Wall clock time and date at job start Tue Mar 31 2020 12:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99895 * 2 1 4 4 H 1.09007 * 109.47298 * 11.47350 * 3 2 1 5 5 C 1.52997 * 109.46970 * 131.47217 * 3 2 1 6 6 N 1.46495 * 109.47328 * 299.99864 * 5 3 2 7 7 C 1.34772 * 120.00161 * 180.02562 * 6 5 3 8 8 O 1.21287 * 120.00211 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.00127 * 180.02562 * 7 6 5 10 10 C 1.50694 * 109.47272 * 179.97438 * 9 7 6 11 11 C 1.38323 * 119.96489 * 270.02192 * 10 9 7 12 12 C 1.38282 * 120.13622 * 180.02562 * 11 10 9 13 13 C 1.38130 * 120.06986 * 359.67453 * 12 11 10 14 14 C 1.38852 * 119.92533 * 0.59984 * 13 12 11 15 15 O 1.35759 * 120.06503 * 179.69255 * 14 13 12 16 16 C 1.34825 * 117.00064 * 5.58318 * 15 14 13 17 17 H 1.08001 * 119.99724 * 5.16733 * 16 15 14 18 18 C 1.38656 * 120.00144 * 185.17491 * 16 15 14 19 19 N 1.31560 * 119.99959 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99985 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47027 * 89.99749 * 20 18 16 22 22 H 1.48497 * 109.47170 * 210.00198 * 20 18 16 23 23 H 1.48503 * 109.47004 * 330.00114 * 20 18 16 24 24 C 1.38083 * 119.96724 * 89.99996 * 10 9 7 25 25 C 1.53002 * 109.47177 * 251.47394 * 3 2 1 26 26 C 1.52996 * 117.50279 * 129.98305 * 25 3 2 27 27 C 1.52994 * 117.50177 * 61.31862 * 25 3 2 28 28 H 1.09000 * 109.47546 * 52.92331 * 1 2 3 29 29 H 1.09000 * 109.47458 * 172.92263 * 1 2 3 30 30 H 1.08998 * 109.46719 * 292.92478 * 1 2 3 31 31 H 1.09006 * 109.46833 * 179.97438 * 5 3 2 32 32 H 1.08996 * 109.47457 * 60.00125 * 5 3 2 33 33 H 0.97002 * 119.99492 * 0.02562 * 6 5 3 34 34 H 1.08999 * 109.47103 * 60.00026 * 9 7 6 35 35 H 1.08996 * 109.46985 * 300.00347 * 9 7 6 36 36 H 1.07998 * 119.93208 * 359.97438 * 11 10 9 37 37 H 1.08003 * 119.96657 * 179.97438 * 12 11 10 38 38 H 1.08003 * 120.03243 * 180.31948 * 13 12 11 39 39 H 0.97001 * 119.99781 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.03396 * 0.04243 * 24 10 9 41 41 H 1.09001 * 115.54987 * 275.64741 * 25 3 2 42 42 H 1.09008 * 117.49642 * 359.97438 * 26 25 3 43 43 H 1.08998 * 117.50374 * 145.01578 * 26 25 3 44 44 H 1.09007 * 117.50254 * 214.98009 * 27 25 3 45 45 H 1.09002 * 117.49742 * 0.02562 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2379 2.0471 0.2044 5 6 3.0903 1.3828 1.0808 6 7 2.4908 1.1152 2.3904 7 6 3.2577 1.1306 3.4985 8 8 4.4443 1.3664 3.4116 9 6 2.6411 0.8547 4.8457 10 6 3.7049 0.9310 5.9103 11 6 4.4148 -0.2034 6.2601 12 6 5.3914 -0.1376 7.2369 13 6 5.6656 1.0635 7.8616 14 6 4.9507 2.2028 7.5166 15 8 5.2135 3.3833 8.1332 16 6 6.2568 3.4091 8.9869 17 1 6.8907 2.5409 9.0912 18 6 6.5157 4.5500 9.7311 19 7 7.5334 4.5749 10.5644 20 14 5.4196 6.0517 9.5503 21 1 4.3029 5.9697 10.5256 22 1 6.2144 7.2789 9.8098 23 1 4.8700 6.1003 8.1715 24 6 3.9704 2.1334 6.5352 25 6 2.6363 1.5850 -1.3678 26 6 2.2748 2.9037 -2.0541 27 6 1.7075 1.5841 -2.5835 28 1 -0.3634 0.6195 -0.8199 29 1 -0.3634 -1.0198 -0.1266 30 1 -0.3633 0.4003 0.9465 31 1 3.5340 2.3785 1.0805 32 1 3.8626 0.6413 0.8765 33 1 1.5417 0.9270 2.4600 34 1 2.1985 -0.1414 4.8456 35 1 1.8682 1.5956 5.0500 36 1 4.2054 -1.1427 5.7700 37 1 5.9438 -1.0251 7.5082 38 1 6.4321 1.1153 8.6208 39 1 7.7143 5.3730 11.0853 40 1 3.4155 3.0187 6.2618 41 1 3.6487 1.2059 -1.5077 42 1 1.5904 3.5720 -1.5314 43 1 3.0490 3.3920 -2.6459 44 1 2.1088 1.2049 -3.5233 45 1 0.6502 1.3849 -2.4088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818540589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:00 Heat of formation + Delta-G solvation = -59.333029 kcal Electronic energy + Delta-G solvation = -25730.837201 eV Core-core repulsion = 21908.200035 eV Total energy + Delta-G solvation = -3822.637166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.07400 -39.31811 -38.70513 -36.62829 -36.53699 -34.64104 -32.40523 -32.13653 -30.23173 -29.33661 -27.31685 -26.48130 -25.11525 -23.68827 -22.81251 -21.74291 -21.35888 -20.89973 -19.99314 -17.70065 -17.41434 -17.25024 -16.95688 -16.30593 -15.97061 -15.47528 -15.14168 -15.10223 -14.80632 -14.62530 -14.06818 -13.93812 -13.74361 -13.44375 -13.38750 -13.09562 -12.66588 -12.49670 -12.35285 -12.12940 -12.00957 -11.91431 -11.71315 -11.53534 -11.25379 -10.84267 -10.77718 -10.72783 -10.70186 -10.66007 -10.10478 -10.06929 -9.70052 -9.34886 -9.13414 -8.81462 -8.07785 -7.29216 -6.35401 -4.01648 2.07567 2.35547 2.77964 2.99091 3.14456 3.26178 3.28748 3.44670 3.58508 4.22473 4.28933 4.30815 4.47909 4.51924 4.55187 4.73662 4.79363 4.82309 4.92444 5.01656 5.09143 5.13395 5.16719 5.23994 5.26242 5.36817 5.40704 5.45950 5.61307 5.64390 5.65905 5.73164 5.75096 5.91518 6.18928 6.32036 6.33540 6.59533 6.71174 6.85726 7.17181 7.28459 7.38275 7.44164 7.67551 7.87235 8.10753 8.31861 9.00262 9.63826 10.72594 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.002377 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.332113 B =11775.870593 C =12635.110224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.109 3.891 4 H 0.070 0.930 5 C 0.120 3.880 6 N -0.735 5.735 7 C 0.513 3.487 8 O -0.518 6.518 9 C -0.093 4.093 10 C -0.035 4.035 11 C -0.187 4.187 12 C -0.076 4.076 13 C -0.217 4.217 14 C 0.159 3.841 15 O -0.220 6.220 16 C -0.387 4.387 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.882 5.882 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.174 4.174 25 C -0.169 4.169 26 C -0.174 4.174 27 C -0.169 4.169 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.397 0.603 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.278 0.722 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.935 -7.627 -23.055 29.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.293 6.293 3 C 0.051 3.949 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.389 5.389 7 C 0.300 3.700 8 O -0.392 6.392 9 C -0.133 4.133 10 C -0.035 4.035 11 C -0.206 4.206 12 C -0.095 4.095 13 C -0.236 4.236 14 C 0.108 3.892 15 O -0.125 6.125 16 C -0.462 4.462 17 H 0.123 0.877 18 C -0.141 4.141 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.194 4.194 25 C -0.188 4.188 26 C -0.211 4.211 27 C -0.206 4.206 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.230 0.770 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.150 0.850 39 H 0.088 0.912 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.904 -7.254 -22.960 28.857 hybrid contribution -0.871 0.698 0.041 1.117 sum -16.776 -6.556 -22.919 29.149 Atomic orbital electron populations 1.22913 0.81111 1.02988 0.99901 1.88001 1.19426 1.27017 1.94848 1.21913 0.94953 0.85399 0.92638 0.91206 1.21495 0.95418 1.02410 0.81039 1.45882 1.12314 1.74293 1.06379 1.20745 0.87127 0.76583 0.85594 1.90771 1.15412 1.46413 1.86620 1.20582 0.98156 1.04093 0.90486 1.18656 0.96375 0.93338 0.95179 1.20428 1.00792 0.97263 1.02141 1.20743 0.96450 0.96790 0.95491 1.21301 1.04669 0.92602 1.05062 1.19019 0.92972 0.85639 0.91597 1.83576 1.47603 1.28165 1.53197 1.20758 1.03697 1.03362 1.18416 0.87706 1.24458 0.96691 0.98432 0.94517 1.69653 1.27753 1.30117 1.24505 0.86182 0.80086 0.80786 0.79852 1.19973 1.20836 1.18379 1.19928 1.02135 0.97358 0.99937 1.22586 1.00970 1.02306 0.92888 1.23058 1.03800 0.90545 1.03730 1.22873 0.99127 1.00977 0.97660 0.93987 0.89446 0.93984 0.90113 0.90644 0.76968 0.88297 0.88353 0.87709 0.87175 0.84993 0.91156 0.86863 0.86824 0.88638 0.88212 0.88472 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.74 101.05 1.08 1.22 16 2 O -0.37 -3.04 10.01 -35.23 -0.35 -3.39 16 3 C 0.11 0.81 2.48 -26.73 -0.07 0.74 16 4 H 0.07 0.43 7.41 -51.93 -0.38 0.05 16 5 C 0.12 1.20 5.35 -4.05 -0.02 1.18 16 6 N -0.73 -7.58 5.45 -60.30 -0.33 -7.91 16 7 C 0.51 7.33 7.82 -10.98 -0.09 7.24 16 8 O -0.52 -10.07 16.03 5.55 0.09 -9.98 16 9 C -0.09 -1.19 5.83 -29.03 -0.17 -1.36 16 10 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 11 C -0.19 -3.36 9.70 -39.53 -0.38 -3.75 16 12 C -0.08 -1.48 10.04 -39.60 -0.40 -1.88 16 13 C -0.22 -4.96 9.14 -39.39 -0.36 -5.32 16 14 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 15 O -0.22 -6.04 8.59 0.04 0.00 -6.04 16 16 C -0.39 -11.26 9.91 30.89 0.31 -10.95 16 17 H 0.11 3.12 5.52 -52.49 -0.29 2.83 16 18 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 19 N -0.88 -26.06 13.96 55.48 0.77 -25.29 16 20 Si 0.91 22.21 28.62 -169.99 -4.86 17.34 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.17 -3.66 9.65 -39.40 -0.38 -4.04 16 25 C -0.17 -1.18 5.38 -90.62 -0.49 -1.67 16 26 C -0.17 -1.02 10.18 -26.70 -0.27 -1.29 16 27 C -0.17 -0.99 10.18 -26.70 -0.27 -1.26 16 28 H 0.04 0.18 6.74 -51.93 -0.35 -0.17 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.40 2.93 8.35 -40.82 -0.34 2.59 16 34 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 36 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 38 H 0.13 3.13 5.71 -52.48 -0.30 2.83 16 39 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.11 2.23 8.06 -52.49 -0.42 1.80 16 41 H 0.11 0.84 8.12 -51.93 -0.42 0.42 16 42 H 0.10 0.51 8.06 -51.92 -0.42 0.09 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 45 H 0.09 0.49 6.76 -51.93 -0.35 0.14 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -34.62 381.04 -7.89 -42.51 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.64 Total: 3.91 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.32 Total: -16.91 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.45 Total: -33.20 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.26 Total: -19.41 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.86 Total: 17.34 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.62 -7.89 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818540589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.823 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds