Wall clock time and date at job start Tue Mar 31 2020 12:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00467 * 2 1 4 4 O 1.20834 * 119.99885 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00372 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.78444 * 300.48900 * 5 3 2 7 7 C 1.52896 * 109.63161 * 60.97859 * 5 3 2 8 8 C 1.50715 * 109.96320 * 170.04020 * 7 5 3 9 9 C 1.38677 * 118.48249 * 163.27197 * 8 7 5 10 10 C 1.38042 * 120.34881 * 179.78027 * 9 8 7 11 11 C 1.38260 * 119.82466 * 0.04208 * 10 9 8 12 12 C 1.38017 * 119.87224 * 0.05447 * 11 10 9 13 13 C 1.37827 * 121.66822 * 343.22152 * 8 7 5 14 14 C 1.50626 * 121.85076 * 0.34165 * 13 8 7 15 15 N 1.46631 * 110.48095 * 342.48334 * 14 13 8 16 16 C 1.46901 * 111.00361 * 289.15358 * 15 14 13 17 17 C 1.53001 * 109.46965 * 285.01782 * 16 15 14 18 18 O 1.42895 * 109.47425 * 67.49107 * 17 16 15 19 19 C 1.42898 * 114.00330 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47266 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00073 * 359.97438 * 20 19 18 22 22 C 1.37884 * 120.00030 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99580 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 119.99871 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47485 * 89.99653 * 24 22 20 26 26 H 1.48502 * 109.47140 * 209.99670 * 24 22 20 27 27 H 1.48499 * 109.47292 * 329.99516 * 24 22 20 28 28 H 1.09003 * 109.46966 * 299.99883 * 1 2 3 29 29 H 1.08994 * 109.47549 * 59.99844 * 1 2 3 30 30 H 1.09000 * 109.47369 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.38306 * 290.19202 * 7 5 3 32 32 H 1.09000 * 109.38423 * 49.98922 * 7 5 3 33 33 H 1.07994 * 119.83003 * 359.83681 * 9 8 7 34 34 H 1.07992 * 120.08774 * 180.02562 * 10 9 8 35 35 H 1.08000 * 120.06369 * 180.02562 * 11 10 9 36 36 H 1.07995 * 119.81606 * 179.97438 * 12 11 10 37 37 H 1.09005 * 109.29882 * 222.18159 * 14 13 8 38 38 H 1.08997 * 109.31092 * 102.80042 * 14 13 8 39 39 H 1.08994 * 109.47107 * 165.01337 * 16 15 14 40 40 H 1.09006 * 109.46750 * 45.01550 * 16 15 14 41 41 H 1.08996 * 109.47064 * 187.49196 * 17 16 15 42 42 H 1.09002 * 109.46760 * 307.49001 * 17 16 15 43 43 H 1.09004 * 109.46367 * 299.99905 * 19 18 17 44 44 H 1.08998 * 109.47601 * 59.99662 * 19 18 17 45 45 H 0.97004 * 119.99820 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9624 0.7742 0.8830 7 6 4.1154 0.6042 -1.2602 8 6 5.5895 0.8883 -1.3935 9 6 6.3401 0.0994 -2.2523 10 6 7.6925 0.3286 -2.4072 11 6 8.3021 1.3496 -1.7019 12 6 7.5564 2.1340 -0.8454 13 6 6.1973 1.9045 -0.6881 14 6 5.4269 2.7842 0.2613 15 7 3.9876 2.6849 -0.0005 16 6 3.6366 3.3392 -1.2680 17 6 3.6676 4.8577 -1.0837 18 8 5.0129 5.2828 -0.8573 19 6 5.1535 6.6926 -0.6710 20 6 6.6050 7.0268 -0.4421 21 1 7.3461 6.2411 -0.4389 22 6 6.9869 8.3355 -0.2359 23 7 6.0845 9.2922 -0.2394 24 14 8.7860 8.7496 0.0485 25 1 9.4429 9.0241 -1.2548 26 1 8.8864 9.9507 0.9160 27 1 9.4592 7.6034 0.7104 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.9588 -0.4725 -1.1944 32 1 3.5929 0.9932 -2.1341 33 1 5.8639 -0.6979 -2.8035 34 1 8.2728 -0.2880 -3.0775 35 1 9.3598 1.5326 -1.8205 36 1 8.0336 2.9310 -0.2945 37 1 5.7458 3.8186 0.1331 38 1 5.6291 2.4725 1.2860 39 1 2.6364 3.0302 -1.5716 40 1 4.3545 3.0517 -2.0363 41 1 3.2801 5.3405 -1.9808 42 1 3.0508 5.1324 -0.2280 43 1 4.7967 7.2138 -1.5594 44 1 4.5677 7.0051 0.1934 45 1 6.3532 10.2129 -0.0947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815012157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:11 Heat of formation + Delta-G solvation = -93.612366 kcal Electronic energy + Delta-G solvation = -27635.117878 eV Core-core repulsion = 23810.994248 eV Total energy + Delta-G solvation = -3824.123630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.15617 -39.83768 -37.63611 -36.54346 -36.02724 -32.99066 -32.57951 -31.37130 -30.23815 -28.78175 -27.78109 -26.88866 -24.61909 -24.23652 -22.32578 -22.05776 -21.85947 -21.15824 -19.10324 -17.68128 -17.02818 -16.60739 -16.40748 -16.17831 -15.79788 -15.39218 -15.09880 -15.04121 -14.59790 -14.38015 -13.94194 -13.76250 -13.65610 -13.36782 -13.17257 -12.94991 -12.68850 -12.44815 -12.22082 -11.91699 -11.80391 -11.62242 -11.43923 -11.29172 -11.10115 -10.95205 -10.89713 -10.79692 -10.65481 -10.44080 -10.25524 -9.90316 -9.06628 -8.79753 -8.65446 -8.44588 -8.24849 -8.08499 -6.08574 -4.10281 1.42071 1.48986 2.13087 2.46302 3.30675 3.35971 3.40036 3.82649 3.95745 4.35732 4.47389 4.62795 4.84502 4.88999 4.91249 4.96249 4.97762 4.99795 5.09888 5.15058 5.28008 5.32406 5.38714 5.45513 5.56435 5.56985 5.70510 5.78213 5.90468 6.03495 6.09760 6.13349 6.17198 6.23989 6.44934 6.50714 6.53945 6.63018 6.80048 7.06822 7.10705 7.19639 7.24554 7.49718 7.71332 7.80400 8.18771 8.61056 9.02791 9.54326 11.02944 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.004120 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.236767 B = 6794.418427 C = 8693.778161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.465 3.535 4 O -0.480 6.480 5 C 0.091 3.909 6 H 0.122 0.878 7 C -0.102 4.102 8 C -0.088 4.088 9 C -0.118 4.118 10 C -0.127 4.127 11 C -0.119 4.119 12 C -0.102 4.102 13 C -0.093 4.093 14 C 0.074 3.926 15 N -0.501 5.501 16 C 0.056 3.944 17 C 0.071 3.929 18 O -0.394 6.394 19 C 0.195 3.805 20 C -0.512 4.512 21 H 0.065 0.935 22 C 0.056 3.944 23 N -0.897 5.897 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.272 1.272 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.128 0.872 37 H 0.145 0.855 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.050 0.950 43 H 0.003 0.997 44 H 0.006 0.994 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 -22.241 -1.742 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.306 3.694 4 O -0.365 6.365 5 C -0.020 4.020 6 H 0.139 0.861 7 C -0.140 4.140 8 C -0.089 4.089 9 C -0.136 4.136 10 C -0.145 4.145 11 C -0.137 4.137 12 C -0.120 4.120 13 C -0.094 4.094 14 C -0.052 4.052 15 N -0.223 5.223 16 C -0.072 4.072 17 C -0.007 4.007 18 O -0.314 6.314 19 C 0.121 3.879 20 C -0.550 4.550 21 H 0.083 0.917 22 C -0.145 4.145 23 N -0.537 5.537 24 Si 0.733 3.267 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.196 1.196 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.162 0.838 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.021 0.979 44 H 0.024 0.976 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.565 -21.587 -1.316 22.332 hybrid contribution 0.861 0.186 -0.607 1.070 sum -4.703 -21.402 -1.923 21.997 Atomic orbital electron populations 1.23239 0.76428 1.03474 1.02642 1.86490 1.23308 1.33640 1.84497 1.23562 0.91570 0.81406 0.72911 1.90695 1.66522 1.36037 1.43206 1.21325 0.87407 0.92593 1.00628 0.86062 1.20979 0.93069 1.02017 0.97982 1.19325 0.94472 0.96468 0.98601 1.20938 0.94172 0.99665 0.98846 1.21005 0.94771 0.98556 1.00199 1.21116 0.99911 0.95742 0.96951 1.21184 0.93429 0.99073 0.98361 1.20459 0.94988 0.95699 0.98299 1.21753 0.83619 1.03219 0.96644 1.62359 1.15834 1.09398 1.34699 1.22305 1.00479 0.94604 0.89790 1.22185 0.86868 0.92318 0.99297 1.87687 1.23971 1.27241 1.92516 1.20183 0.97403 0.75260 0.95067 1.21027 0.92290 0.92818 1.48898 0.91669 1.24941 0.98213 0.95951 0.95378 1.69969 1.33380 1.00450 1.49859 0.86380 0.84254 0.77949 0.78148 1.20571 1.21137 1.19636 0.91845 0.91958 0.88234 0.89169 0.90125 0.86502 0.86422 0.86184 0.85361 0.83824 0.89716 0.90064 0.93466 0.94199 0.93183 0.97911 0.97598 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.87 10.51 -39.24 -0.41 -4.29 16 3 C 0.46 6.03 6.78 36.01 0.24 6.27 16 4 O -0.48 -7.68 14.41 -18.76 -0.27 -7.95 16 5 C 0.09 1.13 2.71 -68.77 -0.19 0.94 16 6 H 0.12 1.34 8.05 -51.93 -0.42 0.92 16 7 C -0.10 -1.13 4.44 -27.93 -0.12 -1.26 16 8 C -0.09 -1.14 5.09 -104.60 -0.53 -1.67 16 9 C -0.12 -1.37 9.66 -39.49 -0.38 -1.75 16 10 C -0.13 -1.47 10.05 -39.65 -0.40 -1.87 16 11 C -0.12 -1.51 10.05 -39.65 -0.40 -1.91 16 12 C -0.10 -1.48 9.65 -39.48 -0.38 -1.86 16 13 C -0.09 -1.35 5.09 -104.63 -0.53 -1.89 16 14 C 0.07 1.17 5.42 -5.16 -0.03 1.14 16 15 N -0.50 -7.80 4.42 -229.59 -1.01 -8.81 16 16 C 0.06 0.92 3.79 -3.82 -0.01 0.91 16 17 C 0.07 1.41 6.24 37.16 0.23 1.64 16 18 O -0.39 -9.22 7.37 -35.23 -0.26 -9.48 16 19 C 0.19 5.32 5.69 36.00 0.20 5.52 16 20 C -0.51 -14.75 9.43 -34.44 -0.32 -15.08 16 21 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 24 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.92 7.15 -51.93 -0.37 0.55 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 37 H 0.14 2.79 4.99 -51.93 -0.26 2.53 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.28 5.95 -51.93 -0.31 0.97 16 40 H 0.05 0.80 6.24 -51.93 -0.32 0.48 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 44 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -32.53 364.95 -9.12 -41.65 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.72 Total: 0.90 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.65 Total: -7.99 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.28 Total: -34.99 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.94 Total: -21.71 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.53 -9.12 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815012157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.962 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds