Wall clock time and date at job start Tue Mar 31 2020 12:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00021 * 2 1 4 4 O 1.20831 * 119.99751 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00060 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47297 * 180.02562 * 5 3 2 7 7 H 1.08996 * 110.65690 * 308.19946 * 6 5 3 8 8 C 1.54603 * 110.74578 * 184.99847 * 6 5 3 9 9 N 1.47908 * 102.63144 * 267.26849 * 8 6 5 10 10 C 1.46898 * 111.00189 * 94.67858 * 9 8 6 11 11 C 1.52995 * 109.47008 * 169.99932 * 10 9 8 12 12 O 1.42902 * 109.47230 * 64.99881 * 11 10 9 13 13 C 1.42898 * 114.00186 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47171 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46999 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46942 * 119.99666 * 18 16 14 21 21 H 1.48504 * 109.46979 * 239.99580 * 18 16 14 22 22 C 1.40040 * 107.90774 * 332.84159 * 9 8 6 23 23 C 1.39407 * 129.94229 * 198.07805 * 22 9 8 24 24 C 1.37907 * 120.19671 * 180.34179 * 23 22 9 25 25 C 1.38313 * 120.26648 * 359.93788 * 24 23 22 26 26 C 1.38300 * 119.87951 * 359.89924 * 25 24 23 27 27 C 1.37920 * 120.08125 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.47598 * 59.99775 * 1 2 3 29 29 H 1.09003 * 109.47566 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46794 * 299.99525 * 1 2 3 31 31 H 1.08996 * 109.47652 * 59.99742 * 5 3 2 32 32 H 1.09004 * 109.47063 * 299.99831 * 5 3 2 33 33 H 1.08994 * 110.77972 * 148.97843 * 8 6 5 34 34 H 1.09006 * 110.77230 * 25.54845 * 8 6 5 35 35 H 1.08999 * 109.47210 * 49.99724 * 10 9 8 36 36 H 1.09004 * 109.46885 * 289.99815 * 10 9 8 37 37 H 1.09001 * 109.47081 * 305.00090 * 11 10 9 38 38 H 1.08999 * 109.47384 * 184.99783 * 11 10 9 39 39 H 1.09002 * 109.47259 * 300.00293 * 13 12 11 40 40 H 1.09001 * 109.47074 * 60.00315 * 13 12 11 41 41 H 0.97000 * 120.00333 * 179.97438 * 17 16 14 42 42 H 1.07993 * 119.90141 * 0.29646 * 23 22 9 43 43 H 1.08000 * 119.86430 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.05668 * 179.87229 * 25 24 23 45 45 H 1.07996 * 119.95640 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 1 3.5040 3.2902 -0.8007 8 6 5.5365 2.8589 -0.1264 9 7 5.9740 2.9154 1.2854 10 6 6.3416 1.5806 1.7765 11 6 7.0189 1.7084 3.1424 12 8 6.0810 2.2161 4.0935 13 6 6.6153 2.3737 5.4095 14 6 5.5456 2.9113 6.3248 15 1 4.5566 3.1121 5.9402 16 6 5.8296 3.1469 7.6533 17 7 7.0338 2.9019 8.1218 18 14 4.5035 3.8125 8.7881 19 1 3.2454 4.0014 8.0220 20 1 4.2700 2.8501 9.8947 21 1 4.9410 5.1158 9.3497 22 6 4.9255 3.4565 2.0398 23 6 4.9384 4.0208 3.3145 24 6 3.7705 4.4919 3.8764 25 6 2.5786 4.4091 3.1794 26 6 2.5583 3.8537 1.9130 27 6 3.7239 3.3825 1.3459 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.9557 0.7809 -0.8907 32 1 3.9563 0.7806 0.8892 33 1 5.8128 3.7720 -0.6536 34 1 5.9511 1.9827 -0.6249 35 1 7.0288 1.1111 1.0726 36 1 5.4446 0.9687 1.8715 37 1 7.8648 2.3916 3.0659 38 1 7.3710 0.7291 3.4664 39 1 6.9587 1.4080 5.7803 40 1 7.4530 3.0706 5.3804 41 1 7.2338 3.0680 9.0564 42 1 5.8657 4.0887 3.8638 43 1 3.7866 4.9277 4.8644 44 1 1.6656 4.7772 3.6235 45 1 1.6283 3.7881 1.3678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815070940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:43 Heat of formation + Delta-G solvation = -76.034592 kcal Electronic energy + Delta-G solvation = -28128.309757 eV Core-core repulsion = 24304.948357 eV Total energy + Delta-G solvation = -3823.361400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.10553 -40.07428 -36.94317 -36.59565 -36.32018 -33.31004 -32.60015 -30.28319 -29.86320 -28.65474 -27.86299 -26.91320 -25.72244 -22.63276 -22.43615 -22.18815 -21.40337 -20.24559 -19.93087 -17.73191 -16.86423 -16.83765 -16.47284 -15.95334 -15.84774 -15.46987 -15.33111 -14.72984 -14.35315 -14.16036 -13.96186 -13.61098 -13.33781 -13.20626 -13.10568 -12.56529 -12.47932 -12.17954 -12.07956 -12.01448 -11.72335 -11.56568 -11.32810 -11.16953 -10.91684 -10.85575 -10.80648 -10.75073 -10.57519 -10.51939 -10.03888 -9.90346 -9.10401 -8.87935 -8.81109 -8.24386 -7.88284 -7.34860 -6.11073 -4.11893 1.91320 2.13615 2.17642 2.60289 3.28018 3.35634 3.40709 3.93122 4.29702 4.38326 4.54519 4.62715 4.72988 4.91677 4.93099 5.00981 5.12828 5.19260 5.22819 5.26157 5.31322 5.37729 5.40750 5.65476 5.70433 5.73434 5.84003 5.94814 6.00469 6.08663 6.16224 6.26396 6.29155 6.38742 6.45941 6.76055 6.96631 7.08049 7.11006 7.25248 7.40707 7.43591 7.46770 7.69342 7.81225 7.89219 8.14733 8.54547 9.02338 9.53068 11.00599 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.004241 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.998515 B = 6600.838335 C = 7345.977473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.497 6.497 5 C -0.106 4.106 6 C -0.064 4.064 7 H 0.093 0.907 8 C 0.056 3.944 9 N -0.488 5.488 10 C 0.058 3.942 11 C 0.058 3.942 12 O -0.381 6.381 13 C 0.191 3.809 14 C -0.509 4.509 15 H 0.073 0.927 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.085 3.915 23 C -0.035 4.035 24 C -0.105 4.105 25 C -0.140 4.140 26 C -0.101 4.101 27 C -0.145 4.145 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.002 0.998 40 H 0.005 0.995 41 H 0.262 0.738 42 H 0.146 0.854 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 -4.093 -18.545 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.305 3.695 4 O -0.384 6.384 5 C -0.144 4.144 6 C -0.084 4.084 7 H 0.112 0.888 8 C -0.072 4.072 9 N -0.206 5.206 10 C -0.067 4.067 11 C -0.020 4.020 12 O -0.301 6.301 13 C 0.117 3.883 14 C -0.548 4.548 15 H 0.091 0.909 16 C -0.144 4.144 17 N -0.537 5.537 18 Si 0.727 3.273 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.010 4.010 23 C -0.054 4.054 24 C -0.123 4.123 25 C -0.158 4.158 26 C -0.119 4.119 27 C -0.148 4.148 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.020 0.980 40 H 0.023 0.977 41 H 0.072 0.928 42 H 0.164 0.836 43 H 0.142 0.858 44 H 0.130 0.870 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.542 -3.474 -18.387 19.823 hybrid contribution -1.206 -0.365 0.900 1.548 sum -7.748 -3.839 -17.488 19.509 Atomic orbital electron populations 1.23233 0.76488 1.03511 1.02521 1.86505 1.23382 1.33803 1.84348 1.23733 0.92148 0.81260 0.72329 1.90613 1.67166 1.36068 1.44553 1.21597 0.87911 0.99127 1.05717 1.21099 0.97384 0.92787 0.97096 0.88833 1.23201 0.91243 1.02883 0.89843 1.60192 1.37490 1.21500 1.01428 1.22410 0.99602 0.88547 0.96166 1.22270 0.93073 0.97758 0.88910 1.88130 1.37310 1.83975 1.20723 1.20183 0.95083 0.95408 0.77664 1.21172 0.97967 1.42652 0.92975 0.90929 1.24928 0.95721 0.95793 0.97937 1.69970 1.19855 1.48814 1.15110 0.86410 0.81823 0.78544 0.80559 1.19372 1.20992 1.20883 1.19324 0.88155 0.99131 0.94432 1.20912 1.00062 0.92946 0.91472 1.21046 0.92170 0.99543 0.99565 1.21033 0.97920 1.01938 0.94947 1.20458 0.97124 0.99090 0.95256 1.20551 0.94228 1.03843 0.96159 0.92058 0.88287 0.91800 0.87534 0.87407 0.89002 0.89953 0.89887 0.93705 0.93422 0.94011 0.97984 0.97701 0.92815 0.83617 0.85834 0.87039 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.25 10.57 -39.26 -0.41 -4.66 16 3 C 0.46 5.90 7.77 36.00 0.28 6.18 16 4 O -0.50 -7.40 12.59 -18.75 -0.24 -7.64 16 5 C -0.11 -1.16 5.10 -27.88 -0.14 -1.30 16 6 C -0.06 -0.80 2.61 -90.50 -0.24 -1.03 16 7 H 0.09 1.13 7.88 -51.93 -0.41 0.72 16 8 C 0.06 0.63 6.56 -2.43 -0.02 0.61 16 9 N -0.49 -7.38 5.06 -169.02 -0.85 -8.24 16 10 C 0.06 0.84 5.18 -3.83 -0.02 0.82 16 11 C 0.06 1.02 6.21 37.16 0.23 1.25 16 12 O -0.38 -8.46 5.23 -35.23 -0.18 -8.65 16 13 C 0.19 4.93 5.00 36.01 0.18 5.11 16 14 C -0.51 -14.04 8.85 -34.44 -0.30 -14.35 16 15 H 0.07 1.98 6.16 -52.49 -0.32 1.66 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 18 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.08 1.51 5.10 -83.41 -0.42 1.08 16 23 C -0.03 -0.70 6.79 -39.27 -0.27 -0.97 16 24 C -0.10 -2.05 8.93 -39.67 -0.35 -2.40 16 25 C -0.14 -2.49 10.06 -39.53 -0.40 -2.88 16 26 C -0.10 -1.74 9.24 -39.67 -0.37 -2.10 16 27 C -0.15 -2.38 5.26 -104.04 -0.55 -2.93 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 31 H 0.11 0.80 8.11 -51.93 -0.42 0.38 16 32 H 0.11 1.30 5.86 -51.93 -0.30 0.99 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.69 7.35 -51.93 -0.38 0.31 16 35 H 0.08 0.91 7.84 -51.93 -0.41 0.51 16 36 H 0.04 0.66 5.81 -51.93 -0.30 0.36 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.15 3.27 5.51 -52.49 -0.29 2.98 16 43 H 0.12 2.44 7.76 -52.49 -0.41 2.04 16 44 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 45 H 0.12 2.05 5.98 -52.49 -0.31 1.74 16 LS Contribution 355.99 15.07 5.36 5.36 Total: -1.00 -31.94 355.99 -8.52 -40.46 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.50 Total: 2.52 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -1.42 Total: -10.02 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: -0.12 Total: -33.76 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.84 Total: -20.95 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.94 -8.52 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815070940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.575 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds