Wall clock time and date at job start Tue Mar 31 2020 12:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41595 * 114.00234 * 2 1 4 4 C 1.34774 * 120.00405 * 89.99402 * 3 2 1 5 5 O 1.21281 * 120.00289 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.99981 * 359.97438 * 4 3 2 7 7 C 1.53003 * 109.47108 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.46705 * 180.02562 * 7 6 4 9 9 H 1.07998 * 120.00499 * 359.72414 * 8 7 6 10 10 C 1.37886 * 119.99720 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99673 * 359.72073 * 10 8 7 12 12 Si 1.86796 * 120.00131 * 179.72396 * 10 8 7 13 13 H 1.48505 * 109.47243 * 89.99774 * 12 10 8 14 14 H 1.48498 * 109.47224 * 209.99899 * 12 10 8 15 15 H 1.48498 * 109.47014 * 330.00230 * 12 10 8 16 16 C 1.46507 * 119.99794 * 269.99862 * 3 2 1 17 17 H 1.09001 * 109.59543 * 7.02608 * 16 3 2 18 18 C 1.52876 * 109.60169 * 127.34611 * 16 3 2 19 19 C 1.52002 * 110.88015 * 202.92866 * 18 16 3 20 20 C 1.51425 * 113.58059 * 292.69877 * 19 18 16 21 21 O 1.43144 * 110.94143 * 65.37104 * 20 19 18 22 22 C 1.36150 * 115.60189 * 273.24454 * 21 20 19 23 23 C 1.38902 * 119.79254 * 251.74931 * 22 21 20 24 24 C 1.38170 * 119.67278 * 177.75422 * 23 22 21 25 25 C 1.38285 * 120.23104 * 0.09544 * 24 23 22 26 26 C 1.38387 * 120.07389 * 0.38242 * 25 24 23 27 27 C 1.37942 * 120.35472 * 70.31821 * 22 21 20 28 28 H 1.09002 * 109.46828 * 60.00133 * 1 2 3 29 29 H 1.08995 * 109.47159 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47390 * 300.00665 * 1 2 3 31 31 H 1.09003 * 109.46475 * 60.00053 * 6 4 3 32 32 H 1.08994 * 109.46908 * 300.00191 * 6 4 3 33 33 H 1.08993 * 109.46862 * 60.00398 * 7 6 4 34 34 H 1.09003 * 109.46746 * 300.00226 * 7 6 4 35 35 H 0.97001 * 119.99688 * 179.97438 * 11 10 8 36 36 H 1.09004 * 109.21409 * 323.42046 * 18 16 3 37 37 H 1.08996 * 109.21424 * 82.74065 * 18 16 3 38 38 H 1.09005 * 108.68083 * 171.58882 * 19 18 16 39 39 H 1.08998 * 108.45267 * 53.64617 * 19 18 16 40 40 H 1.09000 * 109.18755 * 304.99271 * 20 19 18 41 41 H 1.08999 * 109.18302 * 185.74994 * 20 19 18 42 42 H 1.07999 * 120.16621 * 357.74495 * 23 22 21 43 43 H 1.08002 * 119.88338 * 180.02562 * 24 23 22 44 44 H 1.07997 * 119.96229 * 180.35963 * 25 24 23 45 45 H 1.08001 * 120.17997 * 179.84628 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.2790 1.9092 1.1671 5 8 2.7719 3.0174 1.1671 6 6 1.9719 1.2213 2.4723 7 6 2.3769 2.1294 3.6352 8 6 2.0704 1.4411 4.9402 9 1 1.6265 0.4565 4.9403 10 6 2.3518 2.0705 6.1343 11 7 2.8928 3.2692 6.1342 12 14 1.9647 1.2206 7.7521 13 1 3.1383 0.4194 8.1836 14 1 1.6549 2.2409 8.7856 15 1 0.7933 0.3257 7.5732 16 6 2.3030 1.9626 -1.2688 17 1 1.9035 1.3744 -2.0950 18 6 1.6691 3.3538 -1.2762 19 6 1.4585 3.8456 -2.6990 20 6 2.7489 4.1170 -3.4434 21 8 3.4879 2.9075 -3.6440 22 6 4.3201 2.5510 -2.6271 23 6 5.6951 2.6622 -2.7894 24 6 6.5356 2.3440 -1.7400 25 6 6.0121 1.9149 -0.5341 26 6 4.6426 1.7948 -0.3761 27 6 3.8042 2.1081 -1.4269 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.5297 0.2866 2.5303 32 1 0.9039 1.0112 2.5297 33 1 1.8195 3.0642 3.5773 34 1 3.4451 2.3390 3.5774 35 1 3.0905 3.7122 6.9742 36 1 0.7082 3.3129 -0.7633 37 1 2.3249 4.0495 -0.7528 38 1 0.8734 4.7648 -2.6676 39 1 0.8925 3.0907 -3.2447 40 1 3.3550 4.8156 -2.8667 41 1 2.5172 4.5601 -4.4119 42 1 6.1052 2.9956 -3.7312 43 1 7.6053 2.4296 -1.8623 44 1 6.6729 1.6729 0.2851 45 1 4.2320 1.4575 0.5641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812534870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:18 Heat of formation + Delta-G solvation = -55.619977 kcal Electronic energy + Delta-G solvation = -28099.452326 eV Core-core repulsion = 24276.976170 eV Total energy + Delta-G solvation = -3822.476156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.13462 -40.60349 -38.48091 -38.36964 -36.44157 -35.50548 -33.58052 -33.08819 -31.68186 -31.34455 -28.68764 -27.98553 -27.07835 -25.90367 -23.85216 -23.46617 -22.21312 -22.10236 -20.84327 -19.26400 -18.89957 -18.33732 -17.78682 -17.21348 -16.89222 -16.53103 -16.31674 -16.17334 -15.99261 -15.67637 -15.36192 -15.19432 -15.01948 -14.79368 -14.47483 -14.21619 -14.01129 -13.76089 -13.41567 -13.19775 -13.12012 -12.93970 -12.85755 -12.50714 -12.47977 -12.34883 -12.02835 -11.88163 -11.78576 -11.65997 -11.49247 -11.32335 -11.04785 -10.64386 -10.58379 -10.20082 -9.80693 -9.51131 -8.19768 -6.33547 0.19505 0.34495 0.77795 1.40976 1.43047 1.43709 1.54283 2.40438 2.42393 2.91279 3.03644 3.13319 3.51726 3.72831 3.77639 3.89323 3.94744 4.10303 4.15461 4.23242 4.32402 4.38802 4.40927 4.43300 4.47038 4.48507 4.54161 4.58978 4.68939 4.72804 4.77821 4.92260 4.96436 4.98106 5.02605 5.21194 5.26309 5.34027 5.45299 5.49713 5.58116 5.58410 5.74449 5.81664 6.15525 6.37166 6.46543 6.82405 7.03335 7.36374 8.92620 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.003721 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.553314 B = 7522.722351 C = 8208.228994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 O -0.149 6.149 3 N -0.478 5.478 4 C 0.524 3.476 5 O -0.538 6.538 6 C -0.114 4.114 7 C 0.048 3.952 8 C -0.545 4.545 9 H 0.071 0.929 10 C -0.002 4.002 11 N -0.934 5.934 12 Si 0.971 3.029 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.257 1.257 16 C 0.196 3.804 17 H 0.118 0.882 18 C -0.125 4.125 19 C -0.142 4.142 20 C 0.059 3.941 21 O -0.332 6.332 22 C 0.094 3.906 23 C -0.135 4.135 24 C -0.100 4.100 25 C -0.142 4.142 26 C -0.100 4.100 27 C -0.132 4.132 28 H 0.065 0.935 29 H 0.137 0.863 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.096 0.904 33 H -0.013 1.013 34 H -0.014 1.014 35 H 0.263 0.737 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.134 0.866 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.130 0.870 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.851 -3.173 -22.685 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 O -0.153 6.153 3 N -0.257 5.257 4 C 0.316 3.684 5 O -0.415 6.415 6 C -0.154 4.154 7 C 0.011 3.989 8 C -0.582 4.582 9 H 0.089 0.911 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.795 3.205 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.181 1.181 16 C 0.095 3.905 17 H 0.136 0.864 18 C -0.164 4.164 19 C -0.180 4.180 20 C -0.015 4.015 21 O -0.250 6.250 22 C 0.050 3.950 23 C -0.154 4.154 24 C -0.118 4.118 25 C -0.160 4.160 26 C -0.119 4.119 27 C -0.133 4.133 28 H 0.084 0.916 29 H 0.155 0.845 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.006 0.994 34 H 0.004 0.996 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.151 0.849 42 H 0.175 0.825 43 H 0.176 0.824 44 H 0.148 0.852 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.479 -2.713 -22.745 22.954 hybrid contribution -0.387 -0.041 1.633 1.678 sum -1.866 -2.754 -21.113 21.373 Atomic orbital electron populations 1.23674 0.79798 1.05881 1.01803 1.90611 1.22127 1.05767 1.96796 1.50329 1.59410 1.10516 1.05488 1.21281 0.76434 0.85198 0.85483 1.90731 1.44232 1.20288 1.86217 1.21625 1.03349 1.00151 0.90232 1.18663 0.94724 0.93637 0.91923 1.21647 1.41543 1.03401 0.91655 0.91116 1.26065 0.94719 0.95480 1.03674 1.70163 1.43982 1.15416 1.27828 0.85365 0.79121 0.78143 0.77907 1.19750 1.20928 1.18076 1.20359 0.91220 0.93978 0.84905 0.86439 1.21733 1.00751 0.94894 0.98989 1.21636 0.98966 1.03972 0.93423 1.22802 0.91474 0.84303 1.02887 1.86265 1.56834 1.43210 1.38648 1.18422 0.90264 0.99409 0.86943 1.21529 0.91340 1.01688 1.00794 1.21360 1.01308 0.97437 0.91663 1.21448 0.94603 1.00828 0.99082 1.21034 0.94395 0.98922 0.97537 1.20394 0.95829 1.02654 0.94467 0.91587 0.84527 0.93291 0.88903 0.88569 0.99427 0.99595 0.92789 0.91406 0.92439 0.88025 0.89598 0.93157 0.84870 0.82549 0.82357 0.85181 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.29 11.44 113.37 1.30 1.01 16 2 O -0.15 -4.22 10.83 -38.77 -0.42 -4.64 16 3 N -0.48 -15.64 2.46 -444.82 -1.09 -16.73 16 4 C 0.52 21.32 5.11 87.66 0.45 21.76 16 5 O -0.54 -25.34 12.27 -3.03 -0.04 -25.38 16 6 C -0.11 -4.92 4.95 29.85 0.15 -4.78 16 7 C 0.05 2.71 4.26 29.85 0.13 2.83 16 8 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 9 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 10 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 11 N -0.93 -58.97 13.29 21.45 0.28 -58.68 16 12 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 16 C 0.20 5.70 2.61 44.51 0.12 5.82 16 17 H 0.12 2.99 7.87 -2.39 -0.02 2.97 16 18 C -0.13 -3.38 4.13 30.22 0.12 -3.26 16 19 C -0.14 -2.54 5.55 29.75 0.17 -2.38 16 20 C 0.06 1.05 6.49 71.47 0.46 1.52 16 21 O -0.33 -7.68 9.99 -95.26 -0.95 -8.64 16 22 C 0.09 2.52 5.61 22.36 0.13 2.65 16 23 C -0.14 -3.14 10.01 22.41 0.22 -2.92 16 24 C -0.10 -2.34 10.03 22.26 0.22 -2.12 16 25 C -0.14 -4.22 10.05 22.32 0.22 -4.00 16 26 C -0.10 -3.54 8.09 22.26 0.18 -3.36 16 27 C -0.13 -4.15 4.82 -19.68 -0.09 -4.25 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.07 7.13 -2.39 -0.02 1.06 16 31 H 0.09 3.83 8.14 -2.39 -0.02 3.81 16 32 H 0.10 3.75 7.13 -2.39 -0.02 3.73 16 33 H -0.01 -0.79 8.10 -2.39 -0.02 -0.81 16 34 H -0.01 -0.91 8.10 -2.39 -0.02 -0.93 16 35 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 37 H 0.06 1.95 6.59 -2.39 -0.02 1.94 16 38 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.09 1.30 8.00 -2.39 -0.02 1.28 16 40 H 0.05 1.00 7.90 -2.39 -0.02 0.98 16 41 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 43 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 44 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 45 H 0.10 4.02 4.92 -2.91 -0.01 4.00 16 Total: -1.00 -75.82 362.17 5.26 -70.56 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.98 Total: 19.24 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 4.47 Total: -22.24 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -0.81 Total: -75.41 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -1.41 Total: -38.65 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -75.82 5.26 -70.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812534870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.939 kcal (2) G-P(sol) polarization free energy of solvation -75.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds