Wall clock time and date at job start Tue Mar 31 2020 12:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00277 * 2 1 4 4 H 1.08994 * 109.46830 * 352.83355 * 3 2 1 5 5 C 1.52998 * 109.47163 * 232.83528 * 3 2 1 6 6 N 1.46492 * 109.47204 * 60.92296 * 5 3 2 7 7 C 1.34775 * 120.00232 * 179.42286 * 6 5 3 8 8 O 1.21284 * 119.99788 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00559 * 180.02562 * 7 6 5 10 10 C 1.50701 * 109.47470 * 179.97438 * 9 7 6 11 11 C 1.38319 * 119.96933 * 269.98346 * 10 9 7 12 12 C 1.38274 * 120.13852 * 180.02562 * 11 10 9 13 13 C 1.38127 * 120.07083 * 359.67314 * 12 11 10 14 14 C 1.38856 * 119.92566 * 0.59834 * 13 12 11 15 15 O 1.35755 * 120.06909 * 179.69723 * 14 13 12 16 16 C 1.34831 * 116.99638 * 5.17089 * 15 14 13 17 17 H 1.08002 * 119.99785 * 0.84026 * 16 15 14 18 18 C 1.38656 * 119.99962 * 180.84240 * 16 15 14 19 19 N 1.31559 * 119.99866 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00087 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47170 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47522 * 119.99748 * 20 18 16 23 23 H 1.48503 * 109.47045 * 239.99784 * 20 18 16 24 24 C 1.38084 * 119.96314 * 90.00030 * 10 9 7 25 25 C 1.52998 * 109.47114 * 112.83168 * 3 2 1 26 26 C 1.53004 * 117.49964 * 8.74943 * 25 3 2 27 27 C 1.53004 * 117.49989 * 300.08857 * 25 3 2 28 28 H 1.08998 * 109.47430 * 175.35669 * 1 2 3 29 29 H 1.09002 * 109.46749 * 295.35471 * 1 2 3 30 30 H 1.09003 * 109.47192 * 55.35159 * 1 2 3 31 31 H 1.09001 * 109.46733 * 300.92504 * 5 3 2 32 32 H 1.08993 * 109.47082 * 180.92943 * 5 3 2 33 33 H 0.97003 * 120.00300 * 359.42617 * 6 5 3 34 34 H 1.09006 * 109.46516 * 59.99767 * 9 7 6 35 35 H 1.09003 * 109.47035 * 300.00381 * 9 7 6 36 36 H 1.08000 * 119.92948 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.96574 * 179.97438 * 12 11 10 38 38 H 1.07997 * 120.03579 * 180.32155 * 13 12 11 39 39 H 0.96997 * 119.99646 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.02937 * 0.02562 * 24 10 9 41 41 H 1.09004 * 115.55196 * 154.41735 * 25 3 2 42 42 H 1.08990 * 117.49940 * 359.97438 * 26 25 3 43 43 H 1.08998 * 117.49453 * 145.02097 * 26 25 3 44 44 H 1.09006 * 117.49840 * 214.97814 * 27 25 3 45 45 H 1.09001 * 117.50036 * 359.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2266 2.0520 -0.1282 5 6 3.0138 1.4169 -1.1495 6 7 2.3214 1.2106 -2.4239 7 6 3.0078 1.2756 -3.5820 8 8 4.1988 1.5043 -3.5690 9 6 2.2955 1.0640 -4.8931 10 6 3.2812 1.1883 -6.0262 11 6 3.5075 2.4202 -6.6131 12 6 4.4108 2.5381 -7.6533 13 6 5.0951 1.4266 -8.1052 14 6 4.8659 0.1875 -7.5218 15 8 5.5323 -0.9079 -7.9677 16 6 6.4801 -0.7081 -8.9056 17 1 6.6888 0.2913 -9.2580 18 6 7.1869 -1.7855 -9.4176 19 7 6.9330 -3.0027 -8.9879 20 14 8.5005 -1.5086 -10.7165 21 1 8.5925 -0.0592 -11.0262 22 1 9.8095 -1.9905 -10.2073 23 1 8.1432 -2.2560 -11.9490 24 6 3.9573 0.0721 -6.4777 25 6 2.7291 1.5436 1.3295 26 6 2.8788 0.3504 2.2753 27 6 1.8917 1.4721 2.6080 28 1 -0.3634 -1.0242 -0.0832 29 1 -0.3633 0.4401 0.9287 30 1 -0.3634 0.5843 -0.8454 31 1 3.7885 0.6594 -1.0302 32 1 3.4693 2.4070 -1.1395 33 1 1.3689 1.0274 -2.4343 34 1 1.5142 1.8155 -5.0074 35 1 1.8483 0.0700 -4.9073 36 1 2.9776 3.2917 -6.2581 37 1 4.5851 3.5013 -8.1099 38 1 5.8043 1.5203 -8.9142 39 1 7.4272 -3.7565 -9.3463 40 1 3.7796 -0.8896 -6.0194 41 1 3.5429 2.2683 1.3007 42 1 2.4649 -0.6042 1.9507 43 1 3.7909 0.2903 2.8691 44 1 2.1549 2.1494 3.4206 45 1 0.8287 1.2557 2.5020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818540590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:04 Heat of formation + Delta-G solvation = -84.886442 kcal Electronic energy + Delta-G solvation = -25749.477539 eV Core-core repulsion = 21925.732294 eV Total energy + Delta-G solvation = -3823.745246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.18621 -40.55048 -39.82162 -38.18498 -36.80253 -35.64167 -34.34390 -33.50850 -31.20177 -30.71702 -28.45485 -27.33929 -27.06477 -24.58986 -23.28110 -23.17244 -22.64466 -21.83639 -21.00755 -19.52244 -18.83341 -18.19990 -17.61074 -17.23885 -16.98631 -16.79521 -16.58657 -16.09825 -15.92545 -15.66871 -15.47075 -15.29590 -14.99322 -14.55659 -14.37933 -14.22794 -13.97315 -13.95622 -13.57451 -13.14304 -12.98134 -12.79025 -12.54643 -12.48024 -12.37295 -12.32420 -12.22116 -12.19424 -12.08084 -11.32317 -11.21425 -11.02050 -10.91175 -10.80590 -10.51042 -10.11083 -9.63001 -8.97390 -8.47341 -6.15433 0.52549 0.76342 1.33453 1.42677 1.52562 1.68152 2.15898 2.19891 2.62820 2.85053 3.04916 3.18894 3.44262 3.68343 3.79199 3.84484 3.96402 4.10559 4.12043 4.23227 4.25783 4.32724 4.43050 4.47291 4.54903 4.57455 4.59879 4.62486 4.65043 4.74588 4.81859 4.89663 4.93405 5.04794 5.08039 5.13158 5.24672 5.31271 5.34746 5.43518 5.65779 5.73492 5.76056 6.02943 6.24089 6.24369 6.56177 6.97295 7.30458 7.79255 8.76740 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.002248 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.166143 B =12451.149489 C =13017.581711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.396 6.396 3 C 0.119 3.881 4 H 0.097 0.903 5 C 0.117 3.883 6 N -0.713 5.713 7 C 0.513 3.487 8 O -0.580 6.580 9 C -0.090 4.090 10 C -0.026 4.026 11 C -0.179 4.179 12 C -0.074 4.074 13 C -0.247 4.247 14 C 0.111 3.889 15 O -0.235 6.235 16 C -0.413 4.413 17 H 0.100 0.900 18 C -0.026 4.026 19 N -0.923 5.923 20 Si 1.021 2.979 21 H -0.252 1.252 22 H -0.269 1.269 23 H -0.265 1.265 24 C -0.194 4.194 25 C -0.183 4.183 26 C -0.176 4.176 27 C -0.161 4.161 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.415 0.585 34 H 0.147 0.853 35 H 0.120 0.880 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.117 0.883 39 H 0.272 0.728 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.357 12.692 19.851 29.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.315 6.315 3 C 0.060 3.940 4 H 0.115 0.885 5 C -0.007 4.007 6 N -0.367 5.367 7 C 0.301 3.699 8 O -0.459 6.459 9 C -0.130 4.130 10 C -0.026 4.026 11 C -0.198 4.198 12 C -0.092 4.092 13 C -0.266 4.266 14 C 0.061 3.939 15 O -0.142 6.142 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.223 4.223 19 N -0.561 5.561 20 Si 0.840 3.160 21 H -0.175 1.175 22 H -0.194 1.194 23 H -0.190 1.190 24 C -0.213 4.213 25 C -0.202 4.202 26 C -0.213 4.213 27 C -0.198 4.198 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.251 0.749 34 H 0.165 0.835 35 H 0.138 0.862 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.124 0.876 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.368 12.248 19.910 28.536 hybrid contribution 0.530 -0.453 -0.613 0.929 sum -15.837 11.794 19.297 27.609 Atomic orbital electron populations 1.23120 0.79489 1.03854 1.01253 1.87993 1.21294 1.27421 1.94818 1.21727 0.94862 0.85794 0.91582 0.88517 1.21562 0.95444 1.01515 0.82195 1.45693 1.13152 1.72975 1.04833 1.20958 0.87077 0.75545 0.86367 1.90758 1.17529 1.49504 1.88099 1.20705 0.97397 1.07302 0.87549 1.19204 0.95939 0.92204 0.95293 1.20983 1.02547 0.97072 0.99179 1.21145 0.94455 0.97555 0.96012 1.21298 1.06693 0.93262 1.05374 1.19874 0.92519 0.87705 0.93816 1.83933 1.46960 1.30046 1.53283 1.21871 1.13643 0.96061 1.17339 0.88244 1.26631 1.00935 0.93764 1.00980 1.70201 1.42361 0.99668 1.43919 0.84499 0.75902 0.79504 0.76068 1.17510 1.19410 1.18999 1.20226 1.01944 0.99747 0.99420 1.22688 1.03623 1.03217 0.90640 1.22906 1.01702 0.94344 1.02369 1.23019 0.97448 1.01721 0.97599 0.89113 0.92958 0.92148 0.93497 0.90329 0.74856 0.83514 0.86234 0.83290 0.83607 0.86481 0.91862 0.87769 0.86445 0.88791 0.88834 0.87625 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.73 113.37 1.22 1.37 16 2 O -0.40 -6.00 8.48 -148.98 -1.26 -7.26 16 3 C 0.12 1.58 2.67 30.59 0.08 1.67 16 4 H 0.10 0.84 7.59 -2.39 -0.02 0.82 16 5 C 0.12 2.30 5.34 86.38 0.46 2.77 16 6 N -0.71 -13.71 5.46 -463.09 -2.53 -16.24 16 7 C 0.51 14.33 7.82 87.66 0.69 15.02 16 8 O -0.58 -23.22 16.03 -3.04 -0.05 -23.27 16 9 C -0.09 -2.14 5.83 29.10 0.17 -1.97 16 10 C -0.03 -0.92 4.37 -19.88 -0.09 -1.01 16 11 C -0.18 -5.97 9.70 22.30 0.22 -5.76 16 12 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 13 C -0.25 -11.65 9.15 22.39 0.20 -11.44 16 14 C 0.11 5.98 6.65 22.57 0.15 6.13 16 15 O -0.24 -15.08 9.76 -22.80 -0.22 -15.31 16 16 C -0.41 -25.41 9.48 67.92 0.64 -24.77 16 17 H 0.10 5.66 5.22 -2.91 -0.02 5.64 16 18 C -0.03 -1.56 5.49 84.83 0.47 -1.10 16 19 N -0.92 -58.98 13.67 21.61 0.30 -58.69 16 20 Si 1.02 44.85 29.55 68.60 2.03 46.88 16 21 H -0.25 -10.24 7.11 99.48 0.71 -9.54 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 C -0.19 -9.03 9.65 22.39 0.22 -8.81 16 25 C -0.18 -2.43 5.71 -10.79 -0.06 -2.49 16 26 C -0.18 -2.55 9.88 30.62 0.30 -2.25 16 27 C -0.16 -1.68 10.19 30.62 0.31 -1.37 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.32 7.15 -2.39 -0.02 0.30 16 30 H 0.06 0.28 8.07 -2.39 -0.02 0.26 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.41 4.93 8.34 -92.71 -0.77 4.16 16 34 H 0.15 2.08 8.08 -2.38 -0.02 2.06 16 35 H 0.12 2.42 8.09 -2.39 -0.02 2.41 16 36 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 37 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.12 5.58 5.66 -2.91 -0.02 5.56 16 39 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 40 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 41 H 0.12 1.49 8.11 -2.38 -0.02 1.47 16 42 H 0.09 1.60 7.06 -2.39 -0.02 1.58 16 43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.10 0.88 7.15 -2.39 -0.02 0.86 16 Total: -1.00 -86.17 380.68 3.70 -82.47 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.23 Total: 27.94 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 5.20 Total: -36.52 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -2.23 Total: -74.93 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -1.53 Total: -45.83 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -86.17 3.70 -82.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818540590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.415 kcal (2) G-P(sol) polarization free energy of solvation -86.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds