Wall clock time and date at job start Tue Mar 31 2020 12:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.34997 * 117.00165 * 2 1 4 4 O 1.21715 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.41291 * 120.00123 * 179.97438 * 3 2 1 6 6 C 1.35753 * 119.99862 * 179.97438 * 5 3 2 7 7 C 1.41529 * 119.99758 * 180.02562 * 6 5 3 8 8 C 1.37998 * 126.10408 * 179.97438 * 7 6 5 9 9 C 1.40288 * 106.52486 * 179.76562 * 8 7 6 10 10 C 1.35186 * 107.20655 * 0.40319 * 9 8 7 11 11 C 1.50699 * 125.47983 * 179.84433 * 10 9 8 12 12 N 1.46903 * 109.46743 * 89.71992 * 11 10 9 13 13 C 1.46840 * 111.00469 * 293.95617 * 12 11 10 14 14 C 1.53041 * 109.52596 * 185.83969 * 13 12 11 15 15 C 1.53123 * 109.27643 * 300.82086 * 14 13 12 16 16 C 1.53118 * 109.16174 * 57.65272 * 15 14 13 17 17 H 1.09002 * 109.50277 * 62.32247 * 16 15 14 18 18 C 1.50697 * 109.50411 * 182.40360 * 16 15 14 19 19 H 1.08003 * 120.00232 * 114.50840 * 18 16 15 20 20 C 1.37879 * 120.00084 * 294.50621 * 18 16 15 21 21 N 1.31518 * 120.00021 * 162.89206 * 20 18 16 22 22 Si 1.86800 * 119.99945 * 342.89880 * 20 18 16 23 23 H 1.48505 * 109.47041 * 269.99511 * 22 20 18 24 24 H 1.48498 * 109.47207 * 149.99709 * 22 20 18 25 25 H 1.48498 * 109.47070 * 29.99465 * 22 20 18 26 26 C 1.46854 * 110.99841 * 58.17024 * 12 11 10 27 27 O 1.34004 * 109.04142 * 359.58658 * 10 9 8 28 28 H 1.08997 * 109.47514 * 300.00151 * 1 2 3 29 29 H 1.09003 * 109.47073 * 60.00696 * 1 2 3 30 30 H 1.09000 * 109.47288 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99603 * 359.97438 * 5 3 2 32 32 H 1.07995 * 120.00057 * 359.97438 * 6 5 3 33 33 H 1.07995 * 126.74175 * 0.02562 * 8 7 6 34 34 H 1.07996 * 126.40228 * 180.25241 * 9 8 7 35 35 H 1.08996 * 109.47026 * 329.72729 * 11 10 9 36 36 H 1.08998 * 109.47380 * 209.72191 * 11 10 9 37 37 H 1.08999 * 109.46460 * 65.82233 * 13 12 11 38 38 H 1.09004 * 109.46311 * 305.85222 * 13 12 11 39 39 H 1.08996 * 109.50450 * 180.87911 * 14 13 12 40 40 H 1.09000 * 109.53606 * 60.77765 * 14 13 12 41 41 H 1.08997 * 109.52117 * 297.74889 * 15 14 13 42 42 H 1.08996 * 109.57134 * 177.59178 * 15 14 13 43 43 H 0.97000 * 119.99801 * 354.70190 * 21 20 18 44 44 H 1.08997 * 109.45992 * 54.13883 * 26 12 11 45 45 H 1.09003 * 109.45808 * 294.17266 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0419 1.2028 0.0000 4 8 1.3790 2.2236 -0.0005 5 6 3.4529 1.2767 0.0005 6 6 4.0692 2.4863 0.0000 7 6 5.4825 2.5604 0.0000 8 6 6.2363 3.7163 -0.0010 9 6 7.5808 3.3160 0.0049 10 6 7.5956 1.9642 0.0001 11 6 8.8323 1.1030 0.0005 12 7 9.2341 0.8238 1.3856 13 6 9.6633 2.0518 2.0668 14 6 10.2100 1.7033 3.4531 15 6 9.1179 1.0018 4.2655 16 6 8.6544 -0.2474 3.5110 17 1 9.4888 -0.9413 3.4088 18 6 7.5383 -0.9116 4.2753 19 1 6.5459 -0.9568 3.8516 20 6 7.7841 -1.4617 5.5155 21 7 6.7832 -1.7346 6.3238 22 14 9.5386 -1.8192 6.0476 23 1 9.9090 -3.1977 5.6380 24 1 9.6429 -1.6966 7.5238 25 1 10.4588 -0.8475 5.4040 26 6 8.1529 0.1576 2.1231 27 8 6.3337 1.5132 0.0007 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 4.0410 0.3709 0.0014 32 1 3.4810 3.3920 -0.0012 33 1 5.8642 4.7302 -0.0015 34 1 8.4431 3.9662 0.0097 35 1 9.6390 1.6256 -0.5135 36 1 8.6219 0.1649 -0.5130 37 1 8.8129 2.7257 2.1707 38 1 10.4429 2.5387 1.4809 39 1 10.5140 2.6166 3.9646 40 1 11.0692 1.0406 3.3501 41 1 8.2745 1.6785 4.4025 42 1 9.5152 0.7132 5.2386 43 1 5.8797 -1.4790 6.0805 44 1 7.8355 -0.7312 1.5779 45 1 7.3096 0.8404 2.2266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826861296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:10 Heat of formation + Delta-G solvation = -77.211926 kcal Electronic energy + Delta-G solvation = -26929.875600 eV Core-core repulsion = 23106.463146 eV Total energy + Delta-G solvation = -3823.412454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.75499 -41.68971 -39.97650 -37.95534 -36.11834 -35.35116 -34.32685 -33.82179 -31.91291 -30.85966 -29.05145 -27.44405 -26.56948 -25.08322 -23.72047 -22.90620 -22.57985 -21.87862 -20.69753 -20.39232 -19.67864 -19.15486 -17.78621 -17.63363 -17.58785 -17.42345 -16.63135 -16.16468 -15.99610 -15.51395 -15.21296 -15.13288 -14.78998 -14.48170 -14.37364 -14.30739 -14.01243 -13.80814 -13.71768 -13.61009 -13.38443 -13.05018 -12.92746 -12.63344 -12.33888 -12.20463 -11.89751 -11.85119 -11.84299 -11.75086 -11.60257 -11.45313 -11.04474 -10.84814 -10.73626 -10.44476 -9.51106 -9.04725 -8.73677 -6.36409 -0.92754 0.84745 1.46105 1.49038 1.54366 1.73831 1.77248 1.83710 2.04040 2.52141 2.99155 3.07217 3.54665 3.70534 3.83367 3.93388 4.02343 4.07644 4.10883 4.22267 4.22784 4.25711 4.29952 4.48579 4.54126 4.60818 4.63963 4.66466 4.69378 4.77196 4.85652 4.87616 4.92792 4.95378 5.03216 5.06332 5.23222 5.23733 5.28015 5.43865 5.50996 5.75060 5.82075 6.00174 6.04192 6.12656 6.26549 6.56927 6.57859 7.41142 8.62559 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010580 B = 0.003967 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.856884 B = 7056.918275 C = 9144.652580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.507 3.493 4 O -0.541 6.541 5 C -0.236 4.236 6 C 0.061 3.939 7 C -0.064 4.064 8 C -0.130 4.130 9 C -0.210 4.210 10 C -0.015 4.015 11 C 0.123 3.877 12 N -0.524 5.524 13 C 0.055 3.945 14 C -0.115 4.115 15 C -0.118 4.118 16 C 0.025 3.975 17 H 0.033 0.967 18 C -0.602 4.602 19 H 0.006 0.994 20 C -0.019 4.019 21 N -0.942 5.942 22 Si 1.085 2.915 23 H -0.275 1.275 24 H -0.290 1.290 25 H -0.230 1.230 26 C 0.092 3.908 27 O -0.182 6.182 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.179 0.821 33 H 0.189 0.811 34 H 0.185 0.815 35 H 0.149 0.851 36 H 0.092 0.908 37 H 0.028 0.972 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.025 0.975 42 H 0.046 0.954 43 H 0.249 0.751 44 H 0.049 0.951 45 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 11.862 -17.046 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.358 3.642 4 O -0.436 6.436 5 C -0.255 4.255 6 C 0.043 3.957 7 C -0.113 4.113 8 C -0.148 4.148 9 C -0.229 4.229 10 C -0.069 4.069 11 C -0.005 4.005 12 N -0.246 5.246 13 C -0.072 4.072 14 C -0.152 4.152 15 C -0.156 4.156 16 C 0.006 3.994 17 H 0.051 0.949 18 C -0.640 4.640 19 H 0.025 0.975 20 C -0.216 4.216 21 N -0.578 5.578 22 Si 0.905 3.095 23 H -0.201 1.201 24 H -0.216 1.216 25 H -0.154 1.154 26 C -0.036 4.036 27 O -0.078 6.078 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.196 0.804 33 H 0.206 0.794 34 H 0.202 0.798 35 H 0.166 0.834 36 H 0.111 0.889 37 H 0.046 0.954 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 3.003 10.825 -15.857 19.433 hybrid contribution -3.089 0.789 -0.714 3.267 sum -0.086 11.614 -16.571 20.236 Atomic orbital electron populations 1.23198 0.75216 1.05700 1.02584 1.86252 1.25199 1.32480 1.84020 1.19841 0.90032 0.81492 0.72876 1.90852 1.68079 1.36148 1.48474 1.21205 0.91438 1.00345 1.12504 1.20939 0.88780 0.99126 0.86881 1.20037 0.90807 0.86109 1.14320 1.22854 0.92864 0.99321 0.99808 1.21978 0.98834 0.93782 1.08317 1.24601 0.84487 0.96223 1.01635 1.21411 0.88982 0.98850 0.91266 1.62420 1.35800 1.24613 1.01766 1.22256 0.99664 0.89938 0.95391 1.21651 0.97934 1.00745 0.94913 1.21922 0.97181 0.97547 0.98961 1.18988 0.95126 0.93800 0.91515 0.94897 1.22216 0.95534 1.41385 1.04912 0.97511 1.27280 1.08525 0.92881 0.92943 1.70948 1.00794 1.48066 1.38033 0.83637 0.71678 0.78341 0.75834 1.20108 1.21605 1.15367 1.21759 0.90657 0.96172 0.94967 1.84142 1.16736 1.36361 1.70607 0.92340 0.91443 0.85249 0.85055 0.80350 0.79406 0.79808 0.83368 0.88919 0.95383 0.87061 0.89927 0.90957 0.95563 0.93517 0.94251 0.93262 0.97962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.45 113.37 1.18 1.71 16 2 O -0.36 -10.13 10.46 -59.15 -0.62 -10.75 16 3 C 0.51 15.12 7.68 68.57 0.53 15.65 16 4 O -0.54 -17.35 15.88 19.13 0.30 -17.04 16 5 C -0.24 -6.80 9.55 22.44 0.21 -6.58 16 6 C 0.06 1.55 9.39 22.51 0.21 1.76 16 7 C -0.06 -1.70 6.84 23.02 0.16 -1.55 16 8 C -0.13 -2.69 10.90 22.71 0.25 -2.44 16 9 C -0.21 -4.24 9.47 22.06 0.21 -4.03 16 10 C -0.02 -0.39 4.88 24.98 0.12 -0.27 16 11 C 0.12 2.74 5.90 85.56 0.50 3.25 16 12 N -0.52 -15.54 4.86 -900.92 -4.38 -19.92 16 13 C 0.05 1.40 4.97 86.33 0.43 1.83 16 14 C -0.11 -3.41 6.09 30.65 0.19 -3.23 16 15 C -0.12 -4.90 4.72 30.67 0.14 -4.76 16 16 C 0.03 1.18 1.81 -11.49 -0.02 1.16 16 17 H 0.03 1.54 6.71 -2.39 -0.02 1.52 16 18 C -0.60 -35.28 8.83 25.60 0.23 -35.05 16 19 H 0.01 0.43 7.99 -2.91 -0.02 0.41 16 20 C -0.02 -1.14 5.35 84.65 0.45 -0.68 16 21 N -0.94 -60.94 13.70 21.45 0.29 -60.65 16 22 Si 1.08 50.41 26.31 68.60 1.80 52.22 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.23 -9.24 5.50 99.48 0.55 -8.69 16 26 C 0.09 3.77 4.18 86.32 0.36 4.13 16 27 O -0.18 -5.62 9.65 -6.08 -0.06 -5.68 16 28 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 29 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.13 4.02 7.72 -2.91 -0.02 4.00 16 32 H 0.18 3.72 7.46 -2.91 -0.02 3.69 16 33 H 0.19 2.55 8.06 -2.91 -0.02 2.52 16 34 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 35 H 0.15 2.06 8.06 -2.39 -0.02 2.04 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.03 0.77 6.66 -2.39 -0.02 0.76 16 38 H 0.11 1.94 8.06 -2.38 -0.02 1.92 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.05 2.00 5.09 -2.39 -0.01 1.99 16 43 H 0.25 16.48 8.73 -92.71 -0.81 15.67 16 44 H 0.05 2.12 8.12 -2.39 -0.02 2.10 16 45 H 0.00 0.10 6.92 -2.39 -0.02 0.08 16 Total: -1.00 -76.66 366.18 3.29 -73.37 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.78 Total: 17.57 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 5.16 Total: -29.11 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -4.08 Total: -80.57 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.37 Total: -33.48 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 1.80 Total: 52.22 kcal Total: -76.66 3.29 -73.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.844 kcal (2) G-P(sol) polarization free energy of solvation -76.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds