Wall clock time and date at job start Tue Mar 31 2020 12:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00021 * 2 1 4 4 O 1.20831 * 119.99751 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00060 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47297 * 180.02562 * 5 3 2 7 7 H 1.08996 * 110.65690 * 308.19946 * 6 5 3 8 8 C 1.54603 * 110.74578 * 184.99847 * 6 5 3 9 9 N 1.47908 * 102.63144 * 267.26849 * 8 6 5 10 10 C 1.46898 * 111.00189 * 94.67858 * 9 8 6 11 11 C 1.52995 * 109.47008 * 169.99932 * 10 9 8 12 12 O 1.42902 * 109.47230 * 64.99881 * 11 10 9 13 13 C 1.42898 * 114.00186 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47171 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46999 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46942 * 119.99666 * 18 16 14 21 21 H 1.48504 * 109.46979 * 239.99580 * 18 16 14 22 22 C 1.40040 * 107.90774 * 332.84159 * 9 8 6 23 23 C 1.39407 * 129.94229 * 198.07805 * 22 9 8 24 24 C 1.37907 * 120.19671 * 180.34179 * 23 22 9 25 25 C 1.38313 * 120.26648 * 359.93788 * 24 23 22 26 26 C 1.38300 * 119.87951 * 359.89924 * 25 24 23 27 27 C 1.37920 * 120.08125 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.47598 * 59.99775 * 1 2 3 29 29 H 1.09003 * 109.47566 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46794 * 299.99525 * 1 2 3 31 31 H 1.08996 * 109.47652 * 59.99742 * 5 3 2 32 32 H 1.09004 * 109.47063 * 299.99831 * 5 3 2 33 33 H 1.08994 * 110.77972 * 148.97843 * 8 6 5 34 34 H 1.09006 * 110.77230 * 25.54845 * 8 6 5 35 35 H 1.08999 * 109.47210 * 49.99724 * 10 9 8 36 36 H 1.09004 * 109.46885 * 289.99815 * 10 9 8 37 37 H 1.09001 * 109.47081 * 305.00090 * 11 10 9 38 38 H 1.08999 * 109.47384 * 184.99783 * 11 10 9 39 39 H 1.09002 * 109.47259 * 300.00293 * 13 12 11 40 40 H 1.09001 * 109.47074 * 60.00315 * 13 12 11 41 41 H 0.97000 * 120.00333 * 179.97438 * 17 16 14 42 42 H 1.07993 * 119.90141 * 0.29646 * 23 22 9 43 43 H 1.08000 * 119.86430 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.05668 * 179.87229 * 25 24 23 45 45 H 1.07996 * 119.95640 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 1 3.5040 3.2902 -0.8007 8 6 5.5365 2.8589 -0.1264 9 7 5.9740 2.9154 1.2854 10 6 6.3416 1.5806 1.7765 11 6 7.0189 1.7084 3.1424 12 8 6.0810 2.2161 4.0935 13 6 6.6153 2.3737 5.4095 14 6 5.5456 2.9113 6.3248 15 1 4.5566 3.1121 5.9402 16 6 5.8296 3.1469 7.6533 17 7 7.0338 2.9019 8.1218 18 14 4.5035 3.8125 8.7881 19 1 3.2454 4.0014 8.0220 20 1 4.2700 2.8501 9.8947 21 1 4.9410 5.1158 9.3497 22 6 4.9255 3.4565 2.0398 23 6 4.9384 4.0208 3.3145 24 6 3.7705 4.4919 3.8764 25 6 2.5786 4.4091 3.1794 26 6 2.5583 3.8537 1.9130 27 6 3.7239 3.3825 1.3459 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.9557 0.7809 -0.8907 32 1 3.9563 0.7806 0.8892 33 1 5.8128 3.7720 -0.6536 34 1 5.9511 1.9827 -0.6249 35 1 7.0288 1.1111 1.0726 36 1 5.4446 0.9687 1.8715 37 1 7.8648 2.3916 3.0659 38 1 7.3710 0.7291 3.4664 39 1 6.9587 1.4080 5.7803 40 1 7.4530 3.0706 5.3804 41 1 7.2338 3.0680 9.0564 42 1 5.8657 4.0887 3.8638 43 1 3.7866 4.9277 4.8644 44 1 1.6656 4.7772 3.6235 45 1 1.6283 3.7881 1.3678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815070940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:42 Heat of formation + Delta-G solvation = -95.194683 kcal Electronic energy + Delta-G solvation = -28129.140601 eV Core-core repulsion = 24304.948357 eV Total energy + Delta-G solvation = -3824.192244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.20670 -41.09895 -38.56334 -37.76207 -37.47675 -34.95709 -34.20029 -31.59311 -31.15113 -29.99396 -29.05130 -28.48736 -26.81412 -24.47681 -23.88316 -23.49822 -22.49857 -21.51678 -21.01620 -18.70113 -18.60742 -17.79670 -17.71390 -17.44030 -17.23098 -16.93309 -16.65908 -16.37275 -15.75325 -15.52746 -15.11097 -14.91133 -14.64430 -14.44394 -14.26328 -13.90051 -13.65435 -13.45532 -13.36944 -13.10271 -13.00794 -12.94103 -12.85325 -12.67190 -12.53741 -12.46028 -12.15751 -12.03698 -11.76159 -11.63214 -11.51912 -11.30934 -11.15549 -10.79685 -10.17032 -10.07390 -9.34881 -8.66767 -8.27256 -6.35296 0.54561 0.74186 1.21469 1.38151 1.38918 1.52694 1.79589 2.35219 2.75971 3.01483 3.07864 3.39625 3.56890 3.72536 3.77675 4.11538 4.19335 4.23941 4.28177 4.30334 4.32983 4.37490 4.44236 4.49139 4.54800 4.66113 4.70962 4.76780 4.77342 4.84867 4.88567 4.93479 5.01913 5.06960 5.19443 5.24435 5.34589 5.46832 5.64820 5.68906 5.74531 5.85178 6.03458 6.05187 6.17857 6.52535 6.61166 6.77790 6.91272 7.35345 8.85568 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.004241 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.998515 B = 6600.838335 C = 7345.977473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.458 3.542 4 O -0.526 6.526 5 C -0.102 4.102 6 C -0.058 4.058 7 H 0.102 0.898 8 C 0.060 3.940 9 N -0.501 5.501 10 C 0.067 3.933 11 C 0.044 3.956 12 O -0.385 6.385 13 C 0.210 3.790 14 C -0.523 4.523 15 H 0.070 0.930 16 C 0.008 3.992 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.275 1.275 22 C 0.080 3.920 23 C -0.058 4.058 24 C -0.125 4.125 25 C -0.145 4.145 26 C -0.105 4.105 27 C -0.144 4.144 28 H 0.067 0.933 29 H 0.128 0.872 30 H 0.052 0.948 31 H 0.152 0.848 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.050 0.950 39 H -0.022 1.022 40 H -0.019 1.019 41 H 0.266 0.734 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.128 0.872 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 -5.360 -21.143 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C 0.302 3.698 4 O -0.415 6.415 5 C -0.139 4.139 6 C -0.078 4.078 7 H 0.120 0.880 8 C -0.066 4.066 9 N -0.220 5.220 10 C -0.058 4.058 11 C -0.033 4.033 12 O -0.304 6.304 13 C 0.136 3.864 14 C -0.561 4.561 15 H 0.088 0.912 16 C -0.190 4.190 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.201 1.201 22 C -0.016 4.016 23 C -0.077 4.077 24 C -0.144 4.144 25 C -0.163 4.163 26 C -0.123 4.123 27 C -0.146 4.146 28 H 0.085 0.915 29 H 0.146 0.854 30 H 0.071 0.929 31 H 0.170 0.830 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.068 0.932 39 H -0.004 1.004 40 H -0.002 1.002 41 H 0.075 0.925 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.146 0.854 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.414 -4.759 -21.013 22.785 hybrid contribution -0.921 -0.004 1.597 1.844 sum -8.335 -4.764 -19.416 21.659 Atomic orbital electron populations 1.23477 0.75173 1.05421 1.02283 1.86498 1.24765 1.33290 1.83962 1.24152 0.92960 0.81126 0.71513 1.90600 1.67927 1.36940 1.46003 1.21651 0.86711 0.98090 1.07428 1.21150 0.98394 0.93619 0.94613 0.87971 1.23412 0.90202 1.05465 0.87525 1.60143 1.36915 1.21783 1.03136 1.22462 1.00304 0.88393 0.94658 1.22632 0.92951 0.97687 0.90076 1.88147 1.38275 1.84440 1.19584 1.19705 0.93918 0.93186 0.79633 1.21444 0.98222 1.42689 0.93705 0.91160 1.25797 0.97896 0.95870 0.99454 1.70078 1.21761 1.49819 1.15704 0.85386 0.79154 0.78102 0.78402 1.18720 1.20240 1.20085 1.19420 0.89822 0.98629 0.93721 1.20717 0.98870 0.95122 0.93030 1.20983 0.93071 1.00888 0.99428 1.21204 0.97777 1.02002 0.95363 1.20625 0.97873 0.98835 0.94986 1.21021 0.93108 1.02530 0.97988 0.91465 0.85381 0.92914 0.83048 0.88172 0.88092 0.85704 0.85184 0.93683 0.94013 0.93189 1.00386 1.00151 0.92486 0.86878 0.87340 0.85393 0.85469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.66 16 2 O -0.37 -7.68 10.57 -51.41 -0.54 -8.22 16 3 C 0.46 10.51 7.77 71.23 0.55 11.06 16 4 O -0.53 -14.70 12.59 21.95 0.28 -14.42 16 5 C -0.10 -1.82 5.10 29.85 0.15 -1.67 16 6 C -0.06 -1.25 2.61 -10.72 -0.03 -1.28 16 7 H 0.10 2.09 7.88 -2.39 -0.02 2.07 16 8 C 0.06 1.09 6.56 86.65 0.57 1.66 16 9 N -0.50 -14.01 5.06 -688.65 -3.48 -17.49 16 10 C 0.07 1.73 5.18 86.30 0.45 2.18 16 11 C 0.04 1.55 6.21 71.98 0.45 1.99 16 12 O -0.38 -17.69 5.23 -148.98 -0.78 -18.46 16 13 C 0.21 11.46 5.00 71.24 0.36 11.81 16 14 C -0.52 -29.99 8.85 25.60 0.23 -29.76 16 15 H 0.07 3.99 6.16 -2.91 -0.02 3.98 16 16 C 0.01 0.44 5.46 84.65 0.46 0.90 16 17 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 18 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 19 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 C 0.08 2.80 5.10 38.28 0.20 2.99 16 23 C -0.06 -2.43 6.79 22.47 0.15 -2.28 16 24 C -0.12 -5.13 8.93 22.21 0.20 -4.93 16 25 C -0.15 -5.24 10.06 22.30 0.22 -5.01 16 26 C -0.10 -3.56 9.24 22.21 0.21 -3.35 16 27 C -0.14 -4.52 5.26 -19.49 -0.10 -4.63 16 28 H 0.07 0.97 8.13 -2.38 -0.02 0.96 16 29 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 0.95 8.13 -2.38 -0.02 0.93 16 31 H 0.15 1.37 8.11 -2.39 -0.02 1.35 16 32 H 0.10 2.04 5.86 -2.39 -0.01 2.03 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.12 1.25 7.35 -2.38 -0.02 1.24 16 35 H 0.13 2.18 7.84 -2.39 -0.02 2.17 16 36 H 0.04 1.19 5.81 -2.38 -0.01 1.18 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 40 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 41 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 42 H 0.11 5.46 5.51 -2.91 -0.02 5.44 16 43 H 0.11 4.61 7.76 -2.91 -0.02 4.59 16 44 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 45 H 0.13 4.19 5.98 -2.91 -0.02 4.17 16 Total: -1.00 -72.95 355.99 4.03 -68.92 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.00 Total: 17.36 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 5.25 Total: -18.64 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -3.20 Total: -73.32 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.05 Total: -41.11 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -72.95 4.03 -68.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815070940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.279 kcal (2) G-P(sol) polarization free energy of solvation -72.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds