Wall clock time and date at job start Tue Mar 31 2020 12:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00467 * 2 1 4 4 O 1.20834 * 119.99885 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00372 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.78444 * 300.48900 * 5 3 2 7 7 C 1.52896 * 109.63161 * 60.97859 * 5 3 2 8 8 C 1.50715 * 109.96320 * 170.04020 * 7 5 3 9 9 C 1.38677 * 118.48249 * 163.27197 * 8 7 5 10 10 C 1.38042 * 120.34881 * 179.78027 * 9 8 7 11 11 C 1.38260 * 119.82466 * 0.04208 * 10 9 8 12 12 C 1.38017 * 119.87224 * 0.05447 * 11 10 9 13 13 C 1.37827 * 121.66822 * 343.22152 * 8 7 5 14 14 C 1.50626 * 121.85076 * 0.34165 * 13 8 7 15 15 N 1.46631 * 110.48095 * 342.48334 * 14 13 8 16 16 C 1.46901 * 111.00361 * 289.15358 * 15 14 13 17 17 C 1.53001 * 109.46965 * 285.01782 * 16 15 14 18 18 O 1.42895 * 109.47425 * 67.49107 * 17 16 15 19 19 C 1.42898 * 114.00330 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47266 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00073 * 359.97438 * 20 19 18 22 22 C 1.37884 * 120.00030 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99580 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 119.99871 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47485 * 89.99653 * 24 22 20 26 26 H 1.48502 * 109.47140 * 209.99670 * 24 22 20 27 27 H 1.48499 * 109.47292 * 329.99516 * 24 22 20 28 28 H 1.09003 * 109.46966 * 299.99883 * 1 2 3 29 29 H 1.08994 * 109.47549 * 59.99844 * 1 2 3 30 30 H 1.09000 * 109.47369 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.38306 * 290.19202 * 7 5 3 32 32 H 1.09000 * 109.38423 * 49.98922 * 7 5 3 33 33 H 1.07994 * 119.83003 * 359.83681 * 9 8 7 34 34 H 1.07992 * 120.08774 * 180.02562 * 10 9 8 35 35 H 1.08000 * 120.06369 * 180.02562 * 11 10 9 36 36 H 1.07995 * 119.81606 * 179.97438 * 12 11 10 37 37 H 1.09005 * 109.29882 * 222.18159 * 14 13 8 38 38 H 1.08997 * 109.31092 * 102.80042 * 14 13 8 39 39 H 1.08994 * 109.47107 * 165.01337 * 16 15 14 40 40 H 1.09006 * 109.46750 * 45.01550 * 16 15 14 41 41 H 1.08996 * 109.47064 * 187.49196 * 17 16 15 42 42 H 1.09002 * 109.46760 * 307.49001 * 17 16 15 43 43 H 1.09004 * 109.46367 * 299.99905 * 19 18 17 44 44 H 1.08998 * 109.47601 * 59.99662 * 19 18 17 45 45 H 0.97004 * 119.99820 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9624 0.7742 0.8830 7 6 4.1154 0.6042 -1.2602 8 6 5.5895 0.8883 -1.3935 9 6 6.3401 0.0994 -2.2523 10 6 7.6925 0.3286 -2.4072 11 6 8.3021 1.3496 -1.7019 12 6 7.5564 2.1340 -0.8454 13 6 6.1973 1.9045 -0.6881 14 6 5.4269 2.7842 0.2613 15 7 3.9876 2.6849 -0.0005 16 6 3.6366 3.3392 -1.2680 17 6 3.6676 4.8577 -1.0837 18 8 5.0129 5.2828 -0.8573 19 6 5.1535 6.6926 -0.6710 20 6 6.6050 7.0268 -0.4421 21 1 7.3461 6.2411 -0.4389 22 6 6.9869 8.3355 -0.2359 23 7 6.0845 9.2922 -0.2394 24 14 8.7860 8.7496 0.0485 25 1 9.4429 9.0241 -1.2548 26 1 8.8864 9.9507 0.9160 27 1 9.4592 7.6034 0.7104 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.9588 -0.4725 -1.1944 32 1 3.5929 0.9932 -2.1341 33 1 5.8639 -0.6979 -2.8035 34 1 8.2728 -0.2880 -3.0775 35 1 9.3598 1.5326 -1.8205 36 1 8.0336 2.9310 -0.2945 37 1 5.7458 3.8186 0.1331 38 1 5.6291 2.4725 1.2860 39 1 2.6364 3.0302 -1.5716 40 1 4.3545 3.0517 -2.0363 41 1 3.2801 5.3405 -1.9808 42 1 3.0508 5.1324 -0.2280 43 1 4.7967 7.2138 -1.5594 44 1 4.5677 7.0051 0.1934 45 1 6.3532 10.2129 -0.0947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815012157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:10 Heat of formation + Delta-G solvation = -113.465655 kcal Electronic energy + Delta-G solvation = -27635.978781 eV Core-core repulsion = 23810.994248 eV Total energy + Delta-G solvation = -3824.984533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.20211 -40.83273 -38.95468 -37.97746 -37.19570 -34.95236 -33.86090 -32.55638 -31.36427 -30.13872 -28.94894 -28.48163 -25.63943 -25.48698 -24.42377 -23.24473 -23.06875 -22.12113 -20.21496 -18.72941 -18.55465 -18.09074 -17.60127 -17.42205 -17.19573 -16.72404 -16.52993 -16.14204 -16.07640 -15.76133 -15.14378 -15.04172 -15.00785 -14.59267 -14.33068 -13.99502 -13.82049 -13.67383 -13.54424 -13.29146 -13.04444 -12.98206 -12.83456 -12.63145 -12.57658 -12.41523 -12.31493 -12.13609 -11.92783 -11.78435 -11.73866 -11.25637 -11.21769 -10.84730 -10.20559 -9.62806 -9.45847 -9.41764 -8.30279 -6.42265 0.44790 0.50652 1.12813 1.39917 1.42860 1.54599 1.56385 2.34732 2.78326 2.86458 3.03873 3.15607 3.56218 3.68130 3.82331 3.94158 4.05274 4.06887 4.16788 4.27714 4.30016 4.34801 4.36406 4.46554 4.51842 4.57641 4.65605 4.66419 4.71793 4.74168 4.81271 4.83686 4.93874 5.10287 5.15567 5.19564 5.28255 5.33961 5.55632 5.56339 5.65284 5.66473 5.89324 5.98191 5.99611 6.15486 6.53444 6.74550 6.82620 7.29157 8.82386 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.004120 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.236767 B = 6794.418427 C = 8693.778161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.472 3.528 4 O -0.518 6.518 5 C 0.090 3.910 6 H 0.139 0.861 7 C -0.094 4.094 8 C -0.093 4.093 9 C -0.116 4.116 10 C -0.125 4.125 11 C -0.127 4.127 12 C -0.127 4.127 13 C -0.112 4.112 14 C 0.082 3.918 15 N -0.517 5.517 16 C 0.074 3.926 17 C 0.065 3.935 18 O -0.391 6.391 19 C 0.209 3.791 20 C -0.538 4.538 21 H 0.065 0.935 22 C 0.005 3.995 23 N -0.933 5.933 24 Si 0.982 3.018 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.261 1.261 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.136 0.864 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.037 0.963 43 H -0.019 1.019 44 H -0.019 1.019 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 -25.163 -2.551 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.314 3.686 4 O -0.405 6.405 5 C -0.019 4.019 6 H 0.156 0.844 7 C -0.132 4.132 8 C -0.093 4.093 9 C -0.134 4.134 10 C -0.143 4.143 11 C -0.145 4.145 12 C -0.146 4.146 13 C -0.114 4.114 14 C -0.045 4.045 15 N -0.240 5.240 16 C -0.054 4.054 17 C -0.013 4.013 18 O -0.311 6.311 19 C 0.134 3.866 20 C -0.576 4.576 21 H 0.084 0.916 22 C -0.194 4.194 23 N -0.573 5.573 24 Si 0.805 3.195 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.185 1.185 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.139 0.861 32 H 0.098 0.902 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.153 0.847 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.055 0.945 43 H -0.002 1.002 44 H -0.001 1.001 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.739 -24.554 -2.127 25.097 hybrid contribution 0.491 0.999 -0.356 1.169 sum -4.247 -23.555 -2.484 24.063 Atomic orbital electron populations 1.23552 0.74710 1.05776 1.02390 1.86477 1.24884 1.32011 1.83771 1.23589 0.91614 0.81525 0.71868 1.90690 1.67282 1.37378 1.45186 1.21411 0.87437 0.90677 1.02377 0.84386 1.20972 0.91731 1.03657 0.96834 1.19523 0.95425 0.95990 0.98367 1.21314 0.94218 0.99762 0.98083 1.21395 0.95179 0.97967 0.99711 1.21356 1.00707 0.95832 0.96565 1.21227 0.93949 0.99740 0.99675 1.20370 0.94991 0.96723 0.99273 1.21455 0.84068 1.01231 0.97765 1.62240 1.15760 1.11956 1.34009 1.22066 1.00951 0.91948 0.90401 1.22417 0.84966 0.95044 0.98847 1.87749 1.26164 1.24730 1.92465 1.19801 0.96723 0.77197 0.92850 1.21334 0.92837 0.93515 1.49909 0.91630 1.25971 1.03559 0.95463 0.94367 1.70092 1.35983 1.01047 1.50130 0.85201 0.77733 0.78056 0.78551 1.19433 1.20217 1.18489 0.92346 0.92080 0.84632 0.86058 0.90164 0.83374 0.83437 0.84704 0.86993 0.87993 0.88965 0.88907 0.93727 0.93821 0.94456 1.00160 1.00143 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -6.71 10.51 -51.35 -0.54 -7.25 16 3 C 0.47 11.58 6.78 71.24 0.48 12.07 16 4 O -0.52 -16.43 14.41 21.94 0.32 -16.12 16 5 C 0.09 2.13 2.71 44.08 0.12 2.25 16 6 H 0.14 2.78 8.05 -2.39 -0.02 2.77 16 7 C -0.09 -1.83 4.44 29.82 0.13 -1.70 16 8 C -0.09 -2.19 5.09 -19.85 -0.10 -2.29 16 9 C -0.12 -2.29 9.66 22.33 0.22 -2.08 16 10 C -0.12 -2.50 10.05 22.23 0.22 -2.28 16 11 C -0.13 -3.06 10.05 22.22 0.22 -2.83 16 12 C -0.13 -3.75 9.65 22.34 0.22 -3.54 16 13 C -0.11 -3.27 5.09 -19.87 -0.10 -3.37 16 14 C 0.08 2.68 5.42 85.58 0.46 3.14 16 15 N -0.52 -16.31 4.42 -880.30 -3.89 -20.20 16 16 C 0.07 2.50 3.79 86.30 0.33 2.82 16 17 C 0.06 2.69 6.24 71.98 0.45 3.14 16 18 O -0.39 -19.40 7.37 -148.98 -1.10 -20.50 16 19 C 0.21 12.09 5.69 71.24 0.41 12.50 16 20 C -0.54 -32.14 9.43 25.60 0.24 -31.90 16 21 H 0.07 3.82 7.81 -2.91 -0.02 3.79 16 22 C 0.00 0.27 5.46 84.66 0.46 0.73 16 23 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 24 Si 0.98 44.72 29.54 68.60 2.03 46.74 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 27 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 28 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 29 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 30 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.61 7.15 -2.39 -0.02 1.60 16 33 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.11 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.10 4.24 4.99 -2.38 -0.01 4.23 16 38 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.09 2.93 5.95 -2.39 -0.01 2.91 16 40 H 0.04 1.53 6.24 -2.38 -0.01 1.51 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 43 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 44 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 45 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -72.81 364.95 3.04 -69.77 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.98 Total: 16.28 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 4.96 Total: -11.75 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -3.61 Total: -77.18 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -1.32 Total: -43.87 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -72.81 3.04 -69.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815012157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.693 kcal (2) G-P(sol) polarization free energy of solvation -72.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds