Wall clock time and date at job start Tue Mar 31 2020 12:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41595 * 114.00234 * 2 1 4 4 C 1.34774 * 120.00405 * 89.99402 * 3 2 1 5 5 O 1.21281 * 120.00289 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.99981 * 359.97438 * 4 3 2 7 7 C 1.53003 * 109.47108 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.46705 * 180.02562 * 7 6 4 9 9 H 1.07998 * 120.00499 * 359.72414 * 8 7 6 10 10 C 1.37886 * 119.99720 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99673 * 359.72073 * 10 8 7 12 12 Si 1.86796 * 120.00131 * 179.72396 * 10 8 7 13 13 H 1.48505 * 109.47243 * 89.99774 * 12 10 8 14 14 H 1.48498 * 109.47224 * 209.99899 * 12 10 8 15 15 H 1.48498 * 109.47014 * 330.00230 * 12 10 8 16 16 C 1.46507 * 119.99794 * 269.99862 * 3 2 1 17 17 H 1.09001 * 109.59543 * 7.02608 * 16 3 2 18 18 C 1.52876 * 109.60169 * 127.34611 * 16 3 2 19 19 C 1.52002 * 110.88015 * 202.92866 * 18 16 3 20 20 C 1.51425 * 113.58059 * 292.69877 * 19 18 16 21 21 O 1.43144 * 110.94143 * 65.37104 * 20 19 18 22 22 C 1.36150 * 115.60189 * 273.24454 * 21 20 19 23 23 C 1.38902 * 119.79254 * 251.74931 * 22 21 20 24 24 C 1.38170 * 119.67278 * 177.75422 * 23 22 21 25 25 C 1.38285 * 120.23104 * 0.09544 * 24 23 22 26 26 C 1.38387 * 120.07389 * 0.38242 * 25 24 23 27 27 C 1.37942 * 120.35472 * 70.31821 * 22 21 20 28 28 H 1.09002 * 109.46828 * 60.00133 * 1 2 3 29 29 H 1.08995 * 109.47159 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47390 * 300.00665 * 1 2 3 31 31 H 1.09003 * 109.46475 * 60.00053 * 6 4 3 32 32 H 1.08994 * 109.46908 * 300.00191 * 6 4 3 33 33 H 1.08993 * 109.46862 * 60.00398 * 7 6 4 34 34 H 1.09003 * 109.46746 * 300.00226 * 7 6 4 35 35 H 0.97001 * 119.99688 * 179.97438 * 11 10 8 36 36 H 1.09004 * 109.21409 * 323.42046 * 18 16 3 37 37 H 1.08996 * 109.21424 * 82.74065 * 18 16 3 38 38 H 1.09005 * 108.68083 * 171.58882 * 19 18 16 39 39 H 1.08998 * 108.45267 * 53.64617 * 19 18 16 40 40 H 1.09000 * 109.18755 * 304.99271 * 20 19 18 41 41 H 1.08999 * 109.18302 * 185.74994 * 20 19 18 42 42 H 1.07999 * 120.16621 * 357.74495 * 23 22 21 43 43 H 1.08002 * 119.88338 * 180.02562 * 24 23 22 44 44 H 1.07997 * 119.96229 * 180.35963 * 25 24 23 45 45 H 1.08001 * 120.17997 * 179.84628 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.2790 1.9092 1.1671 5 8 2.7719 3.0174 1.1671 6 6 1.9719 1.2213 2.4723 7 6 2.3769 2.1294 3.6352 8 6 2.0704 1.4411 4.9402 9 1 1.6265 0.4565 4.9403 10 6 2.3518 2.0705 6.1343 11 7 2.8928 3.2692 6.1342 12 14 1.9647 1.2206 7.7521 13 1 3.1383 0.4194 8.1836 14 1 1.6549 2.2409 8.7856 15 1 0.7933 0.3257 7.5732 16 6 2.3030 1.9626 -1.2688 17 1 1.9035 1.3744 -2.0950 18 6 1.6691 3.3538 -1.2762 19 6 1.4585 3.8456 -2.6990 20 6 2.7489 4.1170 -3.4434 21 8 3.4879 2.9075 -3.6440 22 6 4.3201 2.5510 -2.6271 23 6 5.6951 2.6622 -2.7894 24 6 6.5356 2.3440 -1.7400 25 6 6.0121 1.9149 -0.5341 26 6 4.6426 1.7948 -0.3761 27 6 3.8042 2.1081 -1.4269 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.5297 0.2866 2.5303 32 1 0.9039 1.0112 2.5297 33 1 1.8195 3.0642 3.5773 34 1 3.4451 2.3390 3.5774 35 1 3.0905 3.7122 6.9742 36 1 0.7082 3.3129 -0.7633 37 1 2.3249 4.0495 -0.7528 38 1 0.8734 4.7648 -2.6676 39 1 0.8925 3.0907 -3.2447 40 1 3.3550 4.8156 -2.8667 41 1 2.5172 4.5601 -4.4119 42 1 6.1052 2.9956 -3.7312 43 1 7.6053 2.4296 -1.8623 44 1 6.6729 1.6729 0.2851 45 1 4.2320 1.4575 0.5641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812534870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:19 Heat of formation + Delta-G solvation = -36.092677 kcal Electronic energy + Delta-G solvation = -28098.605559 eV Core-core repulsion = 24276.976170 eV Total energy + Delta-G solvation = -3821.629389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.97529 -39.32598 -37.44696 -37.12015 -35.28185 -33.45893 -32.53037 -31.21561 -30.39698 -30.25133 -27.53866 -26.59879 -25.77651 -24.55897 -22.54631 -22.04848 -21.27727 -20.59354 -19.53289 -18.09216 -17.42374 -16.95732 -16.07645 -15.95201 -15.80025 -15.27351 -15.17453 -14.87529 -14.49816 -14.44358 -14.12899 -14.12624 -13.70584 -13.48890 -13.40891 -12.82057 -12.40248 -12.23377 -12.17696 -12.13725 -12.00546 -11.50423 -11.24615 -11.18500 -10.93554 -10.89956 -10.81096 -10.62173 -10.45111 -10.10678 -9.96873 -9.69001 -9.20993 -9.05051 -8.91338 -8.69816 -8.44979 -8.34075 -5.98402 -4.02573 1.25418 1.43285 1.98668 2.94357 3.32267 3.38499 3.41002 3.41664 3.95182 4.25153 4.47467 4.56750 4.72853 4.76633 4.83147 4.97841 5.09749 5.17340 5.19917 5.24073 5.27009 5.36873 5.44443 5.48150 5.52500 5.57389 5.63379 5.68771 5.70609 5.77397 5.91549 6.05593 6.16479 6.23340 6.30996 6.39049 6.42912 6.59024 6.73155 6.78530 6.84920 7.45032 7.67519 7.71490 7.80953 8.02993 8.33229 8.51602 9.05049 9.61141 11.12480 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.003721 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.553314 B = 7522.722351 C = 8208.228994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 O -0.139 6.139 3 N -0.487 5.487 4 C 0.519 3.481 5 O -0.502 6.502 6 C -0.125 4.125 7 C 0.037 3.963 8 C -0.526 4.526 9 H 0.056 0.944 10 C 0.059 3.941 11 N -0.890 5.890 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.196 3.804 17 H 0.102 0.898 18 C -0.131 4.131 19 C -0.148 4.148 20 C 0.064 3.936 21 O -0.329 6.329 22 C 0.097 3.903 23 C -0.138 4.138 24 C -0.108 4.108 25 C -0.125 4.125 26 C -0.070 4.070 27 C -0.114 4.114 28 H 0.048 0.952 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.023 0.977 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 -1.969 -20.759 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 O -0.143 6.143 3 N -0.268 5.268 4 C 0.312 3.688 5 O -0.376 6.376 6 C -0.165 4.165 7 C 0.000 4.000 8 C -0.565 4.565 9 H 0.074 0.926 10 C -0.143 4.143 11 N -0.528 5.528 12 Si 0.720 3.280 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.199 1.199 16 C 0.094 3.906 17 H 0.120 0.880 18 C -0.169 4.169 19 C -0.186 4.186 20 C -0.011 4.011 21 O -0.246 6.246 22 C 0.053 3.947 23 C -0.156 4.156 24 C -0.126 4.126 25 C -0.143 4.143 26 C -0.089 4.089 27 C -0.116 4.116 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.598 -1.471 -20.778 20.838 hybrid contribution -0.641 -0.412 1.111 1.347 sum -1.238 -1.884 -19.667 19.796 Atomic orbital electron populations 1.23390 0.82091 1.03685 1.01417 1.90632 1.19764 1.07143 1.96720 1.50645 1.60087 1.10195 1.05871 1.21802 0.76452 0.85654 0.84926 1.90745 1.42607 1.18777 1.85463 1.21907 1.02309 1.01272 0.91020 1.18932 0.97737 0.93937 0.89421 1.21195 1.41629 1.02747 0.90906 0.92595 1.25009 0.95192 0.94869 0.99188 1.69994 1.42750 1.13472 1.26599 0.86599 0.78685 0.79226 0.83504 1.20621 1.21226 1.19885 1.20151 0.91194 0.93414 0.85815 0.88011 1.21806 1.02142 0.96178 0.96799 1.21646 0.98396 1.02630 0.95943 1.22550 0.92072 0.85371 1.01102 1.86274 1.56753 1.42167 1.39419 1.18276 0.89310 0.99781 0.87285 1.21149 0.91918 1.02866 0.99701 1.21019 0.99549 0.99141 0.92868 1.21263 0.95297 1.00126 0.97643 1.21134 0.92989 0.96637 0.98101 1.20265 0.95570 1.01836 0.93931 0.93280 0.87759 0.92388 0.89651 0.90396 0.95903 0.95719 0.92951 0.90879 0.89073 0.90098 0.91227 0.92202 0.88446 0.85469 0.85717 0.85606 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 11.44 101.05 1.16 1.07 16 2 O -0.14 -2.00 10.83 -11.47 -0.12 -2.13 16 3 N -0.49 -7.78 2.46 -54.53 -0.13 -7.91 16 4 C 0.52 9.97 5.11 -10.99 -0.06 9.92 16 5 O -0.50 -10.92 12.27 5.56 0.07 -10.85 16 6 C -0.13 -2.60 4.95 -27.88 -0.14 -2.73 16 7 C 0.04 0.98 4.26 -27.88 -0.12 0.87 16 8 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 9 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 12 Si 0.89 21.54 29.54 -169.99 -5.02 16.51 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.20 2.84 2.61 -68.67 -0.18 2.66 16 17 H 0.10 1.36 7.87 -51.93 -0.41 0.95 16 18 C -0.13 -1.76 4.13 -27.30 -0.11 -1.87 16 19 C -0.15 -1.47 5.55 -28.03 -0.16 -1.63 16 20 C 0.06 0.64 6.49 36.36 0.24 0.88 16 21 O -0.33 -4.17 9.99 -20.22 -0.20 -4.37 16 22 C 0.10 1.36 5.61 -39.44 -0.22 1.14 16 23 C -0.14 -1.73 10.01 -39.36 -0.39 -2.13 16 24 C -0.11 -1.33 10.03 -39.59 -0.40 -1.73 16 25 C -0.13 -1.81 10.05 -39.51 -0.40 -2.21 16 26 C -0.07 -1.17 8.09 -39.60 -0.32 -1.49 16 27 C -0.11 -1.77 4.82 -104.34 -0.50 -2.27 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.67 7.13 -51.93 -0.37 0.30 16 31 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.08 1.50 7.13 -51.93 -0.37 1.13 16 33 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 37 H 0.09 1.47 6.59 -51.93 -0.34 1.12 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.64 8.00 -51.93 -0.42 0.22 16 40 H 0.06 0.63 7.90 -51.93 -0.41 0.22 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.13 2.42 4.92 -52.49 -0.26 2.16 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -32.85 362.17 -7.99 -40.84 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.76 Total: 1.83 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.01 Total: -13.04 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.60 Total: -34.24 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.26 Total: -17.36 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.85 -7.99 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812534870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.748 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds