Wall clock time and date at job start Tue Mar 31 2020 12:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00429 * 2 1 4 4 H 1.09008 * 109.46588 * 30.00501 * 3 2 1 5 5 C 1.52997 * 109.47507 * 270.00842 * 3 2 1 6 6 C 1.52995 * 109.47490 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47282 * 59.99354 * 6 5 3 8 8 C 1.52999 * 109.47355 * 300.00326 * 7 6 5 9 9 H 1.08999 * 109.47276 * 300.00159 * 8 7 6 10 10 C 1.50695 * 109.47224 * 179.97438 * 8 7 6 11 11 O 1.21293 * 120.00324 * 239.99948 * 10 8 7 12 12 N 1.34779 * 119.99729 * 60.00615 * 10 8 7 13 13 C 1.39924 * 120.00119 * 174.80049 * 12 10 8 14 14 C 1.38966 * 120.03375 * 326.13603 * 13 12 10 15 15 C 1.38156 * 120.06711 * 179.72066 * 14 13 12 16 16 C 1.38167 * 120.13963 * 0.55000 * 15 14 13 17 17 C 1.38913 * 120.06921 * 359.72467 * 16 15 14 18 18 O 1.35751 * 120.03443 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99878 * 185.89239 * 18 17 16 20 20 H 1.08000 * 120.00302 * 5.39981 * 19 18 17 21 21 C 1.38653 * 119.99662 * 185.41250 * 19 18 17 22 22 N 1.31553 * 120.00542 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99762 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47297 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47453 * 119.99645 * 23 21 19 26 26 H 1.48510 * 109.46813 * 239.99360 * 23 21 19 27 27 C 1.38715 * 120.04002 * 146.40778 * 13 12 10 28 28 C 1.53000 * 109.47448 * 150.00085 * 3 2 1 29 29 H 1.09002 * 109.47086 * 59.99457 * 1 2 3 30 30 H 1.09007 * 109.46398 * 299.99706 * 1 2 3 31 31 H 1.08997 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46918 * 299.99456 * 5 3 2 33 33 H 1.08996 * 109.47324 * 59.99237 * 5 3 2 34 34 H 1.09000 * 109.47524 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.47241 * 299.99863 * 6 5 3 36 36 H 1.09008 * 109.46886 * 60.00477 * 7 6 5 37 37 H 1.08996 * 109.47572 * 180.02562 * 7 6 5 38 38 H 0.97001 * 120.00264 * 354.79211 * 12 10 8 39 39 H 1.08004 * 119.97027 * 359.97438 * 14 13 12 40 40 H 1.07998 * 119.93584 * 180.27822 * 15 14 13 41 41 H 1.07998 * 119.97068 * 179.70132 * 16 15 14 42 42 H 0.96996 * 120.00478 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.06588 * 359.97438 * 27 13 12 44 44 H 1.09004 * 109.46915 * 300.00975 * 28 3 2 45 45 H 1.09004 * 109.46568 * 60.00219 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5140 5 6 2.2176 1.7715 -1.4424 6 6 2.8395 3.1694 -1.4424 7 6 4.1881 3.1277 -0.7210 8 6 3.9807 2.6617 0.7214 9 1 3.3151 3.3553 1.2352 10 6 5.3091 2.6201 1.4317 11 8 5.7180 1.5753 1.8927 12 7 6.0429 3.7439 1.5550 13 6 7.2227 3.7303 2.3072 14 6 7.3198 2.9228 3.4340 15 6 8.4864 2.9044 4.1739 16 6 9.5558 3.6967 3.8028 17 6 9.4629 4.5103 2.6807 18 8 10.5142 5.2881 2.3165 19 6 10.3174 6.1431 1.2927 20 1 9.3338 6.2496 0.8596 21 6 11.3779 6.8854 0.7958 22 7 12.5759 6.7559 1.3236 23 14 11.1051 8.0705 -0.6221 24 1 9.6785 8.0313 -1.0325 25 1 11.4592 9.4470 -0.1920 26 1 11.9609 7.6748 -1.7695 27 6 8.2946 4.5269 1.9321 28 6 3.3590 1.2632 0.7212 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 2.8829 1.0776 -1.9564 33 1 1.2568 1.8016 -1.9562 34 1 2.9867 3.5016 -2.4701 35 1 2.1739 3.8631 -0.9286 36 1 4.8537 2.4340 -1.2349 37 1 4.6309 4.1237 -0.7206 38 1 5.7532 4.5623 1.1221 39 1 6.4839 2.3059 3.7294 40 1 8.5611 2.2727 5.0467 41 1 10.4647 3.6838 4.3860 42 1 13.3177 7.2755 0.9762 43 1 8.2201 5.1582 1.0591 44 1 3.2112 0.9311 1.7489 45 1 4.0242 0.5692 0.2073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814406055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:23 Heat of formation + Delta-G solvation = -120.153588 kcal Electronic energy + Delta-G solvation = -26400.339676 eV Core-core repulsion = 22575.065133 eV Total energy + Delta-G solvation = -3825.274544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83842 -40.63307 -39.71457 -38.18840 -37.15153 -35.69226 -34.23173 -32.25631 -31.31319 -30.78978 -29.96240 -27.32243 -27.31067 -25.26184 -23.52921 -23.34767 -23.01353 -21.45235 -20.83385 -19.79092 -19.34264 -18.39961 -17.33239 -17.12864 -16.83739 -16.57244 -16.27943 -16.05995 -15.91213 -15.88933 -15.50709 -15.34978 -15.01835 -14.68533 -14.54414 -14.30005 -14.02410 -13.58119 -13.47832 -13.33275 -13.17101 -12.80304 -12.63602 -12.61769 -12.48299 -12.37661 -12.07749 -12.03354 -11.66764 -11.51025 -11.49802 -11.43552 -11.27686 -10.84309 -10.71405 -10.37766 -9.36793 -8.88625 -8.46005 -6.14841 0.38371 0.68166 1.36785 1.44793 1.55232 1.58609 1.97713 2.18469 2.82003 2.83566 3.16665 3.43930 3.49232 3.67433 3.86232 4.02420 4.10640 4.12378 4.20760 4.30013 4.33440 4.38638 4.41326 4.44830 4.53939 4.57050 4.63342 4.63632 4.74498 4.87493 4.96317 5.01383 5.04953 5.08815 5.11481 5.15738 5.20564 5.28711 5.38197 5.42391 5.47778 5.65602 5.66285 6.01855 6.15904 6.32105 6.44969 6.98290 7.10814 7.77829 8.77292 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.002801 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.292699 B = 9994.244526 C =11457.490855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.093 3.907 4 H 0.082 0.918 5 C -0.141 4.141 6 C -0.107 4.107 7 C -0.117 4.117 8 C -0.087 4.087 9 H 0.134 0.866 10 C 0.514 3.486 11 O -0.558 6.558 12 N -0.660 5.660 13 C 0.187 3.813 14 C -0.202 4.202 15 C -0.052 4.052 16 C -0.215 4.215 17 C 0.134 3.866 18 O -0.227 6.227 19 C -0.411 4.411 20 H 0.105 0.895 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.246 1.246 25 H -0.269 1.269 26 H -0.272 1.272 27 C -0.259 4.259 28 C -0.095 4.095 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.423 0.577 39 H 0.129 0.871 40 H 0.153 0.847 41 H 0.119 0.881 42 H 0.272 0.728 43 H 0.131 0.869 44 H 0.063 0.937 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.721 -5.203 -5.636 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.035 3.965 4 H 0.100 0.900 5 C -0.179 4.179 6 C -0.144 4.144 7 C -0.155 4.155 8 C -0.108 4.108 9 H 0.152 0.848 10 C 0.304 3.696 11 O -0.435 6.435 12 N -0.306 5.306 13 C 0.092 3.908 14 C -0.222 4.222 15 C -0.071 4.071 16 C -0.235 4.235 17 C 0.083 3.917 18 O -0.133 6.133 19 C -0.487 4.487 20 H 0.122 0.878 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.169 1.169 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.281 4.281 28 C -0.133 4.133 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.262 0.738 39 H 0.146 0.854 40 H 0.170 0.830 41 H 0.137 0.863 42 H 0.081 0.919 43 H 0.149 0.851 44 H 0.081 0.919 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.975 -6.026 -5.269 27.180 hybrid contribution 0.439 0.794 -0.564 1.069 sum -25.536 -5.231 -5.834 26.711 Atomic orbital electron populations 1.22965 0.79582 1.03611 1.00963 1.87898 1.21404 1.28780 1.95238 1.22156 0.93784 0.84494 0.96050 0.89970 1.22054 1.01926 0.97580 0.96307 1.21455 0.95035 0.96228 1.01701 1.21660 0.99411 1.02311 0.92098 1.21290 0.91822 0.99774 0.97906 0.84824 1.21451 0.86985 0.82286 0.78921 1.90719 1.72112 1.31404 1.49257 1.43523 1.21854 1.14259 1.50933 1.17465 0.85950 0.96395 0.90942 1.20847 1.00068 1.04770 0.96543 1.20911 0.91074 0.96134 0.98955 1.20478 1.01539 1.02817 0.98651 1.19612 0.87703 0.90688 0.93728 1.83991 1.33655 1.46744 1.48884 1.21855 0.97672 1.17928 1.11285 0.87806 1.26621 0.93788 1.00120 1.01620 1.70192 1.01321 1.41665 1.42686 0.84521 0.79723 0.76408 0.75506 1.16867 1.19449 1.19729 1.20851 0.93571 1.09122 1.04528 1.21312 0.95723 0.95218 1.01046 0.92797 0.93060 0.89087 0.92581 0.90317 0.89922 0.89396 0.92644 0.89399 0.73803 0.85351 0.82967 0.86320 0.91866 0.85117 0.91866 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.51 16 2 O -0.41 -7.85 10.35 -148.98 -1.54 -9.39 16 3 C 0.09 1.41 2.61 30.59 0.08 1.49 16 4 H 0.08 0.90 7.79 -2.38 -0.02 0.88 16 5 C -0.14 -1.78 5.54 30.59 0.17 -1.61 16 6 C -0.11 -1.03 5.92 30.59 0.18 -0.85 16 7 C -0.12 -1.64 5.10 30.59 0.16 -1.48 16 8 C -0.09 -1.49 2.54 -11.52 -0.03 -1.51 16 9 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 10 C 0.51 13.85 6.89 87.66 0.60 14.46 16 11 O -0.56 -19.98 13.70 -3.07 -0.04 -20.02 16 12 N -0.66 -18.05 5.26 -303.55 -1.60 -19.65 16 13 C 0.19 6.90 6.27 38.14 0.24 7.14 16 14 C -0.20 -7.46 8.65 22.42 0.19 -7.27 16 15 C -0.05 -1.92 10.03 22.23 0.22 -1.70 16 16 C -0.22 -9.42 9.99 22.41 0.22 -9.20 16 17 C 0.13 6.70 6.64 22.56 0.15 6.85 16 18 O -0.23 -13.49 9.76 -22.76 -0.22 -13.71 16 19 C -0.41 -23.35 9.44 67.92 0.64 -22.71 16 20 H 0.10 5.31 5.30 -2.91 -0.02 5.29 16 21 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 22 N -0.92 -55.98 13.67 21.61 0.30 -55.68 16 23 Si 1.02 41.54 29.55 68.60 2.03 43.56 16 24 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 25 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 26 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 27 C -0.26 -11.20 9.04 22.51 0.20 -10.99 16 28 C -0.09 -1.91 4.14 30.61 0.13 -1.79 16 29 H 0.05 0.45 7.87 -2.39 -0.02 0.43 16 30 H 0.05 0.47 8.09 -2.38 -0.02 0.45 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.08 0.78 7.87 -2.39 -0.02 0.76 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.09 0.99 7.45 -2.39 -0.02 0.97 16 38 H 0.42 8.51 8.09 -92.71 -0.75 7.76 16 39 H 0.13 4.56 6.45 -2.91 -0.02 4.54 16 40 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 42 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.13 5.50 5.71 -2.91 -0.02 5.48 16 44 H 0.06 1.44 8.10 -2.38 -0.02 1.42 16 45 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 Total: -1.00 -77.14 366.83 4.03 -73.12 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.25 Total: 30.30 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 4.86 Total: -28.53 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -1.30 Total: -75.33 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -1.81 Total: -43.12 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -77.14 4.03 -73.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814406055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.038 kcal (2) G-P(sol) polarization free energy of solvation -77.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds