Wall clock time and date at job start Tue Mar 31 2020 12:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 116.99961 * 2 1 4 4 O 1.20827 * 120.00022 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99863 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.47186 * 180.02562 * 5 3 2 7 7 C 1.34781 * 119.99375 * 269.99689 * 6 5 3 8 8 O 1.21281 * 120.00309 * 4.44953 * 7 6 5 9 9 C 1.50707 * 119.99527 * 184.44764 * 7 6 5 10 10 C 1.52994 * 109.46774 * 174.46509 * 9 7 6 11 11 C 1.53008 * 109.47064 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47064 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47147 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99621 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00405 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99793 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00261 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47248 * 89.99951 * 17 15 13 19 19 H 1.48504 * 109.47076 * 210.00041 * 17 15 13 20 20 H 1.48496 * 109.46940 * 329.99947 * 17 15 13 21 21 C 1.39924 * 120.00217 * 89.99592 * 6 5 3 22 22 C 1.38868 * 120.06755 * 246.56100 * 21 6 5 23 23 C 1.38111 * 119.92850 * 179.97438 * 22 21 6 24 24 C 1.38283 * 120.06985 * 359.97438 * 23 22 21 25 25 C 1.38285 * 120.14320 * 0.04153 * 24 23 22 26 26 C 1.38114 * 120.06799 * 359.95805 * 25 24 23 27 27 H 1.08991 * 109.47366 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46689 * 300.00202 * 1 2 3 29 29 H 1.08995 * 109.47516 * 59.99646 * 1 2 3 30 30 H 1.08995 * 109.47858 * 59.99686 * 5 3 2 31 31 H 1.09003 * 109.47286 * 299.99750 * 5 3 2 32 32 H 1.08998 * 109.47306 * 294.46572 * 9 7 6 33 33 H 1.08998 * 109.46760 * 54.46854 * 9 7 6 34 34 H 1.09004 * 109.47662 * 300.00192 * 10 9 7 35 35 H 1.09001 * 109.47659 * 60.00410 * 10 9 7 36 36 H 1.08998 * 109.47011 * 300.00059 * 11 10 9 37 37 H 1.08998 * 109.46765 * 60.00163 * 11 10 9 38 38 H 1.08998 * 109.47255 * 299.99910 * 12 11 10 39 39 H 1.09001 * 109.47659 * 60.00226 * 12 11 10 40 40 H 0.97005 * 120.00195 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.03940 * 359.70410 * 22 21 6 42 42 H 1.08003 * 119.96581 * 179.97438 * 23 22 21 43 43 H 1.08005 * 119.93031 * 180.02562 * 24 23 22 44 44 H 1.07994 * 119.96875 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.03825 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.1724 3.3266 -1.1668 8 8 3.9226 2.7715 -2.2158 9 6 4.6958 4.7399 -1.1681 10 6 4.9499 5.1882 -2.6087 11 6 5.4819 6.6228 -2.6100 12 6 5.7354 7.0713 -4.0506 13 6 6.2588 8.4846 -4.0520 14 1 6.3965 9.0103 -3.1187 15 6 6.5610 9.1067 -5.2447 16 7 6.3929 8.4666 -6.3812 17 14 7.2105 10.8581 -5.2464 18 1 8.6932 10.8363 -5.1682 19 1 6.7906 11.5405 -6.4967 20 1 6.6638 11.5898 -4.0755 21 6 4.1806 3.3500 1.2123 22 6 3.3393 4.3930 1.5767 23 6 3.5379 5.0522 2.7740 24 6 4.5727 4.6742 3.6098 25 6 5.4123 3.6361 3.2496 26 6 5.2191 2.9729 2.0536 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.9558 0.7809 -0.8907 31 1 3.9564 0.7806 0.8892 32 1 3.9614 5.3998 -0.7064 33 1 5.6278 4.7826 -0.6046 34 1 5.6843 4.5283 -3.0705 35 1 4.0179 5.1455 -3.1723 36 1 4.7478 7.2830 -2.1482 37 1 6.4140 6.6651 -2.0466 38 1 6.4693 6.4112 -4.5129 39 1 4.8031 7.0291 -4.6138 40 1 6.6051 8.9044 -7.2205 41 1 2.5334 4.6914 0.9226 42 1 2.8843 5.8638 3.0579 43 1 4.7256 5.1909 4.5458 44 1 6.2198 3.3435 3.9043 45 1 5.8753 2.1626 1.7726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808429710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:26 Heat of formation + Delta-G solvation = -123.754151 kcal Electronic energy + Delta-G solvation = -26358.539942 eV Core-core repulsion = 22533.109266 eV Total energy + Delta-G solvation = -3825.430676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.17526 -41.05826 -39.71249 -37.71967 -36.79399 -36.40026 -34.67004 -32.24718 -31.73431 -31.12644 -29.77788 -28.23019 -27.02785 -24.60114 -23.56814 -23.49097 -22.42578 -21.72258 -20.57366 -18.94888 -18.67241 -18.46244 -18.13853 -17.51571 -17.26571 -17.14585 -16.69729 -16.48507 -16.03326 -15.57523 -15.26256 -14.86717 -14.58495 -14.57661 -14.50235 -14.31636 -13.84693 -13.66785 -13.60697 -13.39706 -13.16553 -13.06448 -12.84200 -12.43845 -12.35585 -12.28334 -12.18999 -12.16871 -11.89331 -11.80918 -11.48066 -11.42774 -11.26919 -10.99123 -10.55483 -10.52412 -9.86534 -9.49696 -8.19115 -6.31335 0.23901 0.46847 1.02754 1.13857 1.39831 1.42408 1.53056 1.53823 1.97725 2.41671 2.80732 3.13530 3.37573 3.68312 3.92125 3.99523 4.02414 4.06557 4.08371 4.20505 4.24010 4.25613 4.31498 4.49817 4.55347 4.58211 4.59452 4.64210 4.68790 4.75164 4.83646 5.07780 5.12131 5.14574 5.24713 5.28502 5.32041 5.47875 5.54061 5.57495 5.62349 5.75522 5.86360 5.89755 6.23021 6.25075 6.57605 6.86355 6.89109 7.38164 8.93263 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.002775 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.282754 B =10089.231118 C =11481.312048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.442 3.558 4 O -0.532 6.532 5 C 0.121 3.879 6 N -0.555 5.555 7 C 0.526 3.474 8 O -0.562 6.562 9 C -0.122 4.122 10 C -0.094 4.094 11 C -0.094 4.094 12 C 0.021 3.979 13 C -0.542 4.542 14 H 0.065 0.935 15 C -0.006 4.006 16 N -0.938 5.938 17 Si 0.970 3.030 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.260 1.260 21 C 0.107 3.893 22 C -0.126 4.126 23 C -0.115 4.115 24 C -0.113 4.113 25 C -0.106 4.106 26 C -0.116 4.116 27 H 0.137 0.863 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.134 0.866 31 H 0.165 0.835 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.052 0.948 35 H 0.042 0.958 36 H 0.055 0.945 37 H 0.062 0.938 38 H -0.012 1.012 39 H -0.017 1.017 40 H 0.263 0.737 41 H 0.106 0.894 42 H 0.139 0.861 43 H 0.151 0.849 44 H 0.157 0.843 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 -17.744 26.373 32.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.284 3.716 4 O -0.420 6.420 5 C -0.002 4.002 6 N -0.283 5.283 7 C 0.317 3.683 8 O -0.440 6.440 9 C -0.162 4.162 10 C -0.132 4.132 11 C -0.131 4.131 12 C -0.016 4.016 13 C -0.580 4.580 14 H 0.083 0.917 15 C -0.203 4.203 16 N -0.578 5.578 17 Si 0.794 3.206 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.184 1.184 21 C 0.017 3.983 22 C -0.146 4.146 23 C -0.134 4.134 24 C -0.131 4.131 25 C -0.124 4.124 26 C -0.136 4.136 27 H 0.155 0.845 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.182 0.818 32 H 0.122 0.878 33 H 0.133 0.867 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.007 0.993 39 H 0.002 0.998 40 H 0.072 0.928 41 H 0.124 0.876 42 H 0.157 0.843 43 H 0.168 0.832 44 H 0.175 0.825 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.235 -17.760 25.597 31.772 hybrid contribution -0.470 0.894 -0.981 1.408 sum -6.705 -16.866 24.615 30.583 Atomic orbital electron populations 1.23522 0.74846 1.05802 1.02131 1.86479 1.24936 1.32342 1.83764 1.24814 0.93549 0.81601 0.71627 1.90668 1.67721 1.37586 1.46054 1.21279 0.86237 0.83287 1.09379 1.45142 1.66774 1.11474 1.04924 1.21261 0.75620 0.89099 0.82295 1.90697 1.51828 1.69124 1.32315 1.21658 1.03876 0.91399 0.99224 1.21272 1.00441 0.96692 0.94841 1.21426 1.00172 0.94137 0.97410 1.19035 0.94410 0.95139 0.93061 1.21735 1.43208 0.99981 0.93047 0.91678 1.26088 0.95970 1.03116 0.95169 1.70134 1.49965 1.39480 0.98234 0.85378 0.78773 0.78640 0.77838 1.19513 1.20897 1.18430 1.17780 0.97327 0.96352 0.86800 1.21385 0.98354 0.97048 0.97802 1.21306 0.98906 0.99832 0.93312 1.21612 0.94274 0.96924 1.00300 1.21425 0.99820 0.95259 0.95937 1.21475 0.95747 1.01643 0.94702 0.84540 0.91806 0.93042 0.84876 0.81795 0.87837 0.86692 0.92932 0.93950 0.92613 0.91890 0.99335 0.99812 0.92816 0.87613 0.84349 0.83174 0.82532 0.83431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -7.05 10.57 -51.44 -0.54 -7.60 16 3 C 0.44 10.48 8.02 71.23 0.57 11.06 16 4 O -0.53 -16.49 16.18 21.96 0.36 -16.14 16 5 C 0.12 2.25 5.91 85.63 0.51 2.75 16 6 N -0.55 -12.87 2.02 -635.30 -1.28 -14.16 16 7 C 0.53 16.22 7.53 87.66 0.66 16.88 16 8 O -0.56 -21.69 15.61 -3.03 -0.05 -21.74 16 9 C -0.12 -3.64 4.36 29.85 0.13 -3.51 16 10 C -0.09 -3.65 4.52 30.59 0.14 -3.52 16 11 C -0.09 -4.05 5.15 30.59 0.16 -3.89 16 12 C 0.02 1.16 4.97 29.85 0.15 1.31 16 13 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 14 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 15 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 16 N -0.94 -59.70 13.29 21.45 0.28 -59.42 16 17 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 21 C 0.11 2.09 4.43 38.15 0.17 2.26 16 22 C -0.13 -2.63 8.44 22.39 0.19 -2.44 16 23 C -0.12 -1.81 10.04 22.25 0.22 -1.59 16 24 C -0.11 -1.32 10.04 22.29 0.22 -1.09 16 25 C -0.11 -1.12 10.04 22.25 0.22 -0.90 16 26 C -0.12 -1.56 9.63 22.39 0.22 -1.35 16 27 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 29 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 30 H 0.13 2.45 7.49 -2.39 -0.02 2.43 16 31 H 0.16 1.56 7.82 -2.39 -0.02 1.54 16 32 H 0.10 2.91 6.97 -2.39 -0.02 2.89 16 33 H 0.11 2.89 8.02 -2.39 -0.02 2.87 16 34 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 38 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 41 H 0.11 2.66 7.88 -2.91 -0.02 2.63 16 42 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 44 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 45 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -82.10 386.36 7.21 -74.89 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.96 Total: 10.83 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 5.45 Total: -14.09 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -1.00 Total: -73.57 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -0.24 Total: -45.47 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -82.10 7.21 -74.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808429710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.867 kcal (2) G-P(sol) polarization free energy of solvation -82.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds