Wall clock time and date at job start Tue Mar 31 2020 12:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.34996 * 117.00011 * 2 1 4 4 O 1.21713 * 119.99947 * 0.27720 * 3 2 1 5 5 C 1.41295 * 119.99726 * 180.02562 * 3 2 1 6 6 C 1.35754 * 119.99831 * 180.02562 * 5 3 2 7 7 C 1.41525 * 119.99958 * 180.02562 * 6 5 3 8 8 C 1.38005 * 126.10787 * 179.71134 * 7 6 5 9 9 C 1.40283 * 106.52375 * 179.85125 * 8 7 6 10 10 C 1.35170 * 107.21200 * 0.41459 * 9 8 7 11 11 C 1.50702 * 125.48265 * 179.72114 * 10 9 8 12 12 N 1.46898 * 109.47204 * 89.99466 * 11 10 9 13 13 C 1.46840 * 111.00219 * 294.21478 * 12 11 10 14 14 C 1.53042 * 109.52166 * 174.16103 * 13 12 11 15 15 C 1.53120 * 109.27980 * 59.18080 * 14 13 12 16 16 C 1.53122 * 109.15602 * 302.34650 * 15 14 13 17 17 H 1.08998 * 109.53623 * 297.68878 * 16 15 14 18 18 C 1.50701 * 109.50041 * 177.59690 * 16 15 14 19 19 H 1.08000 * 120.00222 * 240.19615 * 18 16 15 20 20 C 1.37882 * 120.00041 * 60.19131 * 18 16 15 21 21 N 1.31511 * 119.99772 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00085 * 179.97438 * 20 18 16 23 23 H 1.48513 * 109.46679 * 60.00441 * 22 20 18 24 24 H 1.48494 * 109.47167 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47376 * 300.00941 * 22 20 18 26 26 C 1.46849 * 110.99628 * 170.00048 * 12 11 10 27 27 O 1.34004 * 109.04376 * 359.74066 * 10 9 8 28 28 H 1.09003 * 109.46611 * 299.99484 * 1 2 3 29 29 H 1.08998 * 109.47329 * 59.99762 * 1 2 3 30 30 H 1.08996 * 109.47418 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00117 * 0.02562 * 5 3 2 32 32 H 1.07999 * 120.00052 * 359.97438 * 6 5 3 33 33 H 1.08005 * 126.73449 * 359.97438 * 8 7 6 34 34 H 1.07998 * 126.39049 * 180.15721 * 9 8 7 35 35 H 1.08999 * 109.47270 * 210.00117 * 11 10 9 36 36 H 1.09003 * 109.46534 * 329.99740 * 11 10 9 37 37 H 1.08998 * 109.46367 * 294.17417 * 13 12 11 38 38 H 1.09001 * 109.46455 * 54.14556 * 13 12 11 39 39 H 1.08998 * 109.50199 * 299.23728 * 14 13 12 40 40 H 1.09002 * 109.49758 * 179.11959 * 14 13 12 41 41 H 1.08990 * 109.52039 * 182.44271 * 15 14 13 42 42 H 1.09002 * 109.52222 * 62.24509 * 15 14 13 43 43 H 0.97001 * 119.99865 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.46605 * 305.85954 * 26 12 11 45 45 H 1.09004 * 109.46073 * 65.83350 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0419 1.2028 0.0000 4 8 1.3790 2.2236 0.0051 5 6 3.4529 1.2767 -0.0005 6 6 4.0693 2.4863 0.0000 7 6 5.4826 2.5603 -0.0011 8 6 6.2364 3.7163 -0.0064 9 6 7.5809 3.3158 -0.0020 10 6 7.5957 1.9642 -0.0037 11 6 8.8323 1.1030 -0.0063 12 7 9.2359 0.8214 1.3778 13 6 9.6602 2.0492 2.0624 14 6 9.9331 1.7443 3.5371 15 6 11.0265 0.6772 3.6388 16 6 10.5801 -0.5737 2.8768 17 1 9.6785 -0.9783 3.3367 18 6 11.6753 -1.6079 2.9220 19 1 12.1195 -1.9646 2.0044 20 6 12.1105 -2.0987 4.1348 21 7 11.5694 -1.6647 5.2521 22 14 13.4676 -3.3811 4.1907 23 1 14.6963 -2.8291 3.5654 24 1 13.7497 -3.7419 5.6033 25 1 13.0354 -4.5920 3.4478 26 6 10.2884 -0.2017 1.4213 27 8 6.3338 1.5131 -0.0032 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.0411 0.3709 -0.0014 32 1 3.4811 3.3920 0.0004 33 1 5.8642 4.7302 -0.0108 34 1 8.4431 3.9662 -0.0018 35 1 8.6213 0.1657 -0.5211 36 1 9.6384 1.6264 -0.5205 37 1 10.5689 2.4296 1.5960 38 1 8.8721 2.7984 1.9863 39 1 9.0212 1.3769 4.0076 40 1 10.2631 2.6526 4.0414 41 1 11.1936 0.4256 4.6860 42 1 11.9498 1.0590 3.2030 43 1 11.8752 -2.0103 6.1053 44 1 9.9566 -1.0874 0.8796 45 1 11.1943 0.1893 0.9579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826861294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:07 Heat of formation + Delta-G solvation = -55.875982 kcal Electronic energy + Delta-G solvation = -25995.525804 eV Core-core repulsion = 22173.038547 eV Total energy + Delta-G solvation = -3822.487258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.72617 -40.71121 -38.32873 -36.99153 -34.71573 -34.01613 -33.08001 -31.98076 -30.18901 -29.59157 -28.13369 -26.26941 -25.00017 -23.75076 -22.21879 -21.83261 -21.49190 -20.68919 -19.73309 -18.67299 -18.17168 -16.83954 -16.71207 -16.62794 -16.43872 -16.11004 -15.22431 -14.77525 -14.54083 -14.30242 -14.08840 -13.73113 -13.60089 -13.30240 -13.10711 -12.79797 -12.77935 -12.54941 -12.35889 -12.20751 -12.10167 -11.74780 -11.33986 -10.97797 -10.95458 -10.90954 -10.82460 -10.73593 -10.72567 -10.22608 -9.92795 -9.84440 -9.52129 -9.14170 -8.75696 -8.33654 -8.13124 -7.81212 -5.99697 -4.06365 0.04690 1.83772 2.39483 2.66562 2.72570 3.00767 3.30781 3.35979 3.37892 4.31579 4.46422 4.52301 4.68953 4.73932 4.85248 4.88281 4.94461 4.96072 5.22071 5.27885 5.30428 5.42794 5.45072 5.59782 5.65273 5.73017 5.82330 5.85658 5.98458 6.00919 6.17379 6.18164 6.28414 6.31563 6.43309 6.65430 6.68971 6.87560 6.98440 7.15834 7.30856 7.51779 7.55556 7.64404 7.73797 8.03930 8.13777 8.43473 8.97296 9.58085 11.06326 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.002473 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.178162 B =11320.401548 C =12412.395633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.505 3.495 4 O -0.521 6.521 5 C -0.217 4.217 6 C 0.049 3.951 7 C -0.039 4.039 8 C -0.138 4.138 9 C -0.223 4.223 10 C 0.058 3.942 11 C 0.120 3.880 12 N -0.534 5.534 13 C 0.057 3.943 14 C -0.117 4.117 15 C -0.111 4.111 16 C 0.055 3.945 17 H 0.035 0.965 18 C -0.517 4.517 19 H 0.053 0.947 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.891 3.109 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.068 3.932 27 O -0.150 6.150 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.144 0.856 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.030 0.970 43 H 0.261 0.739 44 H 0.063 0.937 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.318 9.449 -11.571 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.354 3.646 4 O -0.414 6.414 5 C -0.236 4.236 6 C 0.030 3.970 7 C -0.089 4.089 8 C -0.157 4.157 9 C -0.243 4.243 10 C 0.004 3.996 11 C -0.008 4.008 12 N -0.260 5.260 13 C -0.071 4.071 14 C -0.155 4.155 15 C -0.149 4.149 16 C 0.037 3.963 17 H 0.054 0.946 18 C -0.555 4.555 19 H 0.072 0.928 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.719 3.281 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.058 4.058 27 O -0.045 6.045 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.162 0.838 32 H 0.177 0.823 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -15.032 9.182 -11.119 20.830 hybrid contribution 1.286 -0.147 -0.293 1.327 sum -13.745 9.035 -11.411 20.020 Atomic orbital electron populations 1.22883 0.77032 1.03667 1.02328 1.86255 1.23239 1.32922 1.84354 1.19811 0.89943 0.81428 0.73404 1.90889 1.67723 1.35706 1.47043 1.21242 0.91463 1.00165 1.10745 1.20692 0.88694 0.98878 0.88698 1.19596 0.90368 0.85465 1.13424 1.22368 0.92914 0.98575 1.01887 1.21559 0.97923 0.94331 1.10440 1.22897 0.83757 0.93708 0.99189 1.20650 0.88904 0.98389 0.92866 1.62010 1.42099 1.10495 1.11357 1.22174 0.97629 0.91049 0.96262 1.21668 1.00994 0.99245 0.93548 1.21668 0.94405 0.94269 1.04581 1.18667 0.96773 0.92931 0.87963 0.94646 1.21083 1.19600 1.22457 0.92404 0.92828 1.24933 0.96617 0.96520 0.95731 1.69878 1.42177 1.43118 0.97446 0.86678 0.82413 0.82071 0.76929 1.20375 1.21316 1.20279 1.22377 0.89546 0.91947 1.01900 1.84100 1.15589 1.34926 1.69900 0.92143 0.92223 0.88076 0.83771 0.82268 0.82552 0.82893 0.88828 0.91562 0.95583 0.91876 0.92097 0.93399 0.89040 0.95074 0.92944 0.91870 0.95819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.45 101.05 1.06 1.33 16 2 O -0.35 -3.91 10.46 -41.31 -0.43 -4.35 16 3 C 0.50 6.09 7.68 31.89 0.24 6.33 16 4 O -0.52 -7.16 15.88 -19.43 -0.31 -7.47 16 5 C -0.22 -2.44 9.55 -39.31 -0.38 -2.82 16 6 C 0.05 0.51 9.39 -39.22 -0.37 0.14 16 7 C -0.04 -0.47 6.84 -38.42 -0.26 -0.73 16 8 C -0.14 -1.45 10.90 -38.90 -0.42 -1.87 16 9 C -0.22 -2.55 9.19 -39.91 -0.37 -2.92 16 10 C 0.06 0.77 6.21 -35.40 -0.22 0.55 16 11 C 0.12 1.65 5.49 -4.98 -0.03 1.62 16 12 N -0.53 -9.34 4.65 -236.12 -1.10 -10.43 16 13 C 0.06 0.94 5.25 -3.83 -0.02 0.92 16 14 C -0.12 -2.23 6.09 -26.65 -0.16 -2.39 16 15 C -0.11 -2.56 5.03 -26.61 -0.13 -2.69 16 16 C 0.06 1.35 2.26 -91.69 -0.21 1.14 16 17 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.52 -13.80 8.56 -34.44 -0.29 -14.09 16 19 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 21 N -0.89 -25.01 11.36 55.43 0.63 -24.38 16 22 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.07 1.37 4.68 -3.83 -0.02 1.35 16 27 O -0.15 -2.10 10.18 4.69 0.05 -2.05 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.14 1.62 7.72 -52.49 -0.41 1.21 16 32 H 0.16 1.40 7.46 -52.49 -0.39 1.01 16 33 H 0.16 1.17 8.06 -52.48 -0.42 0.74 16 34 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 35 H 0.09 1.22 7.99 -51.93 -0.41 0.81 16 36 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.95 5.97 -51.93 -0.31 0.64 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 2.38 6.16 -51.93 -0.32 2.06 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.06 1.24 8.01 -51.93 -0.42 0.82 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 373.13 15.07 5.62 5.62 Total: -1.00 -30.28 373.13 -9.10 -39.38 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.87 Total: 0.25 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -1.67 Total: -12.48 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.47 Total: -34.81 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.69 Total: -13.87 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.28 -9.10 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.492 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds