Wall clock time and date at job start Tue Mar 31 2020 12:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 N 1.41595 * 114.00419 * 2 1 4 4 C 1.34775 * 120.00086 * 270.00178 * 3 2 1 5 5 O 1.21282 * 120.00027 * 184.87907 * 4 3 2 6 6 C 1.50699 * 120.00223 * 4.88122 * 4 3 2 7 7 C 1.52999 * 109.47440 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.46975 * 179.97438 * 7 6 4 9 9 H 1.08004 * 120.00250 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99705 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00482 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99911 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.47216 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47092 * 120.00006 * 12 10 8 15 15 H 1.48502 * 109.47309 * 239.99745 * 12 10 8 16 16 C 1.46507 * 120.00091 * 89.99707 * 3 2 1 17 17 H 1.08996 * 109.72902 * 233.98724 * 16 3 2 18 18 C 1.52868 * 109.60042 * 113.58979 * 16 3 2 19 19 C 1.52140 * 110.82024 * 323.63700 * 18 16 3 20 20 C 1.51440 * 113.45530 * 292.38798 * 19 18 16 21 21 O 1.43150 * 110.91148 * 65.37647 * 20 19 18 22 22 C 1.36115 * 115.60666 * 273.31090 * 21 20 19 23 23 C 1.38922 * 119.78272 * 251.53499 * 22 21 20 24 24 C 1.38152 * 119.69142 * 178.76549 * 23 22 21 25 25 C 1.38290 * 120.24321 * 359.92139 * 24 23 22 26 26 C 1.38384 * 120.05952 * 359.84922 * 25 24 23 27 27 C 1.37953 * 120.41953 * 70.51568 * 22 21 20 28 28 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47073 * 299.99813 * 1 2 3 30 30 H 1.09001 * 109.47389 * 60.00170 * 1 2 3 31 31 H 1.09003 * 109.46917 * 300.00128 * 6 4 3 32 32 H 1.09005 * 109.46958 * 59.99502 * 6 4 3 33 33 H 1.08991 * 109.46982 * 300.00044 * 7 6 4 34 34 H 1.09005 * 109.46726 * 59.99833 * 7 6 4 35 35 H 0.96995 * 120.00842 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.21189 * 203.28924 * 18 16 3 37 37 H 1.09002 * 109.17526 * 83.95060 * 18 16 3 38 38 H 1.08998 * 108.69061 * 171.36284 * 19 18 16 39 39 H 1.08999 * 108.58680 * 53.33882 * 19 18 16 40 40 H 1.08993 * 109.19120 * 305.00453 * 20 19 18 41 41 H 1.09004 * 109.18692 * 185.74407 * 20 19 18 42 42 H 1.07998 * 120.14947 * 358.78288 * 23 22 21 43 43 H 1.07999 * 119.87977 * 179.64286 * 24 23 22 44 44 H 1.08003 * 119.97349 * 180.10942 * 25 24 23 45 45 H 1.08006 * 120.18730 * 180.40069 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.2791 1.9091 -1.1672 5 8 2.8527 2.9777 -1.1691 6 6 1.8727 1.2698 -2.4699 7 6 2.2980 2.1679 -3.6333 8 6 1.8922 1.5282 -4.9361 9 1 1.3824 0.5760 -4.9344 10 6 2.1727 2.1579 -6.1301 11 7 2.7948 3.3166 -6.1322 12 14 1.6703 1.3646 -7.7450 13 1 0.9903 0.0730 -7.4716 14 1 0.7426 2.2676 -8.4725 15 1 2.8781 1.1230 -8.5746 16 6 2.3029 1.9627 1.2688 17 1 1.8321 2.9456 1.2857 18 6 3.8158 2.1160 1.4248 19 6 4.5434 0.9073 0.8552 20 6 4.3078 -0.3644 1.6430 21 8 2.9361 -0.7665 1.5659 22 6 2.1072 -0.2107 2.4916 23 6 1.6071 -0.9907 3.5266 24 6 0.7866 -0.4186 4.4796 25 6 0.4648 0.9243 4.4063 26 6 0.9669 1.7022 3.3778 27 6 1.7776 1.1270 2.4204 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.3575 0.2981 -2.5645 32 1 0.7907 1.1393 -2.4887 33 1 1.8129 3.1393 -3.5385 34 1 3.3800 2.2987 -3.6146 35 1 2.9925 3.7595 -6.9722 36 1 4.0591 2.2153 2.4826 37 1 4.1413 3.0121 0.8964 38 1 5.6129 1.1173 0.8428 39 1 4.2072 0.7506 -0.1697 40 1 4.5731 -0.1940 2.6863 41 1 4.9369 -1.1577 1.2391 42 1 1.8587 -2.0392 3.5861 43 1 0.3913 -1.0235 5.2824 44 1 -0.1756 1.3674 5.1546 45 1 0.7222 2.7527 3.3221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812534873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:24 Heat of formation + Delta-G solvation = -33.896555 kcal Electronic energy + Delta-G solvation = -28485.305939 eV Core-core repulsion = 24663.771781 eV Total energy + Delta-G solvation = -3821.534158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96610 -39.11186 -37.50815 -36.86769 -35.23616 -33.39969 -32.09951 -31.31848 -30.82194 -30.15921 -27.43812 -26.44292 -25.70902 -24.65088 -22.91467 -21.92125 -21.24484 -20.25301 -19.43224 -18.07854 -17.19681 -16.71648 -16.43178 -15.84176 -15.75897 -15.33165 -15.20725 -14.69834 -14.40905 -14.24014 -14.07395 -13.92756 -13.74329 -13.60640 -13.32546 -12.92464 -12.60449 -12.28950 -12.13514 -12.09954 -11.83382 -11.51831 -11.27059 -11.08910 -10.92982 -10.74535 -10.69150 -10.55606 -10.25466 -9.95893 -9.87943 -9.62659 -9.21042 -9.09281 -8.93490 -8.69813 -8.54800 -8.29883 -5.94226 -3.97981 1.02342 1.11099 2.26269 3.10169 3.34224 3.34726 3.41365 3.45236 3.84192 4.19229 4.48945 4.60467 4.73522 4.79548 4.82682 4.95834 5.01532 5.11413 5.24513 5.33134 5.37704 5.40713 5.40910 5.43487 5.46738 5.56705 5.65992 5.73725 5.81366 5.88491 5.97777 6.11284 6.20170 6.25305 6.26864 6.32644 6.36632 6.40601 6.56684 6.74698 6.94833 7.52113 7.76640 7.85637 7.87908 8.08449 8.40050 8.63465 9.10180 9.65456 11.16813 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.003421 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.991849 B = 8181.581925 C = 8419.636156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 O -0.108 6.108 3 N -0.479 5.479 4 C 0.523 3.477 5 O -0.517 6.517 6 C -0.123 4.123 7 C 0.037 3.963 8 C -0.524 4.524 9 H 0.056 0.944 10 C 0.058 3.942 11 N -0.890 5.890 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.194 3.806 17 H 0.087 0.913 18 C -0.126 4.126 19 C -0.150 4.150 20 C 0.072 3.928 21 O -0.304 6.304 22 C 0.141 3.859 23 C -0.145 4.145 24 C -0.101 4.101 25 C -0.138 4.138 26 C -0.092 4.092 27 C -0.130 4.130 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.260 0.740 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -7.713 24.083 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 O -0.112 6.112 3 N -0.259 5.259 4 C 0.315 3.685 5 O -0.391 6.391 6 C -0.162 4.162 7 C -0.001 4.001 8 C -0.562 4.562 9 H 0.075 0.925 10 C -0.144 4.144 11 N -0.529 5.529 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.093 3.907 17 H 0.105 0.895 18 C -0.164 4.164 19 C -0.188 4.188 20 C -0.003 4.003 21 O -0.220 6.220 22 C 0.096 3.904 23 C -0.163 4.163 24 C -0.119 4.119 25 C -0.156 4.156 26 C -0.110 4.110 27 C -0.131 4.131 28 H 0.117 0.883 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.050 -7.284 23.780 24.955 hybrid contribution -0.626 -0.223 -0.742 0.996 sum -2.676 -7.506 23.038 24.377 Atomic orbital electron populations 1.23358 0.83452 1.03209 1.00941 1.90836 1.18363 1.05737 1.96279 1.50454 1.59689 1.10705 1.05077 1.21752 0.77591 0.84405 0.84748 1.90700 1.41210 1.21531 1.85679 1.21854 1.01639 1.01636 0.91109 1.18931 0.97568 0.94089 0.89490 1.21251 1.38017 1.05897 0.91039 0.92546 1.25016 0.95245 0.94928 0.99185 1.70002 1.41050 1.15459 1.26420 0.86546 0.78259 0.79394 0.83840 1.19720 1.21058 1.21011 1.20243 0.95894 0.93819 0.80779 0.89491 1.21710 0.93440 1.00011 1.01233 1.21591 1.00553 0.94205 1.02453 1.22471 0.81139 0.97308 0.99338 1.86438 1.17863 1.66263 1.51395 1.18381 0.93347 0.90349 0.88278 1.21314 1.00956 1.00715 0.93337 1.21031 0.97388 0.95109 0.98395 1.21108 1.01269 0.94153 0.99053 1.20947 0.96062 0.99980 0.94033 1.20215 1.00871 0.94657 0.97314 0.88304 0.93689 0.92793 0.89695 0.90568 0.95960 0.95785 0.93047 0.91396 0.89471 0.90944 0.90027 0.93280 0.88652 0.85358 0.85794 0.85846 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 10.92 101.05 1.10 0.96 16 2 O -0.11 -1.66 6.68 -35.52 -0.24 -1.90 16 3 N -0.48 -7.80 1.72 -54.52 -0.09 -7.89 16 4 C 0.52 10.48 6.34 -10.99 -0.07 10.41 16 5 O -0.52 -11.79 14.79 5.56 0.08 -11.71 16 6 C -0.12 -2.65 4.85 -27.88 -0.14 -2.78 16 7 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 8 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 9 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 12 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 C 0.19 2.71 2.67 -68.66 -0.18 2.53 16 17 H 0.09 1.22 7.93 -51.93 -0.41 0.81 16 18 C -0.13 -1.66 4.88 -27.24 -0.13 -1.79 16 19 C -0.15 -1.98 5.33 -27.96 -0.15 -2.13 16 20 C 0.07 0.83 6.49 36.37 0.24 1.06 16 21 O -0.30 -4.06 7.50 -44.15 -0.33 -4.39 16 22 C 0.14 1.70 4.37 -39.43 -0.17 1.53 16 23 C -0.14 -1.46 10.00 -39.36 -0.39 -1.85 16 24 C -0.10 -0.85 10.03 -39.59 -0.40 -1.25 16 25 C -0.14 -1.17 10.05 -39.51 -0.40 -1.57 16 26 C -0.09 -0.91 9.70 -39.61 -0.38 -1.30 16 27 C -0.13 -1.55 3.57 -104.33 -0.37 -1.92 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 30 H 0.05 0.72 6.89 -51.93 -0.36 0.37 16 31 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.08 1.54 6.90 -51.93 -0.36 1.18 16 33 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.07 0.76 7.89 -51.93 -0.41 0.35 16 37 H 0.09 1.30 7.33 -51.93 -0.38 0.92 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.35 6.01 -51.93 -0.31 1.03 16 40 H 0.05 0.49 7.90 -51.93 -0.41 0.08 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 44 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 45 H 0.13 1.07 7.99 -52.48 -0.42 0.65 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -33.58 358.15 -8.23 -41.81 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.79 Total: -0.37 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -1.98 Total: -11.01 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.64 Total: -34.71 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.49 Total: -18.00 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.58 -8.23 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812534873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.914 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds