Wall clock time and date at job start Tue Mar 31 2020 12:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 N 1.41595 * 114.00419 * 2 1 4 4 C 1.34775 * 120.00086 * 270.00178 * 3 2 1 5 5 O 1.21282 * 120.00027 * 184.87907 * 4 3 2 6 6 C 1.50699 * 120.00223 * 4.88122 * 4 3 2 7 7 C 1.52999 * 109.47440 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.46975 * 179.97438 * 7 6 4 9 9 H 1.08004 * 120.00250 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99705 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00482 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99911 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.47216 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47092 * 120.00006 * 12 10 8 15 15 H 1.48502 * 109.47309 * 239.99745 * 12 10 8 16 16 C 1.46507 * 120.00091 * 89.99707 * 3 2 1 17 17 H 1.08996 * 109.72902 * 233.98724 * 16 3 2 18 18 C 1.52868 * 109.60042 * 113.58979 * 16 3 2 19 19 C 1.52140 * 110.82024 * 323.63700 * 18 16 3 20 20 C 1.51440 * 113.45530 * 292.38798 * 19 18 16 21 21 O 1.43150 * 110.91148 * 65.37647 * 20 19 18 22 22 C 1.36115 * 115.60666 * 273.31090 * 21 20 19 23 23 C 1.38922 * 119.78272 * 251.53499 * 22 21 20 24 24 C 1.38152 * 119.69142 * 178.76549 * 23 22 21 25 25 C 1.38290 * 120.24321 * 359.92139 * 24 23 22 26 26 C 1.38384 * 120.05952 * 359.84922 * 25 24 23 27 27 C 1.37953 * 120.41953 * 70.51568 * 22 21 20 28 28 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47073 * 299.99813 * 1 2 3 30 30 H 1.09001 * 109.47389 * 60.00170 * 1 2 3 31 31 H 1.09003 * 109.46917 * 300.00128 * 6 4 3 32 32 H 1.09005 * 109.46958 * 59.99502 * 6 4 3 33 33 H 1.08991 * 109.46982 * 300.00044 * 7 6 4 34 34 H 1.09005 * 109.46726 * 59.99833 * 7 6 4 35 35 H 0.96995 * 120.00842 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.21189 * 203.28924 * 18 16 3 37 37 H 1.09002 * 109.17526 * 83.95060 * 18 16 3 38 38 H 1.08998 * 108.69061 * 171.36284 * 19 18 16 39 39 H 1.08999 * 108.58680 * 53.33882 * 19 18 16 40 40 H 1.08993 * 109.19120 * 305.00453 * 20 19 18 41 41 H 1.09004 * 109.18692 * 185.74407 * 20 19 18 42 42 H 1.07998 * 120.14947 * 358.78288 * 23 22 21 43 43 H 1.07999 * 119.87977 * 179.64286 * 24 23 22 44 44 H 1.08003 * 119.97349 * 180.10942 * 25 24 23 45 45 H 1.08006 * 120.18730 * 180.40069 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.2791 1.9091 -1.1672 5 8 2.8527 2.9777 -1.1691 6 6 1.8727 1.2698 -2.4699 7 6 2.2980 2.1679 -3.6333 8 6 1.8922 1.5282 -4.9361 9 1 1.3824 0.5760 -4.9344 10 6 2.1727 2.1579 -6.1301 11 7 2.7948 3.3166 -6.1322 12 14 1.6703 1.3646 -7.7450 13 1 0.9903 0.0730 -7.4716 14 1 0.7426 2.2676 -8.4725 15 1 2.8781 1.1230 -8.5746 16 6 2.3029 1.9627 1.2688 17 1 1.8321 2.9456 1.2857 18 6 3.8158 2.1160 1.4248 19 6 4.5434 0.9073 0.8552 20 6 4.3078 -0.3644 1.6430 21 8 2.9361 -0.7665 1.5659 22 6 2.1072 -0.2107 2.4916 23 6 1.6071 -0.9907 3.5266 24 6 0.7866 -0.4186 4.4796 25 6 0.4648 0.9243 4.4063 26 6 0.9669 1.7022 3.3778 27 6 1.7776 1.1270 2.4204 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.3575 0.2981 -2.5645 32 1 0.7907 1.1393 -2.4887 33 1 1.8129 3.1393 -3.5385 34 1 3.3800 2.2987 -3.6146 35 1 2.9925 3.7595 -6.9722 36 1 4.0591 2.2153 2.4826 37 1 4.1413 3.0121 0.8964 38 1 5.6129 1.1173 0.8428 39 1 4.2072 0.7506 -0.1697 40 1 4.5731 -0.1940 2.6863 41 1 4.9369 -1.1577 1.2391 42 1 1.8587 -2.0392 3.5861 43 1 0.3913 -1.0235 5.2824 44 1 -0.1756 1.3674 5.1546 45 1 0.7222 2.7527 3.3221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812534873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:23 Heat of formation + Delta-G solvation = -52.573541 kcal Electronic energy + Delta-G solvation = -28486.115834 eV Core-core repulsion = 24663.771781 eV Total energy + Delta-G solvation = -3822.344053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.98968 -40.46494 -38.32994 -38.20314 -36.38575 -35.51322 -33.14347 -33.06267 -32.10233 -31.08444 -28.54294 -27.90030 -27.11968 -25.88109 -23.89972 -23.49177 -22.11715 -21.61126 -20.83720 -19.13328 -18.84370 -17.94177 -17.67494 -17.46235 -16.94074 -16.46599 -16.19389 -16.15259 -15.73022 -15.58865 -15.29559 -15.11309 -14.92329 -14.73871 -14.37822 -14.21710 -13.99978 -13.75778 -13.45759 -13.31136 -12.98437 -12.86607 -12.72484 -12.47681 -12.38398 -12.25411 -12.01455 -11.75386 -11.67291 -11.67062 -11.40840 -11.29259 -10.88748 -10.64171 -10.58418 -10.05666 -9.78379 -9.38697 -8.19442 -6.33295 0.22483 0.37931 1.02872 1.41031 1.42393 1.50164 1.56006 2.40887 2.58320 2.93832 3.10965 3.13330 3.58190 3.75263 3.85432 3.96094 4.00387 4.18957 4.26229 4.30364 4.32139 4.41056 4.43135 4.49131 4.49547 4.58188 4.59663 4.63025 4.64638 4.71887 4.81575 4.93558 5.01629 5.07954 5.13121 5.23438 5.37887 5.45172 5.48104 5.57167 5.59196 5.62410 5.82375 5.87193 6.16246 6.47586 6.67365 6.83065 7.08656 7.36520 8.93338 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.003421 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.991849 B = 8181.581925 C = 8419.636156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 O -0.114 6.114 3 N -0.464 5.464 4 C 0.524 3.476 5 O -0.557 6.557 6 C -0.110 4.110 7 C 0.047 3.953 8 C -0.543 4.543 9 H 0.070 0.930 10 C -0.004 4.004 11 N -0.935 5.935 12 Si 0.973 3.027 13 H -0.256 1.256 14 H -0.278 1.278 15 H -0.279 1.279 16 C 0.190 3.810 17 H 0.081 0.919 18 C -0.123 4.123 19 C -0.148 4.148 20 C 0.074 3.926 21 O -0.323 6.323 22 C 0.123 3.877 23 C -0.149 4.149 24 C -0.092 4.092 25 C -0.132 4.132 26 C -0.097 4.097 27 C -0.143 4.143 28 H 0.126 0.874 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.093 0.907 33 H -0.014 1.014 34 H -0.015 1.015 35 H 0.264 0.736 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.139 0.861 43 H 0.154 0.846 44 H 0.151 0.849 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 -10.072 26.038 28.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 O -0.118 6.118 3 N -0.242 5.242 4 C 0.315 3.685 5 O -0.435 6.435 6 C -0.150 4.150 7 C 0.009 3.991 8 C -0.581 4.581 9 H 0.089 0.911 10 C -0.202 4.202 11 N -0.575 5.575 12 Si 0.797 3.203 13 H -0.179 1.179 14 H -0.204 1.204 15 H -0.204 1.204 16 C 0.089 3.911 17 H 0.099 0.901 18 C -0.161 4.161 19 C -0.186 4.186 20 C -0.001 4.001 21 O -0.239 6.239 22 C 0.079 3.921 23 C -0.167 4.167 24 C -0.110 4.110 25 C -0.150 4.150 26 C -0.115 4.115 27 C -0.144 4.144 28 H 0.144 0.856 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.004 0.996 34 H 0.004 0.996 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.157 0.843 43 H 0.172 0.828 44 H 0.169 0.831 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.752 -9.682 25.784 27.796 hybrid contribution -0.143 0.498 -1.222 1.327 sum -3.895 -9.184 24.562 26.511 Atomic orbital electron populations 1.23532 0.81831 1.04915 1.00909 1.90833 1.20023 1.04552 1.96350 1.50132 1.58495 1.10754 1.04847 1.21285 0.77640 0.84014 0.85534 1.90680 1.43113 1.23203 1.86514 1.21565 1.02550 1.00527 0.90355 1.18676 0.94699 0.93631 0.92056 1.21676 1.38150 1.06497 0.91755 0.91139 1.26097 0.94923 0.95380 1.03751 1.70167 1.42263 1.17284 1.27783 0.85284 0.78050 0.78868 0.78114 1.17912 1.20370 1.20439 1.20378 0.96428 0.93827 0.80434 0.90148 1.21668 0.93148 0.98961 1.02301 1.21586 1.01101 0.95372 1.00545 1.22516 0.80980 0.96456 1.00108 1.86404 1.18562 1.66529 1.52402 1.18585 0.93935 0.90606 0.89013 1.21503 1.01014 1.01162 0.93035 1.21406 0.95981 0.95341 0.98291 1.21446 1.00665 0.94142 0.98726 1.21147 0.95610 1.00782 0.93975 1.20055 1.02551 0.94595 0.97216 0.85635 0.92873 0.93602 0.88954 0.88915 0.99553 0.99633 0.92761 0.88895 0.92075 0.89851 0.93879 0.91327 0.87478 0.84268 0.82805 0.83101 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.34 10.92 113.37 1.24 0.90 16 2 O -0.11 -3.43 6.68 -15.78 -0.11 -3.54 16 3 N -0.46 -15.48 1.72 -444.80 -0.76 -16.25 16 4 C 0.52 22.14 6.34 87.66 0.56 22.70 16 5 O -0.56 -27.38 14.79 -3.04 -0.04 -27.43 16 6 C -0.11 -4.95 4.85 29.85 0.14 -4.81 16 7 C 0.05 2.71 4.26 29.85 0.13 2.84 16 8 C -0.54 -31.95 9.11 25.60 0.23 -31.72 16 9 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 10 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 11 N -0.94 -59.84 13.29 21.45 0.28 -59.55 16 12 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 13 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 C 0.19 5.39 2.67 44.51 0.12 5.51 16 17 H 0.08 2.35 7.93 -2.39 -0.02 2.33 16 18 C -0.12 -3.34 4.88 30.27 0.15 -3.19 16 19 C -0.15 -4.01 5.33 29.80 0.16 -3.85 16 20 C 0.07 1.63 6.49 71.47 0.46 2.09 16 21 O -0.32 -8.26 7.50 -71.87 -0.54 -8.80 16 22 C 0.12 2.73 4.37 22.37 0.10 2.82 16 23 C -0.15 -2.53 10.00 22.41 0.22 -2.30 16 24 C -0.09 -1.17 10.03 22.26 0.22 -0.95 16 25 C -0.13 -1.73 10.05 22.32 0.22 -1.51 16 26 C -0.10 -1.70 9.70 22.25 0.22 -1.48 16 27 C -0.14 -3.23 3.57 -19.67 -0.07 -3.30 16 28 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.05 1.20 7.45 -2.39 -0.02 1.18 16 30 H 0.05 1.18 6.89 -2.39 -0.02 1.17 16 31 H 0.09 3.97 8.14 -2.39 -0.02 3.95 16 32 H 0.09 3.80 6.90 -2.38 -0.02 3.79 16 33 H -0.01 -0.89 8.10 -2.39 -0.02 -0.91 16 34 H -0.01 -0.95 8.10 -2.38 -0.02 -0.97 16 35 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.09 2.02 7.89 -2.39 -0.02 2.00 16 37 H 0.06 1.96 7.33 -2.39 -0.02 1.94 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.50 6.01 -2.39 -0.01 1.48 16 40 H 0.07 1.24 7.90 -2.39 -0.02 1.22 16 41 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 43 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 44 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.14 2.04 7.99 -2.91 -0.02 2.02 16 Total: -1.00 -76.44 358.15 6.40 -70.03 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.98 Total: 14.33 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 4.57 Total: -16.01 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -0.48 Total: -75.80 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.69 Total: -39.76 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -76.44 6.40 -70.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812534873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.460 kcal (2) G-P(sol) polarization free energy of solvation -76.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds