Wall clock time and date at job start Tue Mar 31 2020 12:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.34996 * 117.00011 * 2 1 4 4 O 1.21713 * 119.99947 * 0.27720 * 3 2 1 5 5 C 1.41295 * 119.99726 * 180.02562 * 3 2 1 6 6 C 1.35754 * 119.99831 * 180.02562 * 5 3 2 7 7 C 1.41525 * 119.99958 * 180.02562 * 6 5 3 8 8 C 1.38005 * 126.10787 * 179.71134 * 7 6 5 9 9 C 1.40283 * 106.52375 * 179.85125 * 8 7 6 10 10 C 1.35170 * 107.21200 * 0.41459 * 9 8 7 11 11 C 1.50702 * 125.48265 * 179.72114 * 10 9 8 12 12 N 1.46898 * 109.47204 * 89.99466 * 11 10 9 13 13 C 1.46840 * 111.00219 * 294.21478 * 12 11 10 14 14 C 1.53042 * 109.52166 * 174.16103 * 13 12 11 15 15 C 1.53120 * 109.27980 * 59.18080 * 14 13 12 16 16 C 1.53122 * 109.15602 * 302.34650 * 15 14 13 17 17 H 1.08998 * 109.53623 * 297.68878 * 16 15 14 18 18 C 1.50701 * 109.50041 * 177.59690 * 16 15 14 19 19 H 1.08000 * 120.00222 * 240.19615 * 18 16 15 20 20 C 1.37882 * 120.00041 * 60.19131 * 18 16 15 21 21 N 1.31511 * 119.99772 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00085 * 179.97438 * 20 18 16 23 23 H 1.48513 * 109.46679 * 60.00441 * 22 20 18 24 24 H 1.48494 * 109.47167 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47376 * 300.00941 * 22 20 18 26 26 C 1.46849 * 110.99628 * 170.00048 * 12 11 10 27 27 O 1.34004 * 109.04376 * 359.74066 * 10 9 8 28 28 H 1.09003 * 109.46611 * 299.99484 * 1 2 3 29 29 H 1.08998 * 109.47329 * 59.99762 * 1 2 3 30 30 H 1.08996 * 109.47418 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00117 * 0.02562 * 5 3 2 32 32 H 1.07999 * 120.00052 * 359.97438 * 6 5 3 33 33 H 1.08005 * 126.73449 * 359.97438 * 8 7 6 34 34 H 1.07998 * 126.39049 * 180.15721 * 9 8 7 35 35 H 1.08999 * 109.47270 * 210.00117 * 11 10 9 36 36 H 1.09003 * 109.46534 * 329.99740 * 11 10 9 37 37 H 1.08998 * 109.46367 * 294.17417 * 13 12 11 38 38 H 1.09001 * 109.46455 * 54.14556 * 13 12 11 39 39 H 1.08998 * 109.50199 * 299.23728 * 14 13 12 40 40 H 1.09002 * 109.49758 * 179.11959 * 14 13 12 41 41 H 1.08990 * 109.52039 * 182.44271 * 15 14 13 42 42 H 1.09002 * 109.52222 * 62.24509 * 15 14 13 43 43 H 0.97001 * 119.99865 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.46605 * 305.85954 * 26 12 11 45 45 H 1.09004 * 109.46073 * 65.83350 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0419 1.2028 0.0000 4 8 1.3790 2.2236 0.0051 5 6 3.4529 1.2767 -0.0005 6 6 4.0693 2.4863 0.0000 7 6 5.4826 2.5603 -0.0011 8 6 6.2364 3.7163 -0.0064 9 6 7.5809 3.3158 -0.0020 10 6 7.5957 1.9642 -0.0037 11 6 8.8323 1.1030 -0.0063 12 7 9.2359 0.8214 1.3778 13 6 9.6602 2.0492 2.0624 14 6 9.9331 1.7443 3.5371 15 6 11.0265 0.6772 3.6388 16 6 10.5801 -0.5737 2.8768 17 1 9.6785 -0.9783 3.3367 18 6 11.6753 -1.6079 2.9220 19 1 12.1195 -1.9646 2.0044 20 6 12.1105 -2.0987 4.1348 21 7 11.5694 -1.6647 5.2521 22 14 13.4676 -3.3811 4.1907 23 1 14.6963 -2.8291 3.5654 24 1 13.7497 -3.7419 5.6033 25 1 13.0354 -4.5920 3.4478 26 6 10.2884 -0.2017 1.4213 27 8 6.3338 1.5131 -0.0032 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.0411 0.3709 -0.0014 32 1 3.4811 3.3920 0.0004 33 1 5.8642 4.7302 -0.0108 34 1 8.4431 3.9662 -0.0018 35 1 8.6213 0.1657 -0.5211 36 1 9.6384 1.6264 -0.5205 37 1 10.5689 2.4296 1.5960 38 1 8.8721 2.7984 1.9863 39 1 9.0212 1.3769 4.0076 40 1 10.2631 2.6526 4.0414 41 1 11.1936 0.4256 4.6860 42 1 11.9498 1.0590 3.2030 43 1 11.8752 -2.0103 6.1053 44 1 9.9566 -1.0874 0.8796 45 1 11.1943 0.1893 0.9579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826861294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:06 Heat of formation + Delta-G solvation = -72.657068 kcal Electronic energy + Delta-G solvation = -25996.253487 eV Core-core repulsion = 22173.038547 eV Total energy + Delta-G solvation = -3823.214940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.64038 -41.59363 -39.81496 -37.86333 -36.00339 -35.26920 -34.17903 -33.55315 -31.74241 -30.81191 -28.99699 -27.27142 -26.90585 -24.81565 -23.58489 -22.97399 -22.82308 -21.70759 -20.61277 -20.34184 -19.06092 -18.46686 -17.68095 -17.51504 -17.41942 -17.35012 -16.67162 -16.18959 -15.96941 -15.43907 -15.10443 -14.98303 -14.89515 -14.40738 -14.34293 -14.00499 -13.93107 -13.74550 -13.58536 -13.44941 -13.20477 -12.84766 -12.82370 -12.74022 -12.54810 -12.33732 -11.86897 -11.79500 -11.75646 -11.75250 -11.71169 -11.39045 -10.89588 -10.81537 -10.65493 -10.36286 -9.26048 -8.94856 -8.06632 -6.20863 -0.82531 0.90939 1.43202 1.44343 1.51531 1.52761 1.81179 1.91888 2.14268 2.44192 3.13000 3.20762 3.59439 3.79705 3.92531 4.04290 4.10376 4.16629 4.21596 4.30457 4.32688 4.33146 4.39274 4.55225 4.61986 4.64268 4.69780 4.74819 4.77279 4.89812 4.93106 4.97963 5.02627 5.10032 5.14333 5.18182 5.33499 5.38989 5.49256 5.52628 5.65032 5.94030 6.06696 6.12665 6.20804 6.26300 6.44778 6.67779 6.92299 7.47219 8.97911 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.002473 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.178162 B =11320.401548 C =12412.395633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.506 3.494 4 O -0.543 6.543 5 C -0.232 4.232 6 C 0.063 3.937 7 C -0.056 4.056 8 C -0.126 4.126 9 C -0.214 4.214 10 C 0.033 3.967 11 C 0.122 3.878 12 N -0.552 5.552 13 C 0.064 3.936 14 C -0.111 4.111 15 C -0.104 4.104 16 C 0.051 3.949 17 H -0.008 1.008 18 C -0.535 4.535 19 H 0.055 0.945 20 C 0.013 3.987 21 N -0.917 5.917 22 Si 0.954 3.046 23 H -0.269 1.269 24 H -0.287 1.287 25 H -0.272 1.272 26 C 0.083 3.917 27 O -0.175 6.175 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.179 0.821 33 H 0.191 0.809 34 H 0.176 0.824 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.028 0.972 43 H 0.259 0.741 44 H 0.061 0.939 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.244 11.075 -13.040 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.357 3.643 4 O -0.438 6.438 5 C -0.251 4.251 6 C 0.045 3.955 7 C -0.104 4.104 8 C -0.144 4.144 9 C -0.234 4.234 10 C -0.020 4.020 11 C -0.004 4.004 12 N -0.277 5.277 13 C -0.064 4.064 14 C -0.149 4.149 15 C -0.142 4.142 16 C 0.033 3.967 17 H 0.010 0.990 18 C -0.573 4.573 19 H 0.074 0.926 20 C -0.186 4.186 21 N -0.556 5.556 22 Si 0.780 3.220 23 H -0.195 1.195 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.044 4.044 27 O -0.071 6.071 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.156 0.844 32 H 0.196 0.804 33 H 0.208 0.792 34 H 0.193 0.807 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -14.964 10.806 -12.607 22.352 hybrid contribution 1.198 -0.648 0.161 1.371 sum -13.766 10.158 -12.446 21.156 Atomic orbital electron populations 1.23175 0.75379 1.05619 1.02495 1.86247 1.25001 1.32511 1.84052 1.19903 0.90136 0.81416 0.72848 1.90867 1.68172 1.36270 1.48454 1.21228 0.91208 1.00479 1.12186 1.20900 0.88369 0.99266 0.86999 1.19979 0.90732 0.85712 1.14013 1.22805 0.92258 0.99584 0.99801 1.21892 0.99115 0.93646 1.08716 1.22889 0.83399 0.94455 1.01220 1.20651 0.89989 0.99232 0.90574 1.61849 1.41037 1.10551 1.14283 1.22121 0.99060 0.91113 0.94087 1.21580 0.98587 0.98666 0.96061 1.21462 0.95701 0.95081 1.01958 1.18593 0.94247 0.93041 0.90856 0.98978 1.21501 1.20153 1.23140 0.92531 0.92635 1.25735 0.98883 0.98521 0.95477 1.70039 1.43503 1.44274 0.97824 0.85678 0.79824 0.79665 0.76874 1.19456 1.21233 1.19717 1.22002 0.90720 0.93066 0.98586 1.84074 1.16210 1.36215 1.70588 0.92175 0.91865 0.85302 0.84381 0.80371 0.79207 0.80687 0.88779 0.89155 0.94205 0.89557 0.93948 0.91105 0.92648 0.95312 0.93143 0.92034 0.95248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.45 113.37 1.18 1.59 16 2 O -0.36 -7.97 10.46 -59.15 -0.62 -8.59 16 3 C 0.51 12.10 7.68 68.57 0.53 12.63 16 4 O -0.54 -14.65 15.88 19.14 0.30 -14.34 16 5 C -0.23 -5.16 9.55 22.45 0.21 -4.95 16 6 C 0.06 1.23 9.39 22.50 0.21 1.44 16 7 C -0.06 -1.21 6.84 23.03 0.16 -1.06 16 8 C -0.13 -2.18 10.90 22.71 0.25 -1.93 16 9 C -0.21 -4.12 9.19 22.06 0.20 -3.92 16 10 C 0.03 0.81 6.21 24.98 0.16 0.97 16 11 C 0.12 3.14 5.49 85.56 0.47 3.61 16 12 N -0.55 -18.66 4.65 -900.94 -4.19 -22.85 16 13 C 0.06 1.98 5.25 86.33 0.45 2.43 16 14 C -0.11 -4.18 6.09 30.65 0.19 -4.00 16 15 C -0.10 -4.88 5.03 30.68 0.15 -4.72 16 16 C 0.05 2.58 2.26 -11.49 -0.03 2.55 16 17 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 18 C -0.53 -29.14 8.56 25.60 0.22 -28.92 16 19 H 0.06 2.92 7.74 -2.91 -0.02 2.90 16 20 C 0.01 0.69 5.30 84.66 0.45 1.14 16 21 N -0.92 -53.38 11.36 21.45 0.24 -53.14 16 22 Si 0.95 43.35 29.54 68.60 2.03 45.38 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 C 0.08 3.32 4.68 86.32 0.40 3.72 16 27 O -0.17 -4.70 10.18 -6.12 -0.06 -4.76 16 28 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 29 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 30 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.14 3.19 7.72 -2.91 -0.02 3.16 16 32 H 0.18 2.75 7.46 -2.91 -0.02 2.72 16 33 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.09 2.36 7.99 -2.39 -0.02 2.34 16 36 H 0.09 1.89 8.12 -2.39 -0.02 1.87 16 37 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 2.31 5.97 -2.39 -0.01 2.30 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.05 2.99 6.16 -2.39 -0.01 2.97 16 42 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 44 H 0.06 2.42 8.01 -2.39 -0.02 2.40 16 45 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -67.53 373.13 3.89 -63.64 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.98 Total: 14.09 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 5.21 Total: -19.42 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -3.94 Total: -75.99 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.38 Total: -27.69 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -67.53 3.89 -63.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.020 kcal (2) G-P(sol) polarization free energy of solvation -67.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds