 16 9 C -0.13 -1.99 4.36 -27.88 -0.12 -2.11 16 10 C -0.10 -1.95 4.52 -26.73 -0.12 -2.07 16 11 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 12 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 14 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.84 13.29 55.43 0.74 -27.10 16 17 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.13 1.36 4.43 -83.70 -0.37 0.99 16 22 C -0.11 -1.14 8.44 -39.39 -0.33 -1.47 16 23 C -0.11 -0.94 10.04 -39.61 -0.40 -1.34 16 24 C -0.12 -0.88 10.04 -39.55 -0.40 -1.27 16 25 C -0.11 -0.80 10.04 -39.61 -0.40 -1.20 16 26 C -0.12 -1.00 9.63 -39.39 -0.38 -1.38 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 30 H 0.13 1.23 7.49 -51.93 -0.39 0.84 16 31 H 0.12 0.74 7.82 -51.93 -0.41 0.34 16 32 H 0.09 1.33 6.97 -51.93 -0.36 0.96 16 33 H 0.09 1.24 8.02 -51.93 -0.42 0.82 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.13 1.54 7.88 -52.49 -0.41 1.13 16 42 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -36.30 386.36 -8.31 -44.60 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -7.02 Total: -2.45 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.96 Total: -9.84 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.51 Total: -34.05 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.63 Total: -21.21 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.30 -8.31 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808429710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.743 kcal (2) G-P(sol) polarization free energy of solvation -36.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds