Wall clock time and date at job start Tue Mar 31 2020 12:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00429 * 2 1 4 4 H 1.09008 * 109.46588 * 30.00501 * 3 2 1 5 5 C 1.52997 * 109.47507 * 270.00842 * 3 2 1 6 6 C 1.52995 * 109.47490 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47282 * 59.99354 * 6 5 3 8 8 C 1.52999 * 109.47355 * 300.00326 * 7 6 5 9 9 H 1.08999 * 109.47276 * 300.00159 * 8 7 6 10 10 C 1.50695 * 109.47224 * 179.97438 * 8 7 6 11 11 O 1.21293 * 120.00324 * 239.99948 * 10 8 7 12 12 N 1.34779 * 119.99729 * 60.00615 * 10 8 7 13 13 C 1.39924 * 120.00119 * 174.80049 * 12 10 8 14 14 C 1.38966 * 120.03375 * 326.13603 * 13 12 10 15 15 C 1.38156 * 120.06711 * 179.72066 * 14 13 12 16 16 C 1.38167 * 120.13963 * 0.55000 * 15 14 13 17 17 C 1.38913 * 120.06921 * 359.72467 * 16 15 14 18 18 O 1.35751 * 120.03443 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99878 * 185.89239 * 18 17 16 20 20 H 1.08000 * 120.00302 * 5.39981 * 19 18 17 21 21 C 1.38653 * 119.99662 * 185.41250 * 19 18 17 22 22 N 1.31553 * 120.00542 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99762 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47297 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47453 * 119.99645 * 23 21 19 26 26 H 1.48510 * 109.46813 * 239.99360 * 23 21 19 27 27 C 1.38715 * 120.04002 * 146.40778 * 13 12 10 28 28 C 1.53000 * 109.47448 * 150.00085 * 3 2 1 29 29 H 1.09002 * 109.47086 * 59.99457 * 1 2 3 30 30 H 1.09007 * 109.46398 * 299.99706 * 1 2 3 31 31 H 1.08997 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46918 * 299.99456 * 5 3 2 33 33 H 1.08996 * 109.47324 * 59.99237 * 5 3 2 34 34 H 1.09000 * 109.47524 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.47241 * 299.99863 * 6 5 3 36 36 H 1.09008 * 109.46886 * 60.00477 * 7 6 5 37 37 H 1.08996 * 109.47572 * 180.02562 * 7 6 5 38 38 H 0.97001 * 120.00264 * 354.79211 * 12 10 8 39 39 H 1.08004 * 119.97027 * 359.97438 * 14 13 12 40 40 H 1.07998 * 119.93584 * 180.27822 * 15 14 13 41 41 H 1.07998 * 119.97068 * 179.70132 * 16 15 14 42 42 H 0.96996 * 120.00478 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.06588 * 359.97438 * 27 13 12 44 44 H 1.09004 * 109.46915 * 300.00975 * 28 3 2 45 45 H 1.09004 * 109.46568 * 60.00219 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5140 5 6 2.2176 1.7715 -1.4424 6 6 2.8395 3.1694 -1.4424 7 6 4.1881 3.1277 -0.7210 8 6 3.9807 2.6617 0.7214 9 1 3.3151 3.3553 1.2352 10 6 5.3091 2.6201 1.4317 11 8 5.7180 1.5753 1.8927 12 7 6.0429 3.7439 1.5550 13 6 7.2227 3.7303 2.3072 14 6 7.3198 2.9228 3.4340 15 6 8.4864 2.9044 4.1739 16 6 9.5558 3.6967 3.8028 17 6 9.4629 4.5103 2.6807 18 8 10.5142 5.2881 2.3165 19 6 10.3174 6.1431 1.2927 20 1 9.3338 6.2496 0.8596 21 6 11.3779 6.8854 0.7958 22 7 12.5759 6.7559 1.3236 23 14 11.1051 8.0705 -0.6221 24 1 9.6785 8.0313 -1.0325 25 1 11.4592 9.4470 -0.1920 26 1 11.9609 7.6748 -1.7695 27 6 8.2946 4.5269 1.9321 28 6 3.3590 1.2632 0.7212 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 2.8829 1.0776 -1.9564 33 1 1.2568 1.8016 -1.9562 34 1 2.9867 3.5016 -2.4701 35 1 2.1739 3.8631 -0.9286 36 1 4.8537 2.4340 -1.2349 37 1 4.6309 4.1237 -0.7206 38 1 5.7532 4.5623 1.1221 39 1 6.4839 2.3059 3.7294 40 1 8.5611 2.2727 5.0467 41 1 10.4647 3.6838 4.3860 42 1 13.3177 7.2755 0.9762 43 1 8.2201 5.1582 1.0591 44 1 3.2112 0.9311 1.7489 45 1 4.0242 0.5692 0.2073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814406055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:23 Heat of formation + Delta-G solvation = -98.426696 kcal Electronic energy + Delta-G solvation = -26399.397528 eV Core-core repulsion = 22575.065133 eV Total energy + Delta-G solvation = -3824.332395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.64739 -39.28771 -38.51160 -36.74986 -36.17259 -34.25512 -32.26101 -31.41824 -30.48417 -29.24688 -28.42414 -26.76821 -25.35621 -24.21042 -22.68393 -21.86049 -21.71957 -20.41144 -19.79387 -18.05303 -17.86873 -17.11132 -16.45183 -15.81810 -15.57842 -15.39731 -15.28222 -15.02091 -14.69744 -14.37373 -14.25247 -13.92282 -13.70378 -13.56651 -13.41532 -12.98402 -12.80602 -12.58575 -12.35603 -12.06975 -11.79568 -11.68646 -11.53266 -11.39328 -11.15849 -11.00353 -10.95406 -10.84391 -10.82568 -10.77525 -10.45883 -9.91140 -9.77926 -9.59821 -9.34596 -8.82415 -7.73967 -7.16355 -6.46184 -4.05889 1.95606 2.36678 2.82831 3.09402 3.10392 3.12245 3.16368 3.51917 3.94259 4.31143 4.36712 4.54683 4.58601 4.72322 4.78811 4.88890 4.94694 5.02455 5.05390 5.08972 5.09294 5.15590 5.25439 5.27248 5.34113 5.59407 5.63527 5.70070 5.73049 5.81373 5.85337 5.98222 6.01304 6.05784 6.10177 6.24762 6.27772 6.63020 6.90902 6.96430 6.98702 7.11371 7.30484 7.41179 7.68797 7.80653 7.97965 8.30909 8.99225 9.69967 10.71990 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.002801 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.292699 B = 9994.244526 C =11457.490855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.090 3.910 4 H 0.061 0.939 5 C -0.143 4.143 6 C -0.114 4.114 7 C -0.117 4.117 8 C -0.101 4.101 9 H 0.100 0.900 10 C 0.515 3.485 11 O -0.516 6.516 12 N -0.669 5.669 13 C 0.180 3.820 14 C -0.206 4.206 15 C -0.063 4.063 16 C -0.201 4.201 17 C 0.168 3.832 18 O -0.176 6.176 19 C -0.391 4.391 20 H 0.090 0.910 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.940 3.060 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.256 4.256 28 C -0.096 4.096 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.406 0.594 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.269 0.731 43 H 0.130 0.870 44 H 0.077 0.923 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.055 -5.970 -4.483 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.033 3.967 4 H 0.079 0.921 5 C -0.181 4.181 6 C -0.151 4.151 7 C -0.155 4.155 8 C -0.123 4.123 9 H 0.118 0.882 10 C 0.302 3.698 11 O -0.391 6.391 12 N -0.314 5.314 13 C 0.087 3.913 14 C -0.227 4.227 15 C -0.082 4.082 16 C -0.220 4.220 17 C 0.114 3.886 18 O -0.080 6.080 19 C -0.468 4.468 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.202 1.202 27 C -0.278 4.278 28 C -0.134 4.134 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.241 0.759 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.147 0.853 44 H 0.096 0.904 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.233 -6.781 -4.115 23.605 hybrid contribution -0.509 1.286 -1.064 1.745 sum -22.742 -5.495 -5.179 23.963 Atomic orbital electron populations 1.22783 0.81274 1.02696 0.99822 1.87936 1.19432 1.27798 1.95037 1.22140 0.94799 0.84393 0.95394 0.92134 1.22069 1.01455 0.97348 0.97206 1.21470 0.96096 0.96527 1.01050 1.21619 0.98278 1.02171 0.93407 1.21281 0.94414 0.99425 0.97133 0.88232 1.20575 0.86008 0.83402 0.79839 1.90735 1.70964 1.29899 1.47452 1.43529 1.23342 1.13002 1.51478 1.17416 0.85136 0.97834 0.90887 1.20530 0.99784 1.05468 0.96872 1.20529 0.92293 0.97086 0.98267 1.20253 1.00434 1.02385 0.98955 1.19088 0.87339 0.89902 0.92293 1.84023 1.31527 1.44923 1.47503 1.21307 0.96671 1.17537 1.11247 0.89234 1.25281 0.94369 0.98250 0.98635 1.70041 1.00007 1.39487 1.40129 0.85663 0.78680 0.79363 0.79764 1.19210 1.20144 1.20166 1.20816 0.93655 1.08597 1.04703 1.21358 0.94740 0.95358 1.01979 0.94177 0.94067 0.89694 0.90789 0.91809 0.90981 0.91602 0.90728 0.90887 0.75921 0.86427 0.86616 0.86376 0.92059 0.85272 0.90387 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.91 10.35 -35.23 -0.36 -4.27 16 3 C 0.09 0.79 2.61 -26.73 -0.07 0.72 16 4 H 0.06 0.45 7.79 -51.92 -0.40 0.05 16 5 C -0.14 -1.09 5.54 -26.74 -0.15 -1.24 16 6 C -0.11 -0.77 5.92 -26.73 -0.16 -0.92 16 7 C -0.12 -0.98 5.10 -26.73 -0.14 -1.12 16 8 C -0.10 -1.00 2.54 -91.75 -0.23 -1.23 16 9 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 10 C 0.51 7.40 6.89 -10.99 -0.08 7.32 16 11 O -0.52 -9.44 13.70 5.55 0.08 -9.36 16 12 N -0.67 -9.87 5.26 -9.88 -0.05 -9.93 16 13 C 0.18 3.44 6.27 -83.72 -0.52 2.91 16 14 C -0.21 -3.97 8.65 -39.34 -0.34 -4.31 16 15 C -0.06 -1.20 10.03 -39.64 -0.40 -1.59 16 16 C -0.20 -4.33 9.99 -39.36 -0.39 -4.72 16 17 C 0.17 4.08 6.64 -39.13 -0.26 3.82 16 18 O -0.18 -5.00 9.76 0.04 0.00 -5.00 16 19 C -0.39 -10.77 9.44 30.89 0.29 -10.48 16 20 H 0.09 2.26 5.30 -52.49 -0.28 1.98 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -25.11 13.67 55.48 0.76 -24.35 16 23 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 27 C -0.26 -5.53 9.04 -39.21 -0.35 -5.88 16 28 C -0.10 -1.03 4.14 -26.70 -0.11 -1.14 16 29 H 0.04 0.23 7.87 -51.93 -0.41 -0.18 16 30 H 0.04 0.24 8.09 -51.93 -0.42 -0.18 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.07 0.55 7.45 -51.93 -0.39 0.16 16 38 H 0.41 4.68 8.09 -40.82 -0.33 4.35 16 39 H 0.12 2.22 6.45 -52.48 -0.34 1.88 16 40 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 41 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 42 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.13 2.72 5.71 -52.49 -0.30 2.42 16 44 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 45 H 0.08 1.02 8.10 -51.93 -0.42 0.59 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -33.34 366.83 -7.62 -40.96 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.63 Total: 6.89 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -1.91 Total: -15.60 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.71 Total: -34.28 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.29 Total: -18.64 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.34 -7.62 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814406055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.464 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds