Wall clock time and date at job start Tue Mar 31 2020 12:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.34997 * 117.00165 * 2 1 4 4 O 1.21715 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.41291 * 120.00123 * 179.97438 * 3 2 1 6 6 C 1.35753 * 119.99862 * 179.97438 * 5 3 2 7 7 C 1.41529 * 119.99758 * 180.02562 * 6 5 3 8 8 C 1.37998 * 126.10408 * 179.97438 * 7 6 5 9 9 C 1.40288 * 106.52486 * 179.76562 * 8 7 6 10 10 C 1.35186 * 107.20655 * 0.40319 * 9 8 7 11 11 C 1.50699 * 125.47983 * 179.84433 * 10 9 8 12 12 N 1.46903 * 109.46743 * 89.71992 * 11 10 9 13 13 C 1.46840 * 111.00469 * 293.95617 * 12 11 10 14 14 C 1.53041 * 109.52596 * 185.83969 * 13 12 11 15 15 C 1.53123 * 109.27643 * 300.82086 * 14 13 12 16 16 C 1.53118 * 109.16174 * 57.65272 * 15 14 13 17 17 H 1.09002 * 109.50277 * 62.32247 * 16 15 14 18 18 C 1.50697 * 109.50411 * 182.40360 * 16 15 14 19 19 H 1.08003 * 120.00232 * 114.50840 * 18 16 15 20 20 C 1.37879 * 120.00084 * 294.50621 * 18 16 15 21 21 N 1.31518 * 120.00021 * 162.89206 * 20 18 16 22 22 Si 1.86800 * 119.99945 * 342.89880 * 20 18 16 23 23 H 1.48505 * 109.47041 * 269.99511 * 22 20 18 24 24 H 1.48498 * 109.47207 * 149.99709 * 22 20 18 25 25 H 1.48498 * 109.47070 * 29.99465 * 22 20 18 26 26 C 1.46854 * 110.99841 * 58.17024 * 12 11 10 27 27 O 1.34004 * 109.04142 * 359.58658 * 10 9 8 28 28 H 1.08997 * 109.47514 * 300.00151 * 1 2 3 29 29 H 1.09003 * 109.47073 * 60.00696 * 1 2 3 30 30 H 1.09000 * 109.47288 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99603 * 359.97438 * 5 3 2 32 32 H 1.07995 * 120.00057 * 359.97438 * 6 5 3 33 33 H 1.07995 * 126.74175 * 0.02562 * 8 7 6 34 34 H 1.07996 * 126.40228 * 180.25241 * 9 8 7 35 35 H 1.08996 * 109.47026 * 329.72729 * 11 10 9 36 36 H 1.08998 * 109.47380 * 209.72191 * 11 10 9 37 37 H 1.08999 * 109.46460 * 65.82233 * 13 12 11 38 38 H 1.09004 * 109.46311 * 305.85222 * 13 12 11 39 39 H 1.08996 * 109.50450 * 180.87911 * 14 13 12 40 40 H 1.09000 * 109.53606 * 60.77765 * 14 13 12 41 41 H 1.08997 * 109.52117 * 297.74889 * 15 14 13 42 42 H 1.08996 * 109.57134 * 177.59178 * 15 14 13 43 43 H 0.97000 * 119.99801 * 354.70190 * 21 20 18 44 44 H 1.08997 * 109.45992 * 54.13883 * 26 12 11 45 45 H 1.09003 * 109.45808 * 294.17266 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0419 1.2028 0.0000 4 8 1.3790 2.2236 -0.0005 5 6 3.4529 1.2767 0.0005 6 6 4.0692 2.4863 0.0000 7 6 5.4825 2.5604 0.0000 8 6 6.2363 3.7163 -0.0010 9 6 7.5808 3.3160 0.0049 10 6 7.5956 1.9642 0.0001 11 6 8.8323 1.1030 0.0005 12 7 9.2341 0.8238 1.3856 13 6 9.6633 2.0518 2.0668 14 6 10.2100 1.7033 3.4531 15 6 9.1179 1.0018 4.2655 16 6 8.6544 -0.2474 3.5110 17 1 9.4888 -0.9413 3.4088 18 6 7.5383 -0.9116 4.2753 19 1 6.5459 -0.9568 3.8516 20 6 7.7841 -1.4617 5.5155 21 7 6.7832 -1.7346 6.3238 22 14 9.5386 -1.8192 6.0476 23 1 9.9090 -3.1977 5.6380 24 1 9.6429 -1.6966 7.5238 25 1 10.4588 -0.8475 5.4040 26 6 8.1529 0.1576 2.1231 27 8 6.3337 1.5132 0.0007 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 4.0410 0.3709 0.0014 32 1 3.4810 3.3920 -0.0012 33 1 5.8642 4.7302 -0.0015 34 1 8.4431 3.9662 0.0097 35 1 9.6390 1.6256 -0.5135 36 1 8.6219 0.1649 -0.5130 37 1 8.8129 2.7257 2.1707 38 1 10.4429 2.5387 1.4809 39 1 10.5140 2.6166 3.9646 40 1 11.0692 1.0406 3.3501 41 1 8.2745 1.6785 4.4025 42 1 9.5152 0.7132 5.2386 43 1 5.8797 -1.4790 6.0805 44 1 7.8355 -0.7312 1.5779 45 1 7.3096 0.8404 2.2266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826861296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:11 Heat of formation + Delta-G solvation = -56.140662 kcal Electronic energy + Delta-G solvation = -26928.961881 eV Core-core repulsion = 23106.463146 eV Total energy + Delta-G solvation = -3822.498735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.74353 -40.62421 -38.56685 -36.90176 -34.72634 -34.04405 -33.05694 -32.23549 -30.23161 -29.75205 -28.07050 -26.36372 -24.66980 -23.93857 -22.47706 -21.76865 -21.14612 -20.67157 -19.68650 -18.81437 -18.08346 -17.52469 -16.76416 -16.56051 -16.52830 -16.32224 -15.34241 -14.81255 -14.71971 -14.18805 -13.99112 -13.56688 -13.49634 -13.33149 -13.11972 -13.00545 -12.71263 -12.68189 -12.44119 -12.28016 -12.04021 -11.91475 -11.62548 -11.14682 -10.88504 -10.85525 -10.74069 -10.64323 -10.58254 -10.14790 -9.92571 -9.80049 -9.68360 -9.31513 -8.71754 -8.27360 -8.19462 -7.97079 -6.40999 -4.03292 0.10515 1.87582 2.43431 2.72205 2.79433 3.07829 3.45246 3.47035 3.63102 4.23734 4.52898 4.54644 4.67159 4.76168 4.89044 4.97655 5.02534 5.04850 5.13615 5.27442 5.37132 5.40391 5.46044 5.49037 5.59147 5.62805 5.77361 5.84264 5.87262 5.96434 6.04129 6.13118 6.25335 6.26205 6.32082 6.33169 6.45309 6.63188 6.80154 6.86998 6.98875 7.24956 7.36031 7.41894 7.61845 7.64139 8.20578 8.41362 8.93066 9.64753 10.97040 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010580 B = 0.003967 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.856884 B = 7056.918275 C = 9144.652580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.505 3.495 4 O -0.521 6.521 5 C -0.210 4.210 6 C 0.043 3.957 7 C -0.032 4.032 8 C -0.144 4.144 9 C -0.218 4.218 10 C 0.004 3.996 11 C 0.123 3.877 12 N -0.523 5.523 13 C 0.055 3.945 14 C -0.120 4.120 15 C -0.119 4.119 16 C 0.029 3.971 17 H 0.031 0.969 18 C -0.599 4.599 19 H 0.053 0.947 20 C 0.034 3.966 21 N -0.908 5.908 22 Si 1.042 2.958 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.268 1.268 26 C 0.074 3.926 27 O -0.152 6.152 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.144 0.856 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.035 0.965 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.267 0.733 44 H 0.066 0.934 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 9.562 -15.581 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.266 6.266 3 C 0.355 3.645 4 O -0.413 6.413 5 C -0.229 4.229 6 C 0.024 3.976 7 C -0.082 4.082 8 C -0.164 4.164 9 C -0.238 4.238 10 C -0.051 4.051 11 C -0.006 4.006 12 N -0.246 5.246 13 C -0.073 4.073 14 C -0.158 4.158 15 C -0.157 4.157 16 C 0.009 3.991 17 H 0.049 0.951 18 C -0.637 4.637 19 H 0.072 0.928 20 C -0.171 4.171 21 N -0.542 5.542 22 Si 0.870 3.130 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.194 1.194 26 C -0.053 4.053 27 O -0.047 6.047 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.162 0.838 32 H 0.177 0.823 33 H 0.174 0.826 34 H 0.170 0.830 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.340 8.515 -14.351 16.691 hybrid contribution -1.977 1.478 -1.104 2.704 sum -2.317 9.993 -15.455 18.550 Atomic orbital electron populations 1.22888 0.77009 1.03702 1.02303 1.86262 1.23267 1.32823 1.84264 1.19787 0.89913 0.81467 0.73376 1.90883 1.67716 1.35705 1.47000 1.21270 0.91591 1.00151 1.09880 1.20691 0.88725 0.98904 0.89231 1.19661 0.90453 0.85542 1.12494 1.22358 0.93003 0.98551 1.02442 1.21561 0.97835 0.94318 1.10040 1.24297 0.84769 0.95136 1.00922 1.21219 0.87911 0.98083 0.93357 1.62515 1.37913 1.23585 1.00559 1.22138 0.98689 0.90668 0.95781 1.21670 0.99788 0.99906 0.94398 1.22056 0.96100 0.98684 0.98850 1.19031 0.97047 0.93028 0.89988 0.95112 1.21948 0.95951 1.41356 1.04429 0.92848 1.25738 1.05203 0.93495 0.92654 1.70806 1.01094 1.45556 1.36767 0.84122 0.75938 0.76972 0.75934 1.21367 1.21535 1.19379 1.22220 0.90142 0.96801 0.96112 1.84164 1.15640 1.35005 1.69848 0.92093 0.92252 0.88043 0.83790 0.82255 0.82624 0.82972 0.87696 0.88789 0.94725 0.91711 0.92778 0.91743 0.93465 0.92491 0.92285 0.91572 0.95422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.45 101.05 1.06 1.40 16 2 O -0.35 -4.64 10.46 -41.31 -0.43 -5.07 16 3 C 0.51 7.15 7.68 31.89 0.24 7.39 16 4 O -0.52 -8.11 15.88 -19.43 -0.31 -8.42 16 5 C -0.21 -2.83 9.55 -39.31 -0.38 -3.20 16 6 C 0.04 0.54 9.39 -39.22 -0.37 0.17 16 7 C -0.03 -0.43 6.84 -38.42 -0.26 -0.70 16 8 C -0.14 -1.70 10.90 -38.90 -0.42 -2.12 16 9 C -0.22 -2.61 9.47 -39.90 -0.38 -2.99 16 10 C 0.00 0.05 4.88 -35.39 -0.17 -0.12 16 11 C 0.12 1.57 5.90 -4.97 -0.03 1.54 16 12 N -0.52 -8.50 4.86 -236.11 -1.15 -9.64 16 13 C 0.05 0.83 4.97 -3.84 -0.02 0.81 16 14 C -0.12 -2.03 6.09 -26.65 -0.16 -2.19 16 15 C -0.12 -2.55 4.72 -26.61 -0.13 -2.67 16 16 C 0.03 0.67 1.81 -91.69 -0.17 0.50 16 17 H 0.03 0.74 6.71 -51.93 -0.35 0.39 16 18 C -0.60 -16.75 8.83 -34.44 -0.30 -17.05 16 19 H 0.05 1.63 7.99 -52.48 -0.42 1.21 16 20 C 0.03 0.97 5.35 -17.82 -0.10 0.88 16 21 N -0.91 -28.07 13.70 55.43 0.76 -27.31 16 22 Si 1.04 25.11 26.31 -169.99 -4.47 20.64 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.27 -5.89 5.50 56.52 0.31 -5.58 16 26 C 0.07 1.50 4.18 -3.83 -0.02 1.48 16 27 O -0.15 -2.32 9.65 4.70 0.05 -2.27 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.14 1.97 7.72 -52.49 -0.41 1.56 16 32 H 0.16 1.70 7.46 -52.49 -0.39 1.31 16 33 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.10 1.03 8.06 -51.93 -0.42 0.61 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.03 0.55 6.66 -51.93 -0.35 0.20 16 38 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.27 5.09 -51.93 -0.26 1.01 16 43 H 0.27 8.27 8.73 -40.82 -0.36 7.92 16 44 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 45 H 0.03 0.60 6.92 -51.93 -0.36 0.24 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -32.73 366.18 -8.47 -41.21 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.84 Total: 2.22 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.60 Total: -16.88 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.39 Total: -36.95 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.70 Total: -15.76 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -4.47 Total: 20.64 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.73 -8.47 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.932 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds