Wall clock time and date at job start Tue Mar 31 2020 12:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99619 * 2 1 4 4 O 1.20826 * 120.00438 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99747 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46830 * 180.02562 * 5 3 2 7 7 C 1.53780 * 113.61033 * 175.00010 * 6 5 3 8 8 C 1.53778 * 87.08365 * 89.11514 * 7 6 5 9 9 N 1.46897 * 113.61775 * 139.98181 * 8 7 6 10 10 C 1.46907 * 111.00299 * 156.52809 * 9 8 7 11 11 C 1.50700 * 109.47297 * 179.97438 * 10 9 8 12 12 C 1.38299 * 119.92900 * 269.72740 * 11 10 9 13 13 C 1.38098 * 120.06920 * 179.72403 * 12 11 10 14 14 C 1.38880 * 119.92666 * 0.57249 * 13 12 11 15 15 O 1.35754 * 120.07019 * 179.68381 * 14 13 12 16 16 C 1.34824 * 117.00092 * 174.48397 * 15 14 13 17 17 H 1.07999 * 120.00332 * 5.05365 * 16 15 14 18 18 C 1.38656 * 119.99926 * 185.05399 * 16 15 14 19 19 N 1.31559 * 120.00051 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00212 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47001 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47291 * 120.00322 * 20 18 16 23 23 H 1.48509 * 109.46797 * 240.00373 * 20 18 16 24 24 C 1.38879 * 119.86330 * 359.69964 * 14 13 12 25 25 C 1.38096 * 119.93207 * 0.02562 * 24 14 13 26 26 C 1.53778 * 87.17433 * 25.38830 * 8 7 6 27 27 H 1.08999 * 109.46882 * 299.99321 * 1 2 3 28 28 H 1.08997 * 109.47526 * 59.99901 * 1 2 3 29 29 H 1.09006 * 109.46853 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47498 * 60.00330 * 5 3 2 31 31 H 1.08998 * 109.46739 * 299.99934 * 5 3 2 32 32 H 1.08993 * 112.85507 * 43.79724 * 6 5 3 33 33 H 1.08991 * 113.61614 * 334.56169 * 7 6 5 34 34 H 1.09007 * 113.61034 * 203.66103 * 7 6 5 35 35 H 1.09007 * 113.61151 * 270.79510 * 8 7 6 36 36 H 1.00899 * 111.00241 * 280.47876 * 9 8 7 37 37 H 1.08997 * 109.46626 * 300.00209 * 10 9 8 38 38 H 1.08999 * 109.46962 * 59.99668 * 10 9 8 39 39 H 1.08004 * 119.96470 * 359.97438 * 12 11 10 40 40 H 1.07997 * 120.03681 * 180.26914 * 13 12 11 41 41 H 0.96998 * 119.99919 * 179.97438 * 19 18 16 42 42 H 1.08008 * 120.03276 * 179.97438 * 24 14 13 43 43 H 1.07997 * 119.96617 * 180.02562 * 25 24 14 44 44 H 1.08997 * 113.61300 * 89.16316 * 26 8 7 45 45 H 1.09002 * 113.61735 * 220.06371 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7422 0.0002 7 6 5.5208 2.9349 0.1225 8 6 5.5740 2.8646 -1.4128 9 7 6.5116 3.8226 -2.0136 10 6 6.9435 3.3730 -3.3439 11 6 7.9017 4.3791 -3.9276 12 6 7.4218 5.4237 -4.6963 13 6 8.2968 6.3505 -5.2279 14 6 9.6611 6.2258 -4.9996 15 8 10.5244 7.1316 -5.5262 16 6 11.8206 7.0189 -5.1729 17 1 12.1445 6.1865 -4.5657 18 6 12.7380 7.9716 -5.5891 19 7 12.3437 8.9853 -6.3292 20 14 14.5341 7.8151 -5.1003 21 1 14.7176 6.5954 -4.2734 22 1 15.3728 7.7165 -6.3218 23 1 14.9396 9.0095 -4.3164 24 6 10.1403 5.1725 -4.2319 25 6 9.2597 4.2522 -3.6984 26 6 4.1149 3.3500 -1.4097 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9557 0.7811 -0.8908 31 1 3.9563 0.7807 0.8892 32 1 3.4251 3.3532 0.6960 33 1 6.0277 2.1054 0.6154 34 1 5.8068 3.9066 0.5252 35 1 5.6968 1.8529 -1.7995 36 1 6.1067 4.7457 -2.0578 37 1 7.4392 2.4062 -3.2573 38 1 6.0747 3.2789 -3.9953 39 1 6.3613 5.5171 -4.8778 40 1 7.9211 7.1685 -5.8246 41 1 12.9854 9.6520 -6.6200 42 1 11.2008 5.0727 -4.0530 43 1 9.6317 3.4331 -3.1009 44 1 4.0158 4.4354 -1.4266 45 1 3.4884 2.8552 -2.1519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818332685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:31 Heat of formation + Delta-G solvation = -91.910820 kcal Electronic energy + Delta-G solvation = -25134.816527 eV Core-core repulsion = 21310.766681 eV Total energy + Delta-G solvation = -3824.049845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.66036 -40.79338 -40.13187 -38.46129 -37.48068 -35.37155 -34.21262 -31.82854 -31.69311 -30.23542 -28.21480 -27.46937 -26.52555 -25.58656 -23.71495 -23.56133 -22.20251 -21.91645 -19.82276 -19.63521 -18.80438 -18.63947 -17.78002 -17.48555 -16.90772 -16.43396 -16.39656 -16.17832 -15.68025 -15.49575 -15.22778 -14.89569 -14.75169 -14.52773 -14.44119 -14.24708 -13.92894 -13.57200 -13.44978 -13.26189 -13.01529 -12.95744 -12.87820 -12.65373 -12.46827 -12.22932 -12.16651 -12.09463 -11.84556 -11.80825 -11.51832 -11.24367 -11.14542 -11.01784 -10.78022 -9.75124 -9.19622 -8.86610 -8.46367 -6.14401 0.62738 0.70685 1.19299 1.35756 1.44072 1.54267 1.78641 2.18620 2.80881 3.13163 3.48663 3.54152 3.62999 3.67372 3.72602 3.97513 4.08947 4.10434 4.18916 4.24075 4.29487 4.30965 4.41956 4.50426 4.58544 4.63306 4.66287 4.71245 4.75117 4.84721 4.87337 4.93660 5.06376 5.12322 5.17412 5.21254 5.27128 5.33546 5.37439 5.50091 5.59436 5.74306 5.85596 6.04505 6.21960 6.32165 6.53367 6.73775 6.98641 7.80041 8.77193 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.039090 B = 0.001760 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.130687 B =15901.974797 C =16198.107218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.458 3.542 4 O -0.542 6.542 5 C -0.092 4.092 6 C -0.099 4.099 7 C -0.114 4.114 8 C 0.067 3.933 9 N -0.684 5.684 10 C 0.122 3.878 11 C -0.157 4.157 12 C -0.062 4.062 13 C -0.206 4.206 14 C 0.112 3.888 15 O -0.235 6.235 16 C -0.413 4.413 17 H 0.102 0.898 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.269 1.269 24 C -0.244 4.244 25 C -0.049 4.049 26 C -0.161 4.161 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.342 0.658 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.144 0.856 40 H 0.110 0.890 41 H 0.272 0.728 42 H 0.117 0.883 43 H 0.138 0.862 44 H 0.076 0.924 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.259 -20.942 14.383 31.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.303 3.697 4 O -0.431 6.431 5 C -0.129 4.129 6 C -0.118 4.118 7 C -0.152 4.152 8 C -0.043 4.043 9 N -0.314 5.314 10 C -0.006 4.006 11 C -0.158 4.158 12 C -0.080 4.080 13 C -0.226 4.226 14 C 0.062 3.938 15 O -0.142 6.142 16 C -0.489 4.489 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.839 3.161 21 H -0.174 1.174 22 H -0.193 1.193 23 H -0.194 1.194 24 C -0.264 4.264 25 C -0.068 4.068 26 C -0.201 4.201 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.161 0.839 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.162 0.838 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.156 0.844 44 H 0.094 0.906 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.891 -20.573 14.442 31.444 hybrid contribution -0.274 1.018 -0.728 1.281 sum -19.165 -19.555 13.714 30.623 Atomic orbital electron populations 1.23498 0.75217 1.05547 1.02273 1.86511 1.24703 1.33253 1.83833 1.24398 0.93315 0.80894 0.71062 1.90674 1.68224 1.37485 1.46753 1.21343 0.85398 0.98035 1.08090 1.21986 0.97432 0.94282 0.98117 1.23061 0.93214 1.03110 0.95821 1.23223 0.88450 0.96840 0.95754 1.60489 1.43105 1.05635 1.22190 1.20660 0.95352 0.96014 0.88595 1.19677 0.94057 0.99254 1.02839 1.20888 0.99047 0.92638 0.95431 1.20433 0.90196 1.03593 1.08337 1.19956 0.91165 0.89896 0.92784 1.83937 1.18729 1.48802 1.62693 1.21865 0.81055 1.11522 1.34437 0.88121 1.26598 1.05295 0.94063 0.96163 1.70194 1.37201 1.13004 1.35606 0.84520 0.73801 0.79283 0.78530 1.17445 1.19295 1.19384 1.21271 1.00766 0.98409 1.05916 1.20922 0.92703 0.97070 0.96096 1.23730 0.98285 1.00913 0.97140 0.92139 0.92360 0.85196 0.85583 0.84704 0.90819 0.89431 0.90219 0.87042 0.83908 0.89578 0.93721 0.83836 0.87163 0.91890 0.86566 0.84436 0.90564 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.37 -5.07 10.57 -51.41 -0.54 -5.61 16 3 C 0.46 7.23 7.96 71.24 0.57 7.80 16 4 O -0.54 -12.37 15.51 21.96 0.34 -12.03 16 5 C -0.09 -0.87 5.49 29.85 0.16 -0.70 16 6 C -0.10 -1.31 3.35 -10.21 -0.03 -1.34 16 7 C -0.11 -1.48 7.47 31.12 0.23 -1.25 16 8 C 0.07 0.97 3.81 45.44 0.17 1.14 16 9 N -0.68 -13.66 6.60 -492.85 -3.25 -16.92 16 10 C 0.12 2.60 5.66 85.56 0.48 3.08 16 11 C -0.16 -4.75 5.40 -19.83 -0.11 -4.85 16 12 C -0.06 -2.03 9.69 22.25 0.22 -1.82 16 13 C -0.21 -8.87 9.99 22.39 0.22 -8.65 16 14 C 0.11 5.68 6.65 22.58 0.15 5.83 16 15 O -0.23 -14.40 9.76 -22.73 -0.22 -14.62 16 16 C -0.41 -24.41 9.49 67.92 0.64 -23.77 16 17 H 0.10 5.48 5.20 -2.91 -0.02 5.47 16 18 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 19 N -0.92 -57.25 13.67 21.61 0.30 -56.95 16 20 Si 1.02 43.35 29.55 68.60 2.03 45.38 16 21 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 C -0.24 -10.79 9.17 22.39 0.21 -10.58 16 25 C -0.05 -1.71 9.69 22.25 0.22 -1.49 16 26 C -0.16 -2.46 7.25 31.18 0.23 -2.24 16 27 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 28 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 29 H 0.13 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.13 0.77 7.39 -2.39 -0.02 0.75 16 31 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 1.24 7.68 -2.39 -0.02 1.22 16 33 H 0.09 0.87 8.10 -2.39 -0.02 0.85 16 34 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.11 1.27 7.46 -2.38 -0.02 1.26 16 36 H 0.34 7.23 8.20 -89.69 -0.74 6.49 16 37 H 0.09 1.64 8.07 -2.39 -0.02 1.62 16 38 H 0.04 0.85 8.08 -2.39 -0.02 0.83 16 39 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 40 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 41 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 43 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 44 H 0.08 1.32 7.83 -2.39 -0.02 1.30 16 45 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 Total: -1.00 -76.21 379.01 3.93 -72.27 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.27 Total: 26.77 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 5.02 Total: -38.29 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -2.96 Total: -73.87 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.42 Total: -32.27 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -76.21 3.93 -72.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818332685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.638 kcal (2) G-P(sol) polarization free energy of solvation -76.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds