Wall clock time and date at job start Tue Mar 31 2020 12:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35005 * 116.99439 * 2 1 4 4 O 1.21705 * 120.00476 * 0.02562 * 3 2 1 5 5 C 1.41290 * 119.99689 * 180.02562 * 3 2 1 6 6 C 1.35757 * 120.00277 * 173.67224 * 5 3 2 7 7 C 1.41525 * 119.99601 * 350.63687 * 6 5 3 8 8 C 1.38005 * 126.10542 * 139.26848 * 7 6 5 9 9 C 1.40286 * 106.52599 * 179.97438 * 8 7 6 10 10 C 1.35179 * 107.20751 * 0.02562 * 9 8 7 11 11 C 1.50702 * 125.47919 * 179.97438 * 10 9 8 12 12 N 1.46904 * 109.46913 * 89.99644 * 11 10 9 13 13 C 1.46846 * 110.99885 * 66.04961 * 12 11 10 14 14 C 1.53037 * 109.52455 * 185.83537 * 13 12 11 15 15 C 1.53118 * 109.27954 * 300.82208 * 14 13 12 16 16 C 1.53116 * 109.15962 * 57.65437 * 15 14 13 17 17 H 1.08994 * 109.50576 * 62.28489 * 16 15 14 18 18 C 1.50706 * 109.50160 * 182.36583 * 16 15 14 19 19 H 1.07994 * 120.00124 * 120.00068 * 18 16 15 20 20 C 1.37876 * 119.99870 * 299.99426 * 18 16 15 21 21 N 1.31518 * 119.99957 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99860 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46865 * 90.00563 * 22 20 18 24 24 H 1.48500 * 109.47053 * 210.00367 * 22 20 18 25 25 H 1.48496 * 109.47412 * 330.00112 * 22 20 18 26 26 C 1.46847 * 110.99855 * 190.25683 * 12 11 10 27 27 O 1.34013 * 109.04550 * 359.76522 * 10 9 8 28 28 H 1.09000 * 109.46702 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46863 * 299.99738 * 1 2 3 30 30 H 1.08997 * 109.47507 * 59.99843 * 1 2 3 31 31 H 1.08006 * 119.99991 * 353.94018 * 5 3 2 32 32 H 1.07993 * 120.00265 * 170.64247 * 6 5 3 33 33 H 1.07996 * 126.73999 * 359.96842 * 8 7 6 34 34 H 1.07993 * 126.39641 * 179.97438 * 9 8 7 35 35 H 1.08993 * 109.47395 * 209.99777 * 11 10 9 36 36 H 1.09003 * 109.47176 * 330.00541 * 11 10 9 37 37 H 1.09003 * 109.46450 * 305.85310 * 13 12 11 38 38 H 1.09004 * 109.46149 * 65.82203 * 13 12 11 39 39 H 1.09003 * 109.50079 * 60.76335 * 14 13 12 40 40 H 1.09004 * 109.50264 * 180.87843 * 14 13 12 41 41 H 1.08998 * 109.52093 * 177.55537 * 15 14 13 42 42 H 1.08992 * 109.52281 * 297.68334 * 15 14 13 43 43 H 0.96998 * 119.99886 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.46591 * 294.17687 * 26 12 11 45 45 H 1.08994 * 109.46319 * 54.14854 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2030 0.0000 4 8 1.3790 2.2237 0.0005 5 6 3.4528 1.2770 -0.0005 6 6 4.0694 2.4794 -0.1301 7 6 3.3145 3.6296 -0.4620 8 6 3.4747 4.8905 0.0756 9 6 2.5196 5.7119 -0.5418 10 6 1.8298 4.9395 -1.4107 11 6 0.7023 5.4090 -2.2936 12 7 1.2459 5.8710 -3.5778 13 6 1.8380 4.7572 -4.3298 14 6 2.5203 5.2960 -5.5893 15 6 1.4867 6.0260 -6.4513 16 6 0.8506 7.1502 -5.6291 17 1 1.6164 7.8723 -5.3463 18 6 -0.2095 7.8368 -6.4513 19 1 -1.2333 7.8524 -6.1081 20 6 0.1278 8.4453 -7.6417 21 7 1.3746 8.4261 -8.0598 22 14 -1.1863 9.2958 -8.6611 23 1 -1.2882 10.7189 -8.2493 24 1 -0.8226 9.2214 -10.0989 25 1 -2.4925 8.6232 -8.4455 26 6 0.2165 6.5577 -4.3685 27 8 2.3127 3.6903 -1.3640 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 4.0408 0.3764 0.0978 32 1 5.1360 2.5583 0.0199 33 1 4.1941 5.1868 0.8247 34 1 2.3640 6.7644 -0.3568 35 1 0.0098 4.5855 -2.4674 36 1 0.1762 6.2295 -1.8057 37 1 2.5743 4.2492 -3.7069 38 1 1.0552 4.0538 -4.6136 39 1 3.3125 5.9890 -5.3058 40 1 2.9462 4.4673 -6.1552 41 1 1.9770 6.4487 -7.3282 42 1 0.7155 5.3239 -6.7681 43 1 1.6118 8.8538 -8.8975 44 1 -0.5587 5.8458 -4.6521 45 1 -0.2249 7.3573 -3.7738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826861293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:03 Heat of formation + Delta-G solvation = -45.517497 kcal Electronic energy + Delta-G solvation = -27076.696246 eV Core-core repulsion = 23254.658166 eV Total energy + Delta-G solvation = -3822.038080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.43257 -40.57437 -38.18958 -36.94236 -34.52126 -33.87072 -32.82500 -31.86387 -30.01620 -29.46615 -28.05519 -25.98750 -24.94417 -23.69375 -22.03306 -21.82317 -21.37529 -20.54773 -19.63304 -18.60425 -18.19107 -17.11643 -16.56031 -16.44989 -16.05869 -15.53235 -14.89709 -14.64557 -14.50780 -14.30752 -14.09942 -13.50922 -13.38015 -13.30186 -12.97452 -12.73690 -12.67236 -12.50351 -12.34192 -12.10389 -11.88433 -11.72658 -11.29118 -10.94995 -10.87995 -10.69885 -10.66699 -10.62600 -10.31731 -10.09343 -9.83345 -9.66808 -9.47313 -9.08218 -8.70446 -8.30097 -7.96475 -7.69648 -5.96786 -4.03181 0.23336 1.99000 2.66288 2.76931 2.91854 3.18776 3.31436 3.38172 3.41057 4.40316 4.55226 4.63156 4.74404 4.92147 4.95492 5.01353 5.03008 5.12079 5.32269 5.33270 5.45049 5.59339 5.62245 5.65659 5.77233 5.84263 5.95712 6.06800 6.08976 6.17623 6.26489 6.31096 6.37607 6.50180 6.62587 6.72742 6.75233 6.94058 7.21604 7.30396 7.38169 7.61513 7.67210 7.72007 7.78012 8.08229 8.17910 8.47796 9.00738 9.61083 11.09161 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.002797 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.144789 B =10009.826320 C =10379.020706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.486 3.514 4 O -0.488 6.488 5 C -0.210 4.210 6 C 0.042 3.958 7 C -0.031 4.031 8 C -0.156 4.156 9 C -0.209 4.209 10 C 0.048 3.952 11 C 0.127 3.873 12 N -0.533 5.533 13 C 0.063 3.937 14 C -0.116 4.116 15 C -0.111 4.111 16 C 0.056 3.944 17 H 0.035 0.965 18 C -0.515 4.515 19 H 0.054 0.946 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.067 3.933 27 O -0.139 6.139 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.024 0.976 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.030 0.970 43 H 0.260 0.740 44 H 0.022 0.978 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.672 -14.645 17.503 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.333 3.667 4 O -0.377 6.377 5 C -0.229 4.229 6 C 0.024 3.976 7 C -0.080 4.080 8 C -0.176 4.176 9 C -0.229 4.229 10 C -0.005 4.005 11 C -0.001 4.001 12 N -0.258 5.258 13 C -0.065 4.065 14 C -0.154 4.154 15 C -0.149 4.149 16 C 0.037 3.963 17 H 0.054 0.946 18 C -0.554 4.554 19 H 0.072 0.928 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.059 4.059 27 O -0.033 6.033 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.166 0.834 32 H 0.180 0.820 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.040 0.960 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.795 -14.215 17.262 22.870 hybrid contribution -1.437 -0.059 -0.592 1.555 sum 3.358 -14.274 16.670 22.202 Atomic orbital electron populations 1.22836 0.77119 1.03360 1.02437 1.86208 1.23200 1.33251 1.84838 1.19996 0.90403 0.81632 0.74656 1.90978 1.67108 1.35108 1.44499 1.21422 0.91673 0.99660 1.10159 1.20797 0.98909 0.88579 0.89323 1.19443 0.93786 0.95531 0.99283 1.22177 1.01700 0.91375 1.02311 1.21388 0.99536 1.00902 1.01051 1.22653 0.97706 0.81641 0.98539 1.20617 0.90176 0.99089 0.90215 1.62094 1.34054 1.26729 1.02896 1.22066 0.97472 0.91503 0.95459 1.21670 0.99534 0.99246 0.94919 1.21661 0.96235 0.96762 1.00235 1.18660 0.95481 0.93229 0.88900 0.94649 1.21136 0.94536 1.34351 1.05365 0.92797 1.24934 0.95259 0.96096 0.97548 1.69893 1.16699 1.44146 1.21918 0.86619 0.82068 0.79970 0.79469 1.20703 1.21289 1.20021 1.22360 0.91433 0.96073 0.96012 1.84173 1.39648 1.30487 1.48988 0.88308 0.92345 0.92132 0.83411 0.82023 0.83296 0.83235 0.93686 0.87878 0.92438 0.95810 0.92070 0.93522 0.89012 0.95144 0.93048 0.95996 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.45 101.05 1.06 1.39 16 2 O -0.36 -4.04 10.47 -41.33 -0.43 -4.47 16 3 C 0.49 6.13 7.49 31.89 0.24 6.37 16 4 O -0.49 -7.64 12.27 -27.65 -0.34 -7.98 16 5 C -0.21 -1.99 9.99 -39.31 -0.39 -2.38 16 6 C 0.04 0.40 9.95 -39.22 -0.39 0.01 16 7 C -0.03 -0.41 5.27 -38.42 -0.20 -0.61 16 8 C -0.16 -1.98 10.90 -38.90 -0.42 -2.40 16 9 C -0.21 -3.02 10.76 -39.90 -0.43 -3.45 16 10 C 0.05 0.77 5.89 -35.40 -0.21 0.56 16 11 C 0.13 2.08 5.49 -4.97 -0.03 2.05 16 12 N -0.53 -10.19 4.65 -236.11 -1.10 -11.28 16 13 C 0.06 1.20 5.31 -3.83 -0.02 1.18 16 14 C -0.12 -2.36 6.09 -26.65 -0.16 -2.53 16 15 C -0.11 -2.66 5.02 -26.61 -0.13 -2.79 16 16 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 17 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 18 C -0.52 -14.09 8.57 -34.44 -0.29 -14.38 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 21 N -0.89 -25.35 11.35 55.43 0.63 -24.72 16 22 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 C 0.07 1.44 4.68 -3.83 -0.02 1.42 16 27 O -0.14 -2.25 7.13 -20.01 -0.14 -2.40 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 31 H 0.15 0.91 8.06 -52.48 -0.42 0.48 16 32 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.10 1.51 7.98 -51.93 -0.41 1.10 16 37 H 0.06 1.05 6.50 -51.93 -0.34 0.72 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 1.28 8.01 -51.93 -0.42 0.86 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -32.06 368.42 -9.51 -41.57 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.95 Total: 0.24 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.71 Total: -12.74 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.47 Total: -36.01 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.91 Total: -14.85 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.06 -9.51 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.945 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds